EsuBft882_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft882_2a-0001
Unique Name	EsuBft882_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_618	contig	Scaffold_618:874676..876933 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft882_2
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	220
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft882_2a	EsuBft882_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_618 874676..876933 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft882_2a-0001-exon	EsuBft882_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_618 874676..876688 +
EsuBft882_2a-0001-exon	agat-exon-70005	Ectocarpus subulatus male Bft15b	exon	Scaffold_618 876746..876933 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft882_2a-0001-cds	EsuBft882_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_618 874676..875020 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft882_2a-0001-exon	agat-three_prime_utr-22651	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_618 875021..876688 +
EsuBft882_2a-0001-exon	agat-three_prime_utr-22652	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_618 876746..876933 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft882_2a-0001	EsuBft882_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_618 874676..875020 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_618:874676..876933+
coding sequence from alignment at Scaffold_618:874676..876933+

spliced messenger RNA

>EsuBft882_2a-0001 ID=EsuBft882_2a-0001|Name=EsuBft882_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2201bp|location=Sequence derived from alignment at Scaffold_618:874676..876933+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGAACTGGTATCACGTTTTCCCAAGCGGGAGTTGATGCGCGCCG
CTTGAAGGCTCTCGAGGACAAGGACTACCCTGCCTTGAAGCGAATATGCG
TCGCTCACGTCAACAAGCTGAAACAGGCGGCTGCGGTGAAGCGCAAGCTT
GCCGCAAAGCAAAAATCGGCAGAGAAAGAAGCGAAGAAGCAAGCGCGGAT
GCTGGAAAACGAAGAGGAGCGGATGTGTAGCATTCGGCGGTGCCGTGACC
GGACTTCTGGCAGGCGGAAATGCACAGAGAGTGAGCTGTACCCAGCTCGT
GCATGTGGTGACAAAGAAGTCTCGGGCTTGTCCAAAATATTGTGACGTGT
CCGCCCATCCTGCTGTTTTGATTGGTTGGAAAATGTTTTAAAAGGTCTAT
TCGGCTAGCGACCAAGGACATTTTTTCGCCCTGAAAAACTTATAATCTCG
AGGTCTAACTGTGGTATCAATTAAGACGTGATGATTGATTTGAATGTGCT
ACTTGAAGACATGAGGATGGTTGAATGGAGCTCACGGTTTTATTGGGTAC
TCCTTGCAAGAAAGGACATGCAGTGTGGATGAGTTCTTACAGGAAATCCC
GAGAAAATAAAACTTGAAACATCAAAACTAGGACACTTAACAGTAGAGTA
ATGGATGATGGATAAGAACGGCAACGAGTTGCCCAATTATCCATTAGCAA
GGGGGAACACAGTGACCCGTGTCCCTTGCAAAATATCATTGCTGCATTGC
TGCATGCAACCGAATTCTTCTAATCTCGGACCACAAATGACGTCACATGA
CCAAGTGAAATTTCTTCTAAAACGTAGACCAAATGACGTCACATGACCAG
GTGAAAATACAACACCTCGATGGCCTCCAAATCTGCAGTTGAGCCCATGG
TCGGGAAGCCCCTTTCGCACATTCCCAGTTTGATCCCTACCGCAAGCCTC
CCATTGTGTTCGGAGCAGCCGGCATTCGGATCCCTGCCGTCGTACCACAT
AAATAGCCCCTCCGATAGGACTTGAGGCAAGGCGGGAAGGCTGTATCGGG
TTTCGTGCAAAGGTGCTCTCCCATATTGACCTCGCGGCTGGAACACATCG
TCTTCTCTGCTGATCGCTGTGTATCCAGGTGGAACAACATATTCGCCTGA
TTGAGAGCGAAGTATCTGATTGAGAGCGAGAGCCAAAAAAATTGAAATTT
CGGGTCCAGACGCCTCTTGCCATTTCTTGGCAAGTAGGGGACGGGCTATT
CCAAGAAGCGGTGCAAATTGAAGGTCTCATCAGCAGCTTCGCGAGCATAT
GCGTGTCATCGTCATCGGATGCTGCAGCGAGGAGCTAGACAAGTTGCTAG
ATTTGCCCAGATTGGCTATTTCTGCTCAAACTGTTTCAGGGCGGTATCGC
GTCGGGCGGTGGGCTCTGCTGTAGCTTCTGCTCCCCGCTGTAGCTCCACA
ACGAGAGACTCCCACAGGATGACCAGGGTAGCGGCTTGAAGCTACGGGCT
AGCCCTTCAATTCAAGCTACACAGCAAGCTCCACCTCTCAGTGGTAGTCC
GGCTACAGCGTATCGCGCAATCTCGCTCTCAATCAGATGCTACGCTCTCA
ATCAGGCGAATATGTTGTTGTGGGTAATTCTACGTGTTGTATCCTTCGCC
GTACTCCGTAACATGTCCACACCACTGCTCCACACGGAGAGACCAACTGC
CACTCGCTGCTACTGCTGACCTTCATGACGGATGCTCTTCAACGGGATTA
AGACATGGTTGCGACAAGATGTCTCGGCAAACCGCTCTGAGGAACACCAG
GGAAGTTGACAACAATCGCCACATTGGATGTATATCATTTGAACACTTTC
CGTGCTCTACTGATGCTGATTACCAAGACCAAACATACCAGGAAACCAGC
TAACACGATACAAACTGAACGCTATGCCGTACCTACCATGCACCAGGTGT
ACCATTCTCTTCTACTGTAAGCATCACTGATACGCTACCCCAAATTGTCA
AATAAGTTTCTTTGTTTGAAAAACGAGTGATGTACTGCTGCTGTAGCCCT
CTTTTCATCTTCCATGATTTTTACATCAATATTATTTATTTCTCCTTAAA
TTCCTAAAACCAGCAAGCTGTCAATAGACACTGCGCCGTGTCCCCTGTGA
AGGTTACATCTTACAGTATACGACACACTACGGAGGGATTCTCCCCGATA
T

protein sequence of EsuBft882_2a-0001

>EsuBft882_2 ID=EsuBft882_2|Name=EsuBft882_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=114bp
MARTGITFSQAGVDARRLKALEDKDYPALKRICVAHVNKLKQAAAVKRKL
AAKQKSAEKEAKKQARMLENEEERMCSIRRCRDRTSGRRKCTESELYPAR
ACGDKEVSGLSKIL

mRNA from alignment at Scaffold_618:874676..876933+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft882_2a-0001 ID=EsuBft882_2a-0001|Name=EsuBft882_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2258bp|location=Sequence derived from alignment at Scaffold_618:874676..876933+ (Ectocarpus subulatus male Bft15b)
ATGGCGCGAACTGGTATCACGTTTTCCCAAGCGGGAGTTGATGCGCGCCG
CTTGAAGGCTCTCGAGGACAAGGACTACCCTGCCTTGAAGCGAATATGCG
TCGCTCACGTCAACAAGCTGAAACAGGCGGCTGCGGTGAAGCGCAAGCTT
GCCGCAAAGCAAAAATCGGCAGAGAAAGAAGCGAAGAAGCAAGCGCGGAT
GCTGGAAAACGAAGAGGAGCGGATGTGTAGCATTCGGCGGTGCCGTGACC
GGACTTCTGGCAGGCGGAAATGCACAGAGAGTGAGCTGTACCCAGCTCGT
GCATGTGGTGACAAAGAAGTCTCGGGCTTGTCCAAAATATTGTGACGTGT
CCGCCCATCCTGCTGTTTTGATTGGTTGGAAAATGTTTTAAAAGGTCTAT
TCGGCTAGCGACCAAGGACATTTTTTCGCCCTGAAAAACTTATAATCTCG
AGGTCTAACTGTGGTATCAATTAAGACGTGATGATTGATTTGAATGTGCT
ACTTGAAGACATGAGGATGGTTGAATGGAGCTCACGGTTTTATTGGGTAC
TCCTTGCAAGAAAGGACATGCAGTGTGGATGAGTTCTTACAGGAAATCCC
GAGAAAATAAAACTTGAAACATCAAAACTAGGACACTTAACAGTAGAGTA
ATGGATGATGGATAAGAACGGCAACGAGTTGCCCAATTATCCATTAGCAA
GGGGGAACACAGTGACCCGTGTCCCTTGCAAAATATCATTGCTGCATTGC
TGCATGCAACCGAATTCTTCTAATCTCGGACCACAAATGACGTCACATGA
CCAAGTGAAATTTCTTCTAAAACGTAGACCAAATGACGTCACATGACCAG
GTGAAAATACAACACCTCGATGGCCTCCAAATCTGCAGTTGAGCCCATGG
TCGGGAAGCCCCTTTCGCACATTCCCAGTTTGATCCCTACCGCAAGCCTC
CCATTGTGTTCGGAGCAGCCGGCATTCGGATCCCTGCCGTCGTACCACAT
AAATAGCCCCTCCGATAGGACTTGAGGCAAGGCGGGAAGGCTGTATCGGG
TTTCGTGCAAAGGTGCTCTCCCATATTGACCTCGCGGCTGGAACACATCG
TCTTCTCTGCTGATCGCTGTGTATCCAGGTGGAACAACATATTCGCCTGA
TTGAGAGCGAAGTATCTGATTGAGAGCGAGAGCCAAAAAAATTGAAATTT
CGGGTCCAGACGCCTCTTGCCATTTCTTGGCAAGTAGGGGACGGGCTATT
CCAAGAAGCGGTGCAAATTGAAGGTCTCATCAGCAGCTTCGCGAGCATAT
GCGTGTCATCGTCATCGGATGCTGCAGCGAGGAGCTAGACAAGTTGCTAG
ATTTGCCCAGATTGGCTATTTCTGCTCAAACTGTTTCAGGGCGGTATCGC
GTCGGGCGGTGGGCTCTGCTGTAGCTTCTGCTCCCCGCTGTAGCTCCACA
ACGAGAGACTCCCACAGGATGACCAGGGTAGCGGCTTGAAGCTACGGGCT
AGCCCTTCAATTCAAGCTACACAGCAAGCTCCACCTCTCAGTGGTAGTCC
GGCTACAGCGTATCGCGCAATCTCGCTCTCAATCAGATGCTACGCTCTCA
ATCAGGCGAATATGTTGTTGTGGGTAATTCTACGTGTTGTATCCTTCGCC
GTACTCCGTAACATGTCCACACCACTGCTCCACACGGAGAGACCAACTGC
CACTCGCTGCTACTGCTGACCTTCATGACGGATGCTCTTCAACGGGATTA
AGACATGGTTGCGACAAGATGTCTCGGCAAACCGCTCTGAGGAACACCAG
GGAAGTTGACAACAATCGCCACATTGGATGTATATCATTTGAACACTTTC
CGTGCTCTACTGATGCTGATTACCAAGACCAAACATACCAGGAAACCAGC
TAACACGATACAAACTGAACGCTATGCCGTACCTACCATGCACCAGGTGT
ACCATTCTCTTCTACTGTAAGCATCACTGATACGCTACCCCAAATTGTCA
AATAAGTTTCTTTGTAAATTCAAAAAAACGGCGGGAACACCTGCTGCCCG
TGAAATTCAAAAATCCATAGGTTTGAAAAACGAGTGATGTACTGCTGCTG
TAGCCCTCTTTTCATCTTCCATGATTTTTACATCAATATTATTTATTTCT
CCTTAAATTCCTAAAACCAGCAAGCTGTCAATAGACACTGCGCCGTGTCC
CCTGTGAAGGTTACATCTTACAGTATACGACACACTACGGAGGGATTCTC
CCCGATAT

Coding sequence (CDS) from alignment at Scaffold_618:874676..876933+

>EsuBft882_2a-0001 ID=EsuBft882_2a-0001|Name=EsuBft882_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=345bp|location=Sequence derived from alignment at Scaffold_618:874676..876933+ (Ectocarpus subulatus male Bft15b)
ATGGCGCGAACTGGTATCACGTTTTCCCAAGCGGGAGTTGATGCGCGCCG
CTTGAAGGCTCTCGAGGACAAGGACTACCCTGCCTTGAAGCGAATATGCG
TCGCTCACGTCAACAAGCTGAAACAGGCGGCTGCGGTGAAGCGCAAGCTT
GCCGCAAAGCAAAAATCGGCAGAGAAAGAAGCGAAGAAGCAAGCGCGGAT
GCTGGAAAACGAAGAGGAGCGGATGTGTAGCATTCGGCGGTGCCGTGACC
GGACTTCTGGCAGGCGGAAATGCACAGAGAGTGAGCTGTACCCAGCTCGT
GCATGTGGTGACAAAGAAGTCTCGGGCTTGTCCAAAATATTGTGA