EsuBft87_22a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft87_22a-0001
Unique NameEsuBft87_22a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_508contigScaffold_508:188553..190063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft87_22
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length49
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft87_22aEsuBft87_22aEctocarpus subulatus male Bft15bgeneScaffold_508 188553..190063 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft87_22a-0001EsuBft87_22Ectocarpus subulatus male Bft15bpolypeptideScaffold_508 189694..190041 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft87_22a-0001-exonagat-exon-58243Ectocarpus subulatus male Bft15bexonScaffold_508 188553..188873 -
EsuBft87_22a-0001-exonagat-exon-58242Ectocarpus subulatus male Bft15bexonScaffold_508 189650..189719 -
EsuBft87_22a-0001-exonEsuBft87_22a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_508 189957..190063 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft87_22a-0001-exonagat-three_prime_utr-22606Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_508 188553..188873 -
EsuBft87_22a-0001-exonagat-three_prime_utr-22607Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_508 189650..189693 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft87_22a-0001-cdsEsuBft87_22a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_508 189694..189719 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft87_22a-0001-exonagat-five_prime_utr-14634Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_508 190042..190063 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft87_22a-0001 ID=EsuBft87_22a-0001|Name=EsuBft87_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=498bp|location=Sequence derived from alignment at Scaffold_508:188553..190063- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGACAGACGACCACAATCCGAGATGCTGTTCACGAAGCGGAACCTGCGGT
CGGTAGTCTTCCAAAGACGCATGCAGCTGCACGACAGCGTAGATGTAGAG
TTGAGAAACCTCCACACCCAGCACTGGCTCTAGAGGGCGAACCAGAGGCT
AAACTGCCCAGACAACACGAGAGCTATGTATTTAATGCATGAGATGACGG
CCGGCACAGGTCGTGCTGACAGATGACCCCTCGGAGAGGTAGGCGGGGCA
ACCGGGCTGGTGGGGCTAACAACCCCACAGGTCAACCGGCTACGCCACCG
GCTACGCCTCGGAACCAGCCTGGGAGCTCTGTTACACCCGGAAGCGGGGG
TATGCAGCCAACATGGGACCTTCGACAGCATACGGAAGGCACGCTAACCC
CGCGTACTCCAGTGGTCGACAACTCAGGGGGATACGTAACAAGTGAACGG
CCACGGATCGGGAGCAGGAGAGAGGGCAACCTAACCACTGAGGTGCGC
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protein sequence of EsuBft87_22a-0001

>EsuBft87_22 ID=EsuBft87_22|Name=EsuBft87_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=36bp
MLFTKRNLRSVVFQRRMQLHDSVDVELRNLHTQHWL
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mRNA from alignment at Scaffold_508:188553..190063-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft87_22a-0001 ID=EsuBft87_22a-0001|Name=EsuBft87_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1511bp|location=Sequence derived from alignment at Scaffold_508:188553..190063- (Ectocarpus subulatus male Bft15b)
GGACAGACGACCACAATCCGAGATGCTGTTCACGAAGCGGAACCTGCGGT
CGGTAGTCTTCCAAAGACGCATGCAGCTGCACGACAGCGTAGATGTAGAG
TTGAGAAGTACGAGCCGTTCTGCGGTTTCAGTGCAGAGTTGCAAGAGCAT
ATGTCCATCTAACAAAGAAGGTTCTCTATGCGTACAAGACCTCCCTTTTC
CAGTTCAAGAGATCCCTCGGCGTGCTGCAAACCCAGTGATGCACGACTAA
AAACAGAAACAAGTTAGTGTGATAAAAAAAGCTTCCAACGGGAAAGCAGC
CCCCTGTGGAAACCCCTCTGATCAGGCGGCTCGCGGCGCAACAGACCTCC
ACACCCAGCACTGGCTCTAGAGGGCGAACCAGAGGCTAAACTGCCCAGAC
AACACGAGAGCTATGTTAACACGATGCAAGGGCACAGCAGGGTATGTTTT
ATACGCCCAAATACACATGGTAAGTGAGAAATTTAGACTTCAGCTAGAGC
GTACCACACTGCGGCAGCTCCAAAATCCGCGAGGAAGCTTCACACGCGAG
CCGACCTCTGCGCAAGGTTGGCGTCTTGCAGCCTAATTGTGCTGCTGACA
TATATCTGGGTCTCATTGCCACCTAATGCAGAAGGTTTGAGGCGATTTAG
TGCGGTAGAAAATAAGCATGGTGTGGTCAAAACTCAAATTTCAGGAGAGC
CCACGCCGGGGGGTTCGAACTCACGCTCTTGCATGTTGCGCATGTACATC
CACCGGATACACGACCCCCATCCAAAGATACTATGGAAATGCCCGATACA
GTCCAGCCGCCACAACAATTTATAGGGAATCTGGACTTAGAGAGGGCAAG
TACGTCTGTCTTGAAGTTAAAATTAGACTCGGTGCTTTGCCATGGTACGA
GTCAAACATGACCCGGGGCGCTCAGCTACGTACACTCCAGACCGTGCATA
TACAGCAGTAGATTGAAACGCCGCAGAAATGTCGAGTCGGGCATATATAG
TACGTAGATTGACAGCTTTCAGTCCGTCATGCTCTAAGGTACATAAGCAT
GCCCATACAGAGGATCATATGTTATGCATGGCTGTCAAGAGACAACGAAG
CGCGCCCACAGACATAGCATAGGTGTGCGCCTGCGTAGGCTGCACGTGTC
AAGTGACATTTTGTCATTTTTGGTCGTATACCATGGCCAGGTATTTAATG
CATGAGATGACGGCCGGCACAGGTCGTGCTGACAGATGACCCCTCGGAGA
GGTAGGCGGGGCAACCGGGCTGGTGGGGCTAACAACCCCACAGGTCAACC
GGCTACGCCACCGGCTACGCCTCGGAACCAGCCTGGGAGCTCTGTTACAC
CCGGAAGCGGGGGTATGCAGCCAACATGGGACCTTCGACAGCATACGGAA
GGCACGCTAACCCCGCGTACTCCAGTGGTCGACAACTCAGGGGGATACGT
AACAAGTGAACGGCCACGGATCGGGAGCAGGAGAGAGGGCAACCTAACCA
CTGAGGTGCGC
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Coding sequence (CDS) from alignment at Scaffold_508:188553..190063-

>EsuBft87_22a-0001 ID=EsuBft87_22a-0001|Name=EsuBft87_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=111bp|location=Sequence derived from alignment at Scaffold_508:188553..190063- (Ectocarpus subulatus male Bft15b)
ATGCTGTTCACGAAGCGGAACCTGCGGTCGGTAGTCTTCCAAAGACGCAT
GCAGCTGCACGACAGCGTAGATGTAGAGTTGAGAAACCTCCACACCCAGC
ACTGGCTCTAG
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