EsuBft882_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft882_4a-0001
Unique NameEsuBft882_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_618contigScaffold_618:883740..885142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005092035.1
ProteomeIdEsuBft882_4
Protein domainsPTHR19446
Protein domainsSSF56672
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Notetransposon tx1 uncharacterized 149 kda protein os:xenopus laevis pe:3 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl33208|Metazoa
Length1355
Hectar predicted targeting categorymitochondrion
Evalue3.78e-56
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria
Date last modified2016-06-13
Date creation2016-06-13
DescriptionRibonuclease H protein
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0006259
EC3.1
GO0004518
GO0016740
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft882_4aEsuBft882_4aEctocarpus subulatus male Bft15bgeneScaffold_618 883740..885142 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft882_4a-0001-exonagat-exon-70011Ectocarpus subulatus male Bft15bexonScaffold_618 883740..884344 +
EsuBft882_4a-0001-exonEsuBft882_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_618 884393..885142 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft882_4a-0001-exonagat-five_prime_utr-14667Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_618 883740..883915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft882_4a-0001-cdsEsuBft882_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_618 883916..884344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft882_4a-0001EsuBft882_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_618 883916..885142 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft882_4a-0001 ID=EsuBft882_4a-0001|Name=EsuBft882_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1355bp|location=Sequence derived from alignment at Scaffold_618:883740..885142+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGAAGCGCAGCACGAGATTTCCGAGGCGTCTAAGGAGATTAAGGCGGCCC
AGCAGCAACTGCGTGGGGCCTTCAAGAACAGCGCCTTCGAGGCGACCCTG
AAGGCAATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGCGAGGTGGAG
CGCACTGGAAACGTTCTTCGAGGGCAATGTACGGCAGCTCGAGAAGAAGA
GCCGCGAGGGGGATCAGGCGGGTTTCTACACTGAAGATGATCGACGTCGA
AGGTAAGAAGTCGGTCACCTCTCAGAACATCAAGGACGAGGACGGCAAGG
TCCTTCGGGACCCCACGTTTATTCGCCAACGGTGGGCACGGTGGTTCCAC
AAGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATGCGGCTGACAA
GGTCAAGCGGTGGCCCACGTGCGTGCCACTCGACGACATCCCATCTCTAC
TTGAGGTTGAGGAAGCGGTACGGGAAATGGCCAACAGAAAGGCCGTCGGG
CCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACGGAGATCA
AGGTCTCCTCCGCGAATTCCACGCCATTGTCGTGGACGTGTGGCAGACTG
GGGACGGGGACATGCTGGAGTGCGGCAACTATCGGGGCATCTTTCTCGTC
GCACACGCCGGCAAGGTGCTGCCTAAGGTCGTCGCTACACGACTGAGCCA
CTACTGCGAGCGAGAGGGCATCCTCCCGGAGGAGCAGAGCGGTTTCCGCC
CGCACCGGTCGACGCTCGACATGCTGTTCGCCATCCAGCGGCTCCATGAG
CTCGCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGCTTCGTCGACCTCAC
CAAGGCATACGATTCGGTGGACCGAGACCTACTGTGGGACGTGCTCCGAC
GCTTCGGCGTGCCCCCGAAGATGCTGGCGGTCATTCGCCACTTCCACGAG
GGCATGAGGGCGCGCGTCCGAACGGACGACGGGCAGTACTCGGAATGGTT
CGACGTGAGCCAAGGCCTCCGACAGGGATGCAACAAGGCCCCGCTGCTGT
TCGACGTGTTCTTTGACGCGATGCTCATGGTCGCCGTGGCCGAGTTCGAC
AAGGACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACAAGTGGA
GTACACGGGCAAGAAGGGCAGGTCGGCGGGGAAGAAGACGACGGTGGTGA
CGGACGCGGAGGCCTTGTGGGCCATGCTCTACGCTGACGACGCGGCCATC
GTCTCGCGGTCGCCGAAGAGTCTCGAGAAGATGATGTCGGTCATCGTGCG
CGCGGCCGGCCTGTTCGGAACCTCCCTGCCTACTCTGCTGTGTTGGGTAC
CTTGA
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protein sequence of EsuBft882_4a-0001

>EsuBft882_4 ID=EsuBft882_4|Name=EsuBft882_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=392bp
MYGSSRRRAARGIRRVSTLKMIDVEGKKSVTSQNIKDEDGKVLRDPTFIR
QRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVRE
MANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDGDMLECG
NYRGIFLVAHAGKVLPKVVATRLSHYCEREGILPEEQSGFRPHRSTLDML
FAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKML
AVIRHFHEGMRARVRTDDGQYSEWFDVSQGLRQGCNKAPLLFDVFFDAML
MVAVAEFDKDPKVTADMVKIGTQVEYTGKKGRSAGKKTTVVTDAEALWAM
LYADDAAIVSRSPKSLEKMMSVIVRAAGLFGTSLPTLLCWVP
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mRNA from alignment at Scaffold_618:883740..885142+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft882_4a-0001 ID=EsuBft882_4a-0001|Name=EsuBft882_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1403bp|location=Sequence derived from alignment at Scaffold_618:883740..885142+ (Ectocarpus subulatus male Bft15b)
CGAAGCGCAGCACGAGATTTCCGAGGCGTCTAAGGAGATTAAGGCGGCCC
AGCAGCAACTGCGTGGGGCCTTCAAGAACAGCGCCTTCGAGGCGACCCTG
AAGGCAATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGCGAGGTGGAG
CGCACTGGAAACGTTCTTCGAGGGCAATGTACGGCAGCTCGAGAAGAAGA
GCCGCGAGGGGGATCAGGCGGGTTTCTACACTGAAGATGATCGACGTCGA
AGGTAAGAAGTCGGTCACCTCTCAGAACATCAAGGACGAGGACGGCAAGG
TCCTTCGGGACCCCACGTTTATTCGCCAACGGTGGGCACGGTGGTTCCAC
AAGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATGCGGCTGACAA
GGTCAAGCGGTGGCCCACGTGCGTGCCACTCGACGACATCCCATCTCTAC
TTGAGGTTGAGGAAGCGGTACGGGAAATGGCCAACAGAAAGGCCGTCGGG
CCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACGGAGATCA
AGGTCTCCTCCGCGAATTCCACGCCATTGTCGTGGACGTGTGGCAGACTG
GGGACGTACCATAGCAGTGGAAGGATGCCGCCATCAAAGTGCTGTTCAAG
AAGGGGGACATGCTGGAGTGCGGCAACTATCGGGGCATCTTTCTCGTCGC
ACACGCCGGCAAGGTGCTGCCTAAGGTCGTCGCTACACGACTGAGCCACT
ACTGCGAGCGAGAGGGCATCCTCCCGGAGGAGCAGAGCGGTTTCCGCCCG
CACCGGTCGACGCTCGACATGCTGTTCGCCATCCAGCGGCTCCATGAGCT
CGCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGCTTCGTCGACCTCACCA
AGGCATACGATTCGGTGGACCGAGACCTACTGTGGGACGTGCTCCGACGC
TTCGGCGTGCCCCCGAAGATGCTGGCGGTCATTCGCCACTTCCACGAGGG
CATGAGGGCGCGCGTCCGAACGGACGACGGGCAGTACTCGGAATGGTTCG
ACGTGAGCCAAGGCCTCCGACAGGGATGCAACAAGGCCCCGCTGCTGTTC
GACGTGTTCTTTGACGCGATGCTCATGGTCGCCGTGGCCGAGTTCGACAA
GGACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACAAGTGGAGT
ACACGGGCAAGAAGGGCAGGTCGGCGGGGAAGAAGACGACGGTGGTGACG
GACGCGGAGGCCTTGTGGGCCATGCTCTACGCTGACGACGCGGCCATCGT
CTCGCGGTCGCCGAAGAGTCTCGAGAAGATGATGTCGGTCATCGTGCGCG
CGGCCGGCCTGTTCGGAACCTCCCTGCCTACTCTGCTGTGTTGGGTACCT
TGA
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Coding sequence (CDS) from alignment at Scaffold_618:883740..885142+

>EsuBft882_4a-0001 ID=EsuBft882_4a-0001|Name=EsuBft882_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1179bp|location=Sequence derived from alignment at Scaffold_618:883740..885142+ (Ectocarpus subulatus male Bft15b)
ATGTACGGCAGCTCGAGAAGAAGAGCCGCGAGGGGGATCAGGCGGGTTTC
TACACTGAAGATGATCGACGTCGAAGGTAAGAAGTCGGTCACCTCTCAGA
ACATCAAGGACGAGGACGGCAAGGTCCTTCGGGACCCCACGTTTATTCGC
CAACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACCAAGTCGCCGAC
CATCGACCTGCATGCGGCTGACAAGGTCAAGCGGTGGCCCACGTGCGTGC
CACTCGACGACATCCCATCTCTACTTGAGGTTGAGGAAGCGGTACGGGAA
ATGGCCAACAGAAAGGCCGTCGGGCCGGACGACCTACCGGCTGAGCTGAT
CAAGCTTTTCCTGGACGGAGATCAAGGTCTCCTCCGCGAATTCCACGCCA
TTGTCGTGGACGTGTGGCAGACTGGGGACGGGGACATGCTGGAGTGCGGC
AACTATCGGGGCATCTTTCTCGTCGCACACGCCGGCAAGGTGCTGCCTAA
GGTCGTCGCTACACGACTGAGCCACTACTGCGAGCGAGAGGGCATCCTCC
CGGAGGAGCAGAGCGGTTTCCGCCCGCACCGGTCGACGCTCGACATGCTG
TTCGCCATCCAGCGGCTCCATGAGCTCGCGAGGAAGAAGAGTACTGCGGT
GTTCGCGTGCTTCGTCGACCTCACCAAGGCATACGATTCGGTGGACCGAG
ACCTACTGTGGGACGTGCTCCGACGCTTCGGCGTGCCCCCGAAGATGCTG
GCGGTCATTCGCCACTTCCACGAGGGCATGAGGGCGCGCGTCCGAACGGA
CGACGGGCAGTACTCGGAATGGTTCGACGTGAGCCAAGGCCTCCGACAGG
GATGCAACAAGGCCCCGCTGCTGTTCGACGTGTTCTTTGACGCGATGCTC
ATGGTCGCCGTGGCCGAGTTCGACAAGGACCCCAAGGTGACGGCGGACAT
GGTCAAGATCGGGACACAAGTGGAGTACACGGGCAAGAAGGGCAGGTCGG
CGGGGAAGAAGACGACGGTGGTGACGGACGCGGAGGCCTTGTGGGCCATG
CTCTACGCTGACGACGCGGCCATCGTCTCGCGGTCGCCGAAGAGTCTCGA
GAAGATGATGTCGGTCATCGTGCGCGCGGCCGGCCTGTTCGGAACCTCCC
TGCCTACTCTGCTGTGTTGGGTACCTTGA
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