EsuBft87_23a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft87_23a-0001
Unique Name	EsuBft87_23a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_508	contig	Scaffold_508:183292..186303 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft87_23
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	283
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft87_23a	EsuBft87_23a	Ectocarpus subulatus male Bft15b	gene	Scaffold_508 183292..186303 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft87_23a-0001	EsuBft87_23	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_508 185128..186135 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft87_23a-0001-exon	EsuBft87_23a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_508 183292..184843 -
EsuBft87_23a-0001-exon	agat-exon-58244	Ectocarpus subulatus male Bft15b	exon	Scaffold_508 185022..186303 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft87_23a-0001-exon	agat-three_prime_utr-22608	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_508 183292..184843 -
EsuBft87_23a-0001-exon	agat-three_prime_utr-22609	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_508 185022..185127 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft87_23a-0001-cds	EsuBft87_23a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_508 185128..186135 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft87_23a-0001-exon	agat-five_prime_utr-14635	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_508 186136..186303 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_508:183292..186303-
coding sequence from alignment at Scaffold_508:183292..186303-

spliced messenger RNA

>EsuBft87_23a-0001 ID=EsuBft87_23a-0001|Name=EsuBft87_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2834bp|location=Sequence derived from alignment at Scaffold_508:183292..186303- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTGCAAGCATCTGCGAACTCCAGGACGGAAGCGAGTCCGCGTGGCCGCT
ATTGACCTTCAGGGGCTCGCTTCCCACGGACAACCACAAGGTCCGTCTGT
TCGTCCTAACGTTCCTGGAGTAGGGCTGTGACTACCTCCCGGCAATTTCC
GGGCTGCCGTTCGACAAGATGTGGGTTCTGGTCCTCAAGAGCGTGCGGAC
GGAGGGTTCGTTGGACAAGCCGCTGTTTTTCGAAGAGCAGGATGGCACGT
GGGCCGTGCATGTCGACGAATGCGCGAAGATTTTGGCGACCATGTTCTTC
TACAAGGATGAAGCGGCGTTTGGCACTGCTCATTTGATTCCAGCCCAGCT
GGTCGAAGGCGTTGACGGCGACGTCGAGGGCTACGTGGACGTGATCCGCT
ACGCCATCCTCCAACTCCCCAAGAAGACGAAGACAGCCACCTGTCCATCT
TTTTTTTCCTTGCGCAAGCAAGCAGAACGAGGTAATGCCATCTTCCGGTA
CTGGCAGAATGGCCTGAGGGAGACCATACCGGCGACAGAGTTTGCCGGCA
AAGGATGGACCGTCGACCCACGAGGAAAGGGGAGCGTCGGCGACGAACTC
ACAAAGGAGAACTGCGTGCTTGACCTGTCCGAGTATGCTTATATCGCCCC
TGACCGAAAGACAGTCACGCTTGCGTGTGGTTGCAATCCGGACACGGCCC
TGTGTAACAGGTGCAGGTGCAAGAACAAGAAGTGCTCGCTTGCTTGCGGC
TGCAGTAATCGTTGCACCCTACGGCGGGCGGCGCCGGCACCCGTGCGCGC
AGGGGGGAGGTCTGCGTCACCGCCTACGGTGGGTGCTTCTCAAACTAGGC
GGGTAGAGGGTACCTCCCGACCCCAACCACCCATCGAGAGTCGACCACGG
CCATCCTACAGTGCTGCCAATGCCATGGCACTCTTTGCCGCCTCTATGAG
GCAGCAGGAATCGCATGGAGCGGAACAGAACGACGTGGAGGCGGGGACCC
CCGAGTCGCCTGCGAGCAAGGACGTTTCCGCCGGCGAGGCTGCGGAATCT
AAGAGGGCAGAGTTAGAGGACCCCGAGTCGGACGAGAACGGCGACGGTTC
GGTCGGTGCACTCGACGATTTGGTAAGTTGGATTCGAGCGAACCTGGATC
CAGCGATGGGGAACCTGACGGGGTGAGCGAGAAGAGCGTCGATTCCAACT
GGAGTGGCGGAGACACAGATGATGGTGTTGCGGATCTCGTAACCGACGCC
TGGAACTGAGATCTGGCTACTTCTTCAGGCAGGTCCGTCCGTGCTTGACT
CCCGTTGGATACATCCATCCACGAAATACGACGACCCGGGGTACGAGATA
TCAGACGGACGAACTTCAGCCTACTACTGAAAAGCCGGCTAGGGCGCGCA
TTTCCGCCCTCGGCGAATTTTCGTTCCTACTAGTTGCGCACGTAGTTGCG
CAGGGAGGTGGACCGGGGGGGGGGATTATTCTTGGCCCAAACCGGGTATC
CGTTGTTTATTGGTGTGGTATTTTGTTCTCCGCGTGTTTCCGGCAGACTG
CCGGAAACCTATTGTTGGGGTGCTGTGTGCGTTGGCCCGGTATTCTGTGC
GGTGTTCGTGTGTAAGTACTTCCGGCGTTTTCGCCACACCCAATGCTCAG
GGCGTCCTCATGTACATCGAGACAAGTATTTCAATGTGTACATATATATA
TGCCGGCCGTGCCTACATGCGACACCCCAAAGCACGACGTTATCAGTGGC
CAAACTCATTGTTACTGTAGGTGCCGTGCTACTGTCGCTATTCGACCATT
CTTGCATTTTTTTCTTCGGGAATCAGGAGAGTTGTGCACTGCTAGGTGAG
GGTCCCGACTCCAACAGGCACAAGCGTGTGCGGTGCAACAACAGAGGGGC
ACCTCCAACAGCAATTTCAGTCCAAACCTAGCTAACGCCATTCAAGAGTA
CTCCACCTATAGTTGGTATTGCAGCACAATTCTAAGTGCTATACAACCAC
AAGATCAGCAGCTAGCATAATCGATGCTCGGTGTTGCCGGCAACGTGTCA
GGGCAAAAGCACGGTGCCTGTATGCGAACGCCAGTTTTCAACTTCATTCG
TACCTACCTCTCGATCCTCTGCACCAATCAAGTTGAATTCTTATGCAATC
TACTGTGTGGCGCTCAGTCCGTCTTCATCAAATTTTTGTGGCGATCGATG
CAGTGGTGGGCGCGTTCTCATGCTTGGTGTCTTTGGCGGGTGCACAGCAG
CGTGGTTGCGCCGCGTAGATACCATCGGCACGTTTTTTTCGGGCACGGGC
TGTGGGTTGCGCCGACAAGTTTGAAGCCTACAGTGGACGGAATTCGACAA
ATCTTGGTTCCCTAGATAGCTATTGAAATAGTCTACTTCTATAAACCTTT
AGCCTTGGGTGGATGTACGCCGGTCGCGCTGCTCTTCTGTGTAAGCCGAT
ATTTTTTGTCCCGCCGCTTACTTTTTTTTTTTTCTGTCGTGCAGCACTGG
CTGGTGAACAATTCAAACTTTCGGTCGCGGGTAACTCGAACAAAACTGTC
AAATATTTCGTCGAGAAAAATTAATCGAACGCGCAGGGATCACGAACTTC
CAACCTGAGTGGCTTGTGTGTTTGCGGTGATTCAATTAAAGGATTGGAAA
TGAATTCCCGACGCCCACGTGCGGGGGGCTTTCGTATCCGACATCTACGT
TCGAAAATACCCTCGTCCGACCACCTAGAGATGTACACGTCTCAGGACCG
TAAATTGCTTGTGCCTCCTTTCTCCGTCAAACGCTTCGGATTGGTTGGAT
GCTTTGACGTAGTCTCTCACCGTCAGGCCTTCGG

protein sequence of EsuBft87_23a-0001

>EsuBft87_23 ID=EsuBft87_23|Name=EsuBft87_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=335bp
MWVLVLKSVRTEGSLDKPLFFEEQDGTWAVHVDECAKILATMFFYKDEAA
FGTAHLIPAQLVEGVDGDVEGYVDVIRYAILQLPKKTKTATCPSFFSLRK
QAERGNAIFRYWQNGLRETIPATEFAGKGWTVDPRGKGSVGDELTKENCV
LDLSEYAYIAPDRKTVTLACGCNPDTALCNRCRCKNKKCSLACGCSNRCT
LRRAAPAPVRAGGRSASPPTVGASQTRRVEGTSRPQPPIESRPRPSYSAA
NAMALFAASMRQQESHGAEQNDVEAGTPESPASKDVSAGEAAESKRAELE
DPESDENGDGSVGALDDLVSWIRANLDPAMGNLTG

mRNA from alignment at Scaffold_508:183292..186303-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft87_23a-0001 ID=EsuBft87_23a-0001|Name=EsuBft87_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3012bp|location=Sequence derived from alignment at Scaffold_508:183292..186303- (Ectocarpus subulatus male Bft15b)
TTTGCAAGCATCTGCGAACTCCAGGACGGAAGCGAGTCCGCGTGGCCGCT
ATTGACCTTCAGGGGCTCGCTTCCCACGGACAACCACAAGGTCCGTCTGT
TCGTCCTAACGTTCCTGGAGTAGGGCTGTGACTACCTCCCGGCAATTTCC
GGGCTGCCGTTCGACAAGATGTGGGTTCTGGTCCTCAAGAGCGTGCGGAC
GGAGGGTTCGTTGGACAAGCCGCTGTTTTTCGAAGAGCAGGATGGCACGT
GGGCCGTGCATGTCGACGAATGCGCGAAGATTTTGGCGACCATGTTCTTC
TACAAGGATGAAGCGGCGTTTGGCACTGCTCATTTGATTCCAGCCCAGCT
GGTCGAAGGCGTTGACGGCGACGTCGAGGGCTACGTGGACGTGATCCGCT
ACGCCATCCTCCAACTCCCCAAGAAGACGAAGACAGCCACCTGTCCATCT
TTTTTTTCCTTGCGCAAGCAAGCAGAACGAGGTAATGCCATCTTCCGGTA
CTGGCAGAATGGCCTGAGGGAGACCATACCGGCGACAGAGTTTGCCGGCA
AAGGATGGACCGTCGACCCACGAGGAAAGGGGAGCGTCGGCGACGAACTC
ACAAAGGAGAACTGCGTGCTTGACCTGTCCGAGTATGCTTATATCGCCCC
TGACCGAAAGACAGTCACGCTTGCGTGTGGTTGCAATCCGGACACGGCCC
TGTGTAACAGGTGCAGGTGCAAGAACAAGAAGTGCTCGCTTGCTTGCGGC
TGCAGTAATCGTTGCACCCTACGGCGGGCGGCGCCGGCACCCGTGCGCGC
AGGGGGGAGGTCTGCGTCACCGCCTACGGTGGGTGCTTCTCAAACTAGGC
GGGTAGAGGGTACCTCCCGACCCCAACCACCCATCGAGAGTCGACCACGG
CCATCCTACAGTGCTGCCAATGCCATGGCACTCTTTGCCGCCTCTATGAG
GCAGCAGGAATCGCATGGAGCGGAACAGAACGACGTGGAGGCGGGGACCC
CCGAGTCGCCTGCGAGCAAGGACGTTTCCGCCGGCGAGGCTGCGGAATCT
AAGAGGGCAGAGTTAGAGGACCCCGAGTCGGACGAGAACGGCGACGGTTC
GGTCGGTGCACTCGACGATTTGGTAAGTTGGATTCGAGCGAACCTGGATC
CAGCGATGGGGAACCTGACGGGGTGAGCGAGAAGAGCGTCGATTCCAACT
GGAGTGGCGGAGACACAGATGATGGTGTTGCGGATCTCGTAACCGACGCC
TGGAACTGAGATCTGGCTACTTCTTCAGGCAGGTACATGTACACACCGGT
CACCCCGGTGGTCTAGTGGGTAGCCTCACAGCCTGCCAAGGGCCAGGTCA
TGGGTTCGAGTCCCGGCAGAGTGAGTTTNTCGACAGATCGTGTGGTCTGA
TTTATGCTTACTCCATGTTTCAACGACTTACTTCGCGCGTCTTTGTTGAT
GGTTGAACAGGTCCGTCCGTGCTTGACTCCCGTTGGATACATCCATCCAC
GAAATACGACGACCCGGGGTACGAGATATCAGACGGACGAACTTCAGCCT
ACTACTGAAAAGCCGGCTAGGGCGCGCATTTCCGCCCTCGGCGAATTTTC
GTTCCTACTAGTTGCGCACGTAGTTGCGCAGGGAGGTGGACCGGGGGGGG
GGATTATTCTTGGCCCAAACCGGGTATCCGTTGTTTATTGGTGTGGTATT
TTGTTCTCCGCGTGTTTCCGGCAGACTGCCGGAAACCTATTGTTGGGGTG
CTGTGTGCGTTGGCCCGGTATTCTGTGCGGTGTTCGTGTGTAAGTACTTC
CGGCGTTTTCGCCACACCCAATGCTCAGGGCGTCCTCATGTACATCGAGA
CAAGTATTTCAATGTGTACATATATATATGCCGGCCGTGCCTACATGCGA
CACCCCAAAGCACGACGTTATCAGTGGCCAAACTCATTGTTACTGTAGGT
GCCGTGCTACTGTCGCTATTCGACCATTCTTGCATTTTTTTCTTCGGGAA
TCAGGAGAGTTGTGCACTGCTAGGTGAGGGTCCCGACTCCAACAGGCACA
AGCGTGTGCGGTGCAACAACAGAGGGGCACCTCCAACAGCAATTTCAGTC
CAAACCTAGCTAACGCCATTCAAGAGTACTCCACCTATAGTTGGTATTGC
AGCACAATTCTAAGTGCTATACAACCACAAGATCAGCAGCTAGCATAATC
GATGCTCGGTGTTGCCGGCAACGTGTCAGGGCAAAAGCACGGTGCCTGTA
TGCGAACGCCAGTTTTCAACTTCATTCGTACCTACCTCTCGATCCTCTGC
ACCAATCAAGTTGAATTCTTATGCAATCTACTGTGTGGCGCTCAGTCCGT
CTTCATCAAATTTTTGTGGCGATCGATGCAGTGGTGGGCGCGTTCTCATG
CTTGGTGTCTTTGGCGGGTGCACAGCAGCGTGGTTGCGCCGCGTAGATAC
CATCGGCACGTTTTTTTCGGGCACGGGCTGTGGGTTGCGCCGACAAGTTT
GAAGCCTACAGTGGACGGAATTCGACAAATCTTGGTTCCCTAGATAGCTA
TTGAAATAGTCTACTTCTATAAACCTTTAGCCTTGGGTGGATGTACGCCG
GTCGCGCTGCTCTTCTGTGTAAGCCGATATTTTTTGTCCCGCCGCTTACT
TTTTTTTTTTTCTGTCGTGCAGCACTGGCTGGTGAACAATTCAAACTTTC
GGTCGCGGGTAACTCGAACAAAACTGTCAAATATTTCGTCGAGAAAAATT
AATCGAACGCGCAGGGATCACGAACTTCCAACCTGAGTGGCTTGTGTGTT
TGCGGTGATTCAATTAAAGGATTGGAAATGAATTCCCGACGCCCACGTGC
GGGGGGCTTTCGTATCCGACATCTACGTTCGAAAATACCCTCGTCCGACC
ACCTAGAGATGTACACGTCTCAGGACCGTAAATTGCTTGTGCCTCCTTTC
TCCGTCAAACGCTTCGGATTGGTTGGATGCTTTGACGTAGTCTCTCACCG
TCAGGCCTTCGG

Coding sequence (CDS) from alignment at Scaffold_508:183292..186303-

>EsuBft87_23a-0001 ID=EsuBft87_23a-0001|Name=EsuBft87_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1008bp|location=Sequence derived from alignment at Scaffold_508:183292..186303- (Ectocarpus subulatus male Bft15b)
ATGTGGGTTCTGGTCCTCAAGAGCGTGCGGACGGAGGGTTCGTTGGACAA
GCCGCTGTTTTTCGAAGAGCAGGATGGCACGTGGGCCGTGCATGTCGACG
AATGCGCGAAGATTTTGGCGACCATGTTCTTCTACAAGGATGAAGCGGCG
TTTGGCACTGCTCATTTGATTCCAGCCCAGCTGGTCGAAGGCGTTGACGG
CGACGTCGAGGGCTACGTGGACGTGATCCGCTACGCCATCCTCCAACTCC
CCAAGAAGACGAAGACAGCCACCTGTCCATCTTTTTTTTCCTTGCGCAAG
CAAGCAGAACGAGGTAATGCCATCTTCCGGTACTGGCAGAATGGCCTGAG
GGAGACCATACCGGCGACAGAGTTTGCCGGCAAAGGATGGACCGTCGACC
CACGAGGAAAGGGGAGCGTCGGCGACGAACTCACAAAGGAGAACTGCGTG
CTTGACCTGTCCGAGTATGCTTATATCGCCCCTGACCGAAAGACAGTCAC
GCTTGCGTGTGGTTGCAATCCGGACACGGCCCTGTGTAACAGGTGCAGGT
GCAAGAACAAGAAGTGCTCGCTTGCTTGCGGCTGCAGTAATCGTTGCACC
CTACGGCGGGCGGCGCCGGCACCCGTGCGCGCAGGGGGGAGGTCTGCGTC
ACCGCCTACGGTGGGTGCTTCTCAAACTAGGCGGGTAGAGGGTACCTCCC
GACCCCAACCACCCATCGAGAGTCGACCACGGCCATCCTACAGTGCTGCC
AATGCCATGGCACTCTTTGCCGCCTCTATGAGGCAGCAGGAATCGCATGG
AGCGGAACAGAACGACGTGGAGGCGGGGACCCCCGAGTCGCCTGCGAGCA
AGGACGTTTCCGCCGGCGAGGCTGCGGAATCTAAGAGGGCAGAGTTAGAG
GACCCCGAGTCGGACGAGAACGGCGACGGTTCGGTCGGTGCACTCGACGA
TTTGGTAAGTTGGATTCGAGCGAACCTGGATCCAGCGATGGGGAACCTGA
CGGGGTGA