EsuBft882_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft882_5a-0001
Unique Name	EsuBft882_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_618	contig	Scaffold_618:890275..899177 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LRD2
ProteomeId	EsuBft882_5
Protein domains	IPR000073
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	IPR029058
Owner	apollo_admin@sb-roscoff.fr
Nb exon	5
Max annot lvl	2759\|Eukaryota
Length	150
Hectar predicted targeting category	signal peptide
Evalue	8.69e-218
EggNOG OGs	COG1075@1\|root,2S15P@2759\|Eukaryota
Ec32 ortholog description	Alpha/Beta hydrolase fold
Ec32 ortholog	Ec-06_002970.1
Date last modified	2016-06-13
Date creation	2016-06-13
Description	palmitoyl-(protein) hydrolase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft882_5a	EsuBft882_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_618 890275..899177 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft882_5a-0001	EsuBft882_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_618 890673..899157 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft882_5a-0001-exon	EsuBft882_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_618 890275..890842 -
EsuBft882_5a-0001-exon	agat-exon-70013	Ectocarpus subulatus male Bft15b	exon	Scaffold_618 896480..896635 -
EsuBft882_5a-0001-exon	agat-exon-70012	Ectocarpus subulatus male Bft15b	exon	Scaffold_618 896963..897281 -
EsuBft882_5a-0001-exon	agat-exon-70014	Ectocarpus subulatus male Bft15b	exon	Scaffold_618 897729..897846 -
EsuBft882_5a-0001-exon	agat-exon-70015	Ectocarpus subulatus male Bft15b	exon	Scaffold_618 898832..899177 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft882_5a-0001-exon	agat-three_prime_utr-22653	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_618 890275..890672 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft882_5a-0001-cds	EsuBft882_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_618 890673..890842 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft882_5a-0001-exon	agat-five_prime_utr-14668	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_618 899158..899177 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_618:890275..899177-
coding sequence from alignment at Scaffold_618:890275..899177-

spliced messenger RNA

>EsuBft882_5a-0001 ID=EsuBft882_5a-0001|Name=EsuBft882_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1507bp|location=Sequence derived from alignment at Scaffold_618:890275..899177- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CATCGCACTCCAACTTTCGTATGCTCTGCAACCGCCAAGTCATGACGAGG
CTCATGTACCACCTCCTCATCTTAGCCTTATGCCGTCGTATAGTCGTTCG
GGGGTTTGGCCTCTTGCCGCCGCTTCTCTTGTCGCAATCTAGAGGCGGCG
TTACACCCCGAAGTTCCTGCCGCCCCAGGGATCGTGTCATCATGACGGGC
GCGTTTTGGGAAGGGATCGTGCAGGGCGTTGGCATGAAGACGCCGACACC
TCCGACGGCCAAGGAGAAGGGCCCCGTACTCATATGCCCAGCGCAGCTGA
GCGTTCCGGGTGACTACAGACAGATGGTCACAGAGCTGAAGAAGAGGGGC
TTCCCCGCGTATTGCGCAGACCTGACGAGATTTGGGTGGATCACGGGGTT
GCTTCCCTCGGCACTGTCGCCGGAGTACGTGAAGGGCGAGCTCACCCCGG
CCAACACCCTGAAGTTTTACTACGAGGCAATAGATCGGGCGCTGGAAGAA
ATAAAAGAGAGACATCCCGGGCAGGGGATGCATGTCATCGGGCATAGCAT
AGGGGGCTGGGTTGCCCGCGCTTGGCTCGCGGAGGGATGTGCCGACGCAG
ACCGAGAAAATGTGCTCAGTCTCACGACGCTAGGAACTCCAAACACGGGC
CCCCCGGAAGATGCCGGGCTATGGGCCGCCGTGGACCAAACGCGGGGGCT
CCTGAAGTACATCAACGCTAGATTTCCAGGGGCGCACGTGGAGGGCGTAC
GGTACACGAGCGTCGCGGGGACTGCGCTGGAAGGAAAGCTCCCAGGGAGC
GTGGAGGAAATGCTTGCGTACGTCAGCTACCTACCTCTCTGCGGGGACGG
CGGGTCTCGCGGTGACGGCATCATTCCGCTCGACGTGGCTGTACTGGAGG
GCTCCACCGTTGTCGAATTGCCATCGTCCAAACATTCAGGCTTTATTCCC
TTCCCTGGAGACGCGATCGACCTTGGCGAGGATTTCCTGTGGTATGGAAG
CAGCAGTTTAATGGATTCTTGGGTGGGCAACCTTGATGCGGCGGAACAAA
ATAGAAGGGGTACAAGACGACAAGCAGCCCGGAGGAAATCGGGAGGAAAG
CAGTGGTGACCCTCGCATATCACCACGATGGTTTGACGCCTGTCACTCCA
GCAGAATCTTACATGTGTTCATCTGACTGTAGGCTGGTATGCGACATGTT
CCCGTCCACATTGATTGTGCGAGCTTCAGATGAAAGGGAATGGTCGCAGG
TCAGAGCCGGGCGGTGTTTGAAATCATACGCTCGAGATGCCTTCCCTCGA
TAGCTTCATTATAATAGGCAGCATTGTTAATGTTGTTGTGCCAATGAATC
CTCGTACTAGAAAGAGGGCATGGCTCTCTGACAAGGTCCTTAGCACAAGG
CTTCTCCGAGAATACCTAACCGCAATTCCGTTCGGGTTTGCCGTTGGTTT
GGTCGTCGCACATCCACGATGGGTTCGTGCTAGTCTCATCTACTCGTTTA
TCTGCTC

protein sequence of EsuBft882_5a-0001

>EsuBft882_5 ID=EsuBft882_5|Name=EsuBft882_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=362bp
MLCNRQVMTRLMYHLLILALCRRIVVRGFGLLPPLLLSQSRGGVTPRSSC
RPRDRVIMTGAFWEGIVQGVGMKTPTPPTAKEKGPVLICPAQLSVPGDYR
QMVTELKKRGFPAYCADLTRFGWITGLLPSALSPEYVKGELTPANTLKFY
YEAIDRALEEIKERHPGQGMHVIGHSIGGWVARAWLAEGCADADRENVLS
LTTLGTPNTGPPEDAGLWAAVDQTRGLLKYINARFPGAHVEGVRYTSVAG
TALEGKLPGSVEEMLAYVSYLPLCGDGGSRGDGIIPLDVAVLEGSTVVEL
PSSKHSGFIPFPGDAIDLGEDFLWYGSSSLMDSWVGNLDAAEQNRRGTRR
QAARRKSGGKQW

mRNA from alignment at Scaffold_618:890275..899177-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft882_5a-0001 ID=EsuBft882_5a-0001|Name=EsuBft882_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=8903bp|location=Sequence derived from alignment at Scaffold_618:890275..899177- (Ectocarpus subulatus male Bft15b)
CATCGCACTCCAACTTTCGTATGCTCTGCAACCGCCAAGTCATGACGAGG
CTCATGTACCACCTCCTCATCTTAGCCTTATGCCGTCGTATAGTCGTTCG
GGGGTTTGGCCTCTTGCCGCCGCTTCTCTTGTCGCAATCTAGAGGCGGCG
TTACACCCCGAAGTTCCTGCCGCCCCAGGGATCGTGTCATCATGACGGGC
GCGTTTTGGGAAGGGATCGTGCAGGGCGTTGGCATGAAGACGCCGACACC
TCCGACGGCCAAGGAGAAGGGCCCCGTACTCATATGCCCAGCGCAGCTGA
GCGTTCCGGGTGACTACAGACAGATGGTCACAGAGCTGAAGAAGAGGTAT
GGATACACACCGTCACGAGGCTTCACCTACATGCTGCGTGTTGCGGTCTT
CGCTCTACACCCACATCCACGACATGTCCTGCTGTCTCTGCTGTTCTTGT
GTGTCTGAAACTGCTGTTGCACTCAGAACAATTAGGATGTCCATGCACCA
GTTGCGCGGCACTTGGCAAAAACAACATCACGTCGATGTTCACCATTTTG
CGCAGTTGTCCCGCTTCATGACCTTCATCAGTAACCTACAGCAATTAGGC
ACACTCGTTCTGACTTGTATCAACCCGCCACCACCGAGCGAGTGCAACAC
CGAGGAAGGAGACTTGCGCTTGCTTCTGCCAATGTAACAAGATACCGCGA
TTGCACCAGAGATCCATATGATCATTGCGTTCTGACATGGGATCCAAGAC
CGCTTTTTTTGACATGCTATGCCGTAGTCGTGGCAACAACGATCCGTGTG
CTGGCGTTCCGCAGCTGATGCGAGAAATTCTCACAGCGCCACCTACGTAC
CAACCTTTTCAATTGAAAACCCTTCTGTCTGCCGACTCTGCCTCCGATGT
TAGCGCAGCTCGCATCTCACCAATATACCCGCGACCGTGGTCGATGTTCG
TGGCTTGACTACGTGTAGACTACTGCTACGCATGTTGTCACCCGCGAGTG
TACGGAGGCGTGTTTTGCACGCGGGTTGAATTTCCTCGCGCTGTGGACCA
GCCTTGGCACATAAGCCTCTTTGGCCGCGGGACCTCATACTTCAATATTA
GCCAACCAGAGCGCCTTGAAACCAGCGGTCTTCGTCTCTGGCCATTAACA
TTTGGCCTGCAAGCCACTAGCCCATTCTGGTATTTTCGTGCATATGACGA
GAGTGCTGGAAACCCGCAATATCAGGCTTGTTCGCAAATACTTGAAAGGA
ATCCTATACCGTGAAGAAGCTGTGTGCCCTGTACCCATTGTCCTCTTTTC
GCCGGTCGACGCATCGCGATGTATTGATTAGGGGCTTCCCCGCGTATTGC
GCAGACCTGACGAGATTTGGGTGGATCACGGGGTTGCTTCCCTCGGCACT
GTCGCCGGAGTACGTGAAGGGCGAGCTCACCCCGGCCAACACCCTGAAGG
TGGGCCTTTGATGGATCACCACTCCGTGTTAATGGGGATCAGGCTGCGGT
GGGATGATTTCTTGCTGTCCGTCCCGTGGCTACAGCGAGATCCCCAGAGG
GTTGTGCAGCAATGTATTCACACTCACAGGGCGTCAACACATAACCGGCC
GACAGGCCTCACACATGTGTATCCTCGCAAACTCGGGCATGAAAGGAGGA
CCAGGAACAGAATAAATCATGGATCGGCACACGTGTTTGGAACCTTTTTT
TCTCGCCTCATAAGCCCTTCGTGGGACGACACAAAGTGACTCTTCCCCCG
CCTCGCCCAACAGAACCTCGTCGTCGCCCACGAGCATATACCGGTTGGGT
GAAGTGCCCCGGGTGCTTTGTAGTGATGTGAAGGTTCATGGCTTGTAGAG
TAACGGTCGGACATGAATTGTTGTACTCCGAACGATTTCTGTACAGTTTT
ACTACGAGGCAATAGATCGGGCGCTGGAAGAAATAAAAGAGAGACATCCC
GGGCAGGGGATGCATGTCATCGGGCATAGCATAGGGGGCTGGGTTGCCCG
CGCTTGGCTCGCGGAGGGATGTGCCGACGCAGACCGAGAAAATGTGCTCA
GTCTCACGACGCTAGGAACTCCAAACACGGGCCCCCCGGAAGATGCCGGG
CTATGGGCCGCCGTGGACCAAACGCGGGGGCTCCTGAAGTACATCAACGC
TAGATTTCCAGGGGCGCACGTGGAGGGCGTACGGTACACGAGCGTCGCGG
GGACTGCGCTGGAAGGTATAAGAAACTCATACCATGGGGTTTGTCGTCCT
GTGTTGGGTCCGCTTTTGACACGCGTGGATCGGCGTGGGCTTGCAGTTCC
ATTGCAGCACGGTTGCATGCGGGAGGGTGACTAGGTTTTTCGATCGGTTT
GGGGGTGTACATCAGTCAGCATGTCTCGCGTATTTGCTGTTGGAGGCGCA
TGAGACTTTGTTTTTTTCTCCAACGCTTACCCCCGGCCGCGTTTGCTGCT
AGAAGACACTGCACGCTTGTCCTCGTGGTACGTGTCTCTTCCCAAAAGTG
TTAAGCCCGTTCATTTCTCTGTCGTCCGAACCTTGCATACAGGAAAGCTC
CCAGGGAGCGTGGAGGAAATGCTTGCGTACGTCAGCTACCTACCTCTCTG
CGGGGACGGCGGGTCTCGCGGTGACGGCATCATTCCGCTCGACGTGGCTG
TACTGGAGGGCTCCACCGTTGTCGAATTGCCATCGTCCAAACATTCAGGT
GAGTTTTTGCGGCACCTTCCCCCCGACCGGCGGATTGGGCGTACTCTTAT
GTTTTGCATGCCTTAGCGGTTAGACCATTGACCACGCGTCCTCGAGAGGA
CGGAGCATTGTTCCCACAGGACCTATCACCGATGGCCAATCGTTCCTTTC
TACTTTGCCAAAGGTGGCTCAAAAATGTCTTGCCTAGTCTGTCTATCCTA
CCGATATCCCTTCCCGCCCTTTCAACCCACCTCCTATGCCCCAGTACAGC
TACCGTCCTTTCCTCTCTATTCCATGCCTCAAACATGCCCCTGTACGTCC
CATCTATTTTTCCCAGCTCAGTCACGTACACTCCCCTCTCCTTCTCGTAC
AACGGACATTCCGCGACTACATGAACACGGCCTTCGCATTCGAAACCGCA
ATCACACTTGAACTCGTCGTCTTCGTCGTCTACCGTCCTATGTCTTCGTC
GACGTTCTCGAAGGCCTATGTCCCCGGTCCTGAATTTGACCTTAAGCTTT
GTTCCTGCATCCATTGGTCCATGTAGGTAATCCTTGAACCCTATTCCTTC
CTTCAACATTCCATACACTTCTAGACCCTCCTTATCCTTGGTTTCTTTAC
TCAGATTCTGTTCTTCTCTCTCGGCACAAGCAACAGATATCTTCTCCTTG
AACCCCTGTAGACCCTCCGTTTCCAGCGTTTCATCTTCGTCGATGTCGAG
CCCCTTCCATACGTCCTCTACAACCTTGACCCATTCCGTGGGTTGTCTAC
CCCTCTTTTTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNAGCTATCCTCACTCAACACGTCTATGTGTC
CGGCAATCTCCAATACAAATCACTGGTGAGGTCTCAGTATGTGTCTTTCC
TCACTCAAAGCGTCATGTGTCCGGCACTATCCAACATCACTCAACTCGTG
AGGTTTCAGTATGTAGCTATCCCCACTCAGCGCGTCTATGTGTCTGGCAA
ACTCAAAAACCAATCCATCTGTGAGGTTTCAGTATGTAGCTATCCTCACT
CAACACGTCTATGTGTCCGGCAATCTCCAATACAAATCACTGGTGAGGTC
TCAGTATGTGTCTTTCCTCACTCAAAGCGTCTACGTGTCCGGCACTATCC
AACATCACTCAACCTGTGAGGTTTCAGTATGTAGCTATCCCCACGAAGCG
CGTCCATGTGTCCGGCAAACTCAAAAACCTATCCATCTGTGAGGTTTCAG
TATGCAGCTATCCTCACTCATCACGTCTATGTGTCCGGCAATCTCCAATA
CAAATCACCGGTGAGGTCTCAGTATGTGTCTTTCCTCACTCAAAGCGTCT
ACGTGTCCGGCACTATCCAACATCACTCAACCTGTGAGGTTTCAGTATGT
AGCTATCCCCACGCAGCGCGTCTATGTGTCTGGCAAACTCAAAACCAATC
CATCTGTGAGGTTTCAGTATGTAGCTATCCTCACTCATCACGTCTATGTG
TCCGGCAATCTCCAATACAAATCACCGGTGAGGTCTCAGTATGTGTCTTT
CCTCACTCAAAGCGTCTATGTGTCCGGCACTATCCGACATCACTCAACTC
GTGAGGTTTCAGTATGCAGCTATCCTCACTCAAAACGTTTGTGTGTCCGG
CAATCTCCAATACAAATCAACCTGTGAGGTTTCAGTATGTGTCTTTCCTC
ACTCAAAGCGTCTATGTGTCCGGCACTATCCAACATCACTCAACTCGTGA
GGTTTCAGTATCCCCACTCAGCGTCTATGTGTCTGGCAATCTCAAAAGAC
CGGCGGATTGGGGACGCACAAATAGGGCGGGGCGGGCGGCGGGTCGCAGA
AAAAACGTTTCTCGCGCTTACCTGTGGTGGGGTTTTCTTGGTCCTGGGTC
TGGTTGACAGCGCAGCCAGACGTTGTCCTCGAACGGTCCGGACTGTTCCT
ACAGTAGTACAACGATGTTTGTTTTGGGACAACAATGTGCGAGGATCTGG
ACACCGAATGTGCGGGGCACCCACGCTGTTGATACCTGGATGTGTGATTT
TGCCCACTGCACTGAGAACAAGTATAGCTAGAAGAACAGCACGAACACAT
TTCTTGTGCAAGCCTTTGGAAAGTAGTCTGGCGACAACTGTTTGTTTACG
ATCGATCGCCCGCTTCTGTGCCGGTGAATCGACAGGCTTTATTCCCTTCC
CTGGAGACGCGATCGACCTTGGCGAGGATTTCCTGTGGTATGGAAGCAGC
AGTTTAATGGATTCTTGGGTGGGCAACCTTGATGCGGCGGAACAAAATAG
AAGGGGTACAAGACGACAAGCAGCCCGGAGGAAATCGGGAGGAAAGCAGT
GGTGACCCTCGCATATCACCACGATGGTTTGACGCCTGTCACTCCAGCAG
AATCTTACATGTGTTCATCTGACTGTAGGCTGGTATGCGACATGTTCCCG
TCCACATTGATTGTGCGAGCTTCAGATGAAAGGGAATGGTCGCAGGTCAG
AGCCGGGCGGTGTTTGAAATCATACGCTCGAGATGCCTTCCCTCGATAGC
TTCATTATAATAGGCAGCATTGTTAATGTTGTTGTGCCAATGAATCCTCG
TACTAGAAAGAGGGCATGGCTCTCTGACAAGGTCCTTAGCACAAGGCTTC
TCCGAGAATACCTAACCGCAATTCCGTTCGGGTTTGCCGTTGGTTTGGTC
GTCGCACATCCACGATGGGTTCGTGCTAGTCTCATCTACTCGTTTATCTG
CTC

Coding sequence (CDS) from alignment at Scaffold_618:890275..899177-

>EsuBft882_5a-0001 ID=EsuBft882_5a-0001|Name=EsuBft882_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1089bp|location=Sequence derived from alignment at Scaffold_618:890275..899177- (Ectocarpus subulatus male Bft15b)
ATGCTCTGCAACCGCCAAGTCATGACGAGGCTCATGTACCACCTCCTCAT
CTTAGCCTTATGCCGTCGTATAGTCGTTCGGGGGTTTGGCCTCTTGCCGC
CGCTTCTCTTGTCGCAATCTAGAGGCGGCGTTACACCCCGAAGTTCCTGC
CGCCCCAGGGATCGTGTCATCATGACGGGCGCGTTTTGGGAAGGGATCGT
GCAGGGCGTTGGCATGAAGACGCCGACACCTCCGACGGCCAAGGAGAAGG
GCCCCGTACTCATATGCCCAGCGCAGCTGAGCGTTCCGGGTGACTACAGA
CAGATGGTCACAGAGCTGAAGAAGAGGGGCTTCCCCGCGTATTGCGCAGA
CCTGACGAGATTTGGGTGGATCACGGGGTTGCTTCCCTCGGCACTGTCGC
CGGAGTACGTGAAGGGCGAGCTCACCCCGGCCAACACCCTGAAGTTTTAC
TACGAGGCAATAGATCGGGCGCTGGAAGAAATAAAAGAGAGACATCCCGG
GCAGGGGATGCATGTCATCGGGCATAGCATAGGGGGCTGGGTTGCCCGCG
CTTGGCTCGCGGAGGGATGTGCCGACGCAGACCGAGAAAATGTGCTCAGT
CTCACGACGCTAGGAACTCCAAACACGGGCCCCCCGGAAGATGCCGGGCT
ATGGGCCGCCGTGGACCAAACGCGGGGGCTCCTGAAGTACATCAACGCTA
GATTTCCAGGGGCGCACGTGGAGGGCGTACGGTACACGAGCGTCGCGGGG
ACTGCGCTGGAAGGAAAGCTCCCAGGGAGCGTGGAGGAAATGCTTGCGTA
CGTCAGCTACCTACCTCTCTGCGGGGACGGCGGGTCTCGCGGTGACGGCA
TCATTCCGCTCGACGTGGCTGTACTGGAGGGCTCCACCGTTGTCGAATTG
CCATCGTCCAAACATTCAGGCTTTATTCCCTTCCCTGGAGACGCGATCGA
CCTTGGCGAGGATTTCCTGTGGTATGGAAGCAGCAGTTTAATGGATTCTT
GGGTGGGCAACCTTGATGCGGCGGAACAAAATAGAAGGGGTACAAGACGA
CAAGCAGCCCGGAGGAAATCGGGAGGAAAGCAGTGGTGA