EsuBft87_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft87_2a-0001
Unique NameEsuBft87_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_508contigScaffold_508:434070..437821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LKX2
ProteomeIdEsuBft87_2
Protein domainsIPR011992
Protein domainsIPR018247
Protein domainsPTHR10891
Protein domainsSSF47473
Protein domainsIPR002048
Ownerapollo_admin@sb-roscoff.fr
Notedynein 18 kda light flagellar outer arm os:chlamydomonas reinhardtii pe:1 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1168
Hectar predicted targeting categoryother localisation
Evalue1.02e-99
EggNOG OGsCOG5126@1|root,KOG0027@2759|Eukaryota
Ec32 ortholog descriptiondynein light chain
Ec32 orthologEc-11_005890.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
GOsGO:0005575,GO:0005623,GO:0005929,GO:0031514,GO:0042995,GO:0043226,GO:0044464,GO:0120025
DescriptionCalcium-binding protein
COG categoryDTZ
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Cross References
External references for this mRNA
DatabaseAccession
GO0005509
GO0009792
GO0044446
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft87_2aEsuBft87_2aEctocarpus subulatus male Bft15bgeneScaffold_508 434070..437821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft87_2a-0001EsuBft87_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_508 434764..437794 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft87_2a-0001-exonagat-exon-58087Ectocarpus subulatus male Bft15bexonScaffold_508 434070..434893 -
EsuBft87_2a-0001-exonEsuBft87_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_508 435121..435230 -
EsuBft87_2a-0001-exonagat-exon-58085Ectocarpus subulatus male Bft15bexonScaffold_508 437006..437113 -
EsuBft87_2a-0001-exonagat-exon-58086Ectocarpus subulatus male Bft15bexonScaffold_508 437696..437821 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft87_2a-0001-exonagat-three_prime_utr-22616Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_508 434070..434763 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft87_2a-0001-cdsEsuBft87_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_508 434764..434893 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft87_2a-0001-exonagat-five_prime_utr-14641Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_508 437795..437821 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft87_2a-0001 ID=EsuBft87_2a-0001|Name=EsuBft87_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1168bp|location=Sequence derived from alignment at Scaffold_508:434070..437821- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCCAGCCTGAGCCGGAGGTATGAAGGCATGGTCCTCACGCAGGAGGAGAT
CGACGGTTGCCGAGATGCTTTCCTCGCCTTCGATAAGGACCGGAGCGGCA
ATATTGATGTGTGGGAACTGCGACAGGTGTTGGAAGCGATGGGGCAAAAA
CCAACGGAAGAGGAGCTCTTTCAGATGATAAGCGAGGTAGACGACAACAT
GTCTGGCTCCATCGACTTTCCGGAGTTTCTCAAGGTGATCGAGAACCAGA
AGAGTCGGGCCCAAAACTTCGACGACGAGACGGACATGATCGACGCCTTC
GTCGCTTGTGGAGGGAGGATGGACAAAACGGGTCACGTCAAAAGGGGAGC
CTTGGTGAAAATCATCAAGGTTGACTTCGGCCTGACGATAAACATTGAGG
ACCTCATCAACAAGATCGACGCAGACGGGTCGGGCGAGATCGAGTTTCCC
GAGTTCAAGGCCCTCCTGTCCTGATGATGATATTGTTTCTTCTTGTTGTC
GGAACACGTGTTGCGCTTCCTGCTCGACACGCACCGGGGGTGCCTTACCT
CACACTCCACCAAGCAAACAGCAGCTGTGGCGTTGTTTGGAGCCCGCCGA
CGTTTTCAACATAGTGTACATAGATAGACAGTGTCGAGAGTGACCGATGA
TTCGGATGAATGTGATTTCTACCTACATAAGGCAGATCGTTTAAAAACTA
GAGAAATCCCCGTCGTTAGGCCTACATAGTAGATGGTAGATAGCTCACAA
GAGGCTTATAGACATGTTTCGATTCTTGTTTCGGTGGGGCGTGAATAAGG
TATGGCCCTCTCCGACGGATAGATATTCCGGAGAGACTCTCCTCGCGTAC
CGTACTCTAGTAGGTTTAGCGTCGACCCACTAAATTATTGTACCATATAT
GCCAAATTGTTGAAGATGTTGGAATGGACGTTCGTTGTCTTCAAACAAGG
GTGCGTGTGCGTGGACGTACTTCTGACCCGATCAGTCTTGCCCGGCTTCG
GTTGGTGTTTTGGTTGTCGCCGTTACCGTTGCCAGTAAGGTTCCATATTT
ACACCCGACGACCTTCTTAATTAGCGCAAGAAGGGCTACAGACATGATAG
TACTTCTTGATTAGTGCTCACTTGGCATGCTGGTGTTCTAGCCAGTATTA
AAGTCACTCGGTCCAATA
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protein sequence of EsuBft87_2a-0001

>EsuBft87_2 ID=EsuBft87_2|Name=EsuBft87_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=148bp
MVLTQEEIDGCRDAFLAFDKDRSGNIDVWELRQVLEAMGQKPTEEELFQM
ISEVDDNMSGSIDFPEFLKVIENQKSRAQNFDDETDMIDAFVACGGRMDK
TGHVKRGALVKIIKVDFGLTINIEDLINKIDADGSGEIEFPEFKALLS
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mRNA from alignment at Scaffold_508:434070..437821-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft87_2a-0001 ID=EsuBft87_2a-0001|Name=EsuBft87_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3752bp|location=Sequence derived from alignment at Scaffold_508:434070..437821- (Ectocarpus subulatus male Bft15b)
GCCAGCCTGAGCCGGAGGTATGAAGGCATGGTCCTCACGCAGGAGGAGAT
CGACGGTTGCCGAGATGCTTTCCTCGCCTTCGATAAGGACCGGAGCGGCA
ATATTGATGTGTGGGAACTGCGACAGGTGACTTGATCAGCTTGACACATA
CAACATTTTGTGGTCGGCGTTTTCAGCAAATAATGAGTCTGGACACACAA
CCCGGCGCACCGGTGGACTGCCACTGCAGCTGTTCCTACGCAACATTGTA
TCATCTGCCATGGTATGCGAATATTAACCATCTGGACGTACAGGGCTATG
CGCACATGGTCGGCCGAGCAGGGCATGGTGAGGTCGGAATACATCCCATT
CCCCTTACGCGCGGTGGCACAAGCCCGCGGCTGCGAGTTGTAGGTGGGAG
GTGTACATCGTCGGACAACGACCGAAAAGTGAATAGACGACAGCAGTAGT
AGTCGACACTTGGAGTACCTTCTACAGGATGGGTTTCTGATAGTTTCTCC
GCATGTATGGGGTGCACCGTGTGGCAGTGTGCACTCGATCGAGTCTTGTG
CGTTACTTCCAGCCAAGCCTACAAGTAGGCTGATCCGTATAGCAGACGTC
AATTGTTTCCAGTCTCTCTTGGTGGTGATGTTTCCGAATGCGAACCAGAA
CGCCCCGAGTCCTCACCGCGTTGCTCGCTCTCGAAAAACCGTCGCATTTG
TTTTGAAGGTGTTGGAAGCGATGGGGCAAAAACCAACGGAAGAGGAGCTC
TTTCAGATGATAAGCGAGGTAGACGACAACATGTCTGGCTCCATCGACTT
TCCGGAGTTTCTCAAGGTACAGCCGACCGACTGCGGTTGACTTGATGGGT
TTACCTATTCTGTTCTCCGATCGAAAGGTGCACCATCACCATATGGTGTG
TATTTGTGAGATTATAACAATCAATCATAGTGGACGCACATACTTTATAA
TAAGTATTCTTACACACAAGAAGTATATGCGACCCCGCTTCATCTGGCTG
AAGGTGAGAGATCGATGCCTGCGACTGATGTGGATCGAATGCCTTCGCTA
TCATCGTAGGTGACGTACTTATCTTGAAGTAATGATGAAATTGTGAGGGT
GGCACCACTGTTCGTTATGAAGTGGTGTCAGATGCGTGTCTCTTTCAACT
AGACTACATATACATATTTGCAGAGAACTACAGAGGTATTAATGTATAGA
TAGCACGATGATAATAGCGCTGCGTCACTCTACACATGGTGCTTGTACAT
ACCCTACCAGGCGGAGTGTAGGATAAGGCGTTCTTTGGTTCACCACAGAC
ATTCGTTTTGATATAGCCGTGTCTGCTGCATGCAGTGTGTAGAAAAAAGT
ACAACACACACAACTACCGTCAGTCCCTCTTTCGCTCGTTTTGTCCTTCC
CAGAGAACAACCGGAGTTGATCGGCCACCCGCATGTTGTAGTCTACACCA
TTCACGCTTCTTTTGGGGTGTAACAACACCCGGTCACTCAACCTAATACC
CCCCAGGGGTGGGAGGACCTGTAGCAAGCAAGCATGTTGACCTTCAATCA
ACAACGAGCATTCAATTCAAGTCATGTTGCCATCTCTACATTTCTACAAG
AATAGAGGGAGAAAGAGGGCTCTATATACCAGCGGTCGACTACCCCCCTC
CCCCCCCGCTCCCAAATATCTCACAGCGCTTCGCGCTTGCCAAAATGATA
TCCTGGTCCGGTGTAAACCCGGCGTGTTCCGTCCCGGCTCTGTAGGGATG
CAAGGTCAATGGTCTAACGCGGCATGATGCGTTTACTACATGATCACACC
CTTTCCCTTCCCAGGCAACCGGCGGGAAGTGATATCGATAGGATAGTTAG
GATATGGAAAACTTCTGAACCACCTTTGTCAAAGTAGGAAGGAACGATGG
GGCATCGGTGATCGGTCCTGTGGGAACCATGTTTCATCCTCTCGAGGACG
CGCGGCCAACGATCTAACCGCTGAGAGAGGCCATGTTAAATATTTCGCGT
CGTGATACGATTTCAGTCGATACTTCCGTACAGAAAAGGAGTTAACTGTT
GCACGTGAACGCACGGACGGACTATTTACATACTGTCCGTATGTATGTGC
CGGTGCGTATCTAGACGAAATTAATTCCATACGGGGAAACATTCTCAACC
TGGAAATTTAATAAAACATCTATAGTTTTCAACAGCCCGGCAGCGCACGC
GTTATCGACAGTCAGGACCCGTTCATGGCCGCACCCGGCCTTTGGGGCTA
CGTAGTAGACTATCTGTGTTTCCCCCGTGAATTTCACGTTACATTGGTCA
TTTCACTTCGAAGATGAAACGTTGAGTGTAGCACAACAACATTATCATAC
ATACAGGCTCTATCATTGTTCACAGGTGGTGATGACGGACTCGCCCGATT
CACACGCACGCCTCCACCAAGTAACGGCCGATTTAGCCCCAGAATGTCTT
CCATCTGTTTCTTTCATATTTACCATCATCGGGGAGTGAGTGTCACTCAC
ATGCGGTCTCCAGCATGATTTCCTTACCTCCTCGAGTGTGGCCTGCCGTG
CGTTCTTGCCATCCGCATGGATGGGGGTTCTGCCGGTGAAGGTGATCGAG
AACCAGAAGAGTCGGGCCCAAAACTTCGACGACGAGACGGACATGATCGA
CGCCTTCGTCGCTTGTGGAGGGAGGATGGACAAAACGGGTCACGTCAAAA
GGTAAACGGAGGCCCACACAACGACACCGCGAAAACAAATGTTGCACCCT
CCAGAAATTATTCCGTCCCGTAAATAATGCACTATTCGCTTTCCGATTTA
ATTTCAGGGCACTCAAAGATTAGTTTTAAGCTATCTATGTAGTTGAATCC
TAAGAGTGTAACAGCGTACCAATGACAATGTCGTCGTCACCGATTCTATT
TGTTCAACGTTGTTTTCCCTGTGTTCAGGGGAGCCTTGGTGAAAATCATC
AAGGTTGACTTCGGCCTGACGATAAACATTGAGGACCTCATCAACAAGAT
CGACGCAGACGGGTCGGGCGAGATCGAGTTTCCCGAGTTCAAGGCCCTCC
TGTCCTGATGATGATATTGTTTCTTCTTGTTGTCGGAACACGTGTTGCGC
TTCCTGCTCGACACGCACCGGGGGTGCCTTACCTCACACTCCACCAAGCA
AACAGCAGCTGTGGCGTTGTTTGGAGCCCGCCGACGTTTTCAACATAGTG
TACATAGATAGACAGTGTCGAGAGTGACCGATGATTCGGATGAATGTGAT
TTCTACCTACATAAGGCAGATCGTTTAAAAACTAGAGAAATCCCCGTCGT
TAGGCCTACATAGTAGATGGTAGATAGCTCACAAGAGGCTTATAGACATG
TTTCGATTCTTGTTTCGGTGGGGCGTGAATAAGGTATGGCCCTCTCCGAC
GGATAGATATTCCGGAGAGACTCTCCTCGCGTACCGTACTCTAGTAGGTT
TAGCGTCGACCCACTAAATTATTGTACCATATATGCCAAATTGTTGAAGA
TGTTGGAATGGACGTTCGTTGTCTTCAAACAAGGGTGCGTGTGCGTGGAC
GTACTTCTGACCCGATCAGTCTTGCCCGGCTTCGGTTGGTGTTTTGGTTG
TCGCCGTTACCGTTGCCAGTAAGGTTCCATATTTACACCCGACGACCTTC
TTAATTAGCGCAAGAAGGGCTACAGACATGATAGTACTTCTTGATTAGTG
CTCACTTGGCATGCTGGTGTTCTAGCCAGTATTAAAGTCACTCGGTCCAA
TA
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Coding sequence (CDS) from alignment at Scaffold_508:434070..437821-

>EsuBft87_2a-0001 ID=EsuBft87_2a-0001|Name=EsuBft87_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=447bp|location=Sequence derived from alignment at Scaffold_508:434070..437821- (Ectocarpus subulatus male Bft15b)
ATGGTCCTCACGCAGGAGGAGATCGACGGTTGCCGAGATGCTTTCCTCGC
CTTCGATAAGGACCGGAGCGGCAATATTGATGTGTGGGAACTGCGACAGG
TGTTGGAAGCGATGGGGCAAAAACCAACGGAAGAGGAGCTCTTTCAGATG
ATAAGCGAGGTAGACGACAACATGTCTGGCTCCATCGACTTTCCGGAGTT
TCTCAAGGTGATCGAGAACCAGAAGAGTCGGGCCCAAAACTTCGACGACG
AGACGGACATGATCGACGCCTTCGTCGCTTGTGGAGGGAGGATGGACAAA
ACGGGTCACGTCAAAAGGGGAGCCTTGGTGAAAATCATCAAGGTTGACTT
CGGCCTGACGATAAACATTGAGGACCTCATCAACAAGATCGACGCAGACG
GGTCGGGCGAGATCGAGTTTCCCGAGTTCAAGGCCCTCCTGTCCTGA
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