EsuBft878_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft878_9a-0001
Unique NameEsuBft878_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_529contigScaffold_529:133509..135092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft878_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length101
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft878_9aEsuBft878_9aEctocarpus subulatus male Bft15bgeneScaffold_529 133509..135092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft878_9a-0001EsuBft878_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_529 134915..135092 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft878_9a-0001-exonagat-exon-107018Ectocarpus subulatus male Bft15bexonScaffold_529 133509..133546 -
EsuBft878_9a-0001-exonEsuBft878_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_529 134066..134952 -
EsuBft878_9a-0001-exonagat-exon-107017Ectocarpus subulatus male Bft15bexonScaffold_529 135008..135092 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft878_9a-0001-exonagat-three_prime_utr-22581Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_529 133509..133546 -
EsuBft878_9a-0001-exonagat-three_prime_utr-22582Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_529 134066..134914 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft878_9a-0001-cdsEsuBft878_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_529 134915..134952 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft878_9a-0001 ID=EsuBft878_9a-0001|Name=EsuBft878_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1010bp|location=Sequence derived from alignment at Scaffold_529:133509..135092- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAAAACCGCGCCTCGCCGCACCGTGACCATGTCAAGAAAAAAAAC
TTACCGCGGTGTGGTTCCACACGGCGATCATCCCGGTTTCAAATCTGTCT
CCTTAACCACTCGGACACACTGACACTCACGCAGTGTCGACGGACCGCTA
TAAAAGGGAGCATACGTTTCGCATGCCTTCGTTGTTACCACCATTGACCG
CGCGTCATCCTCGAGAGGACGGTGTGAGGCGGGCGGGAAAACATGTGGAT
TCTACGCACCCACCCGGGCGCCATGCTCCTCCCCGGTTTTTGTGCTCCGT
CTCGGCTTTGTAGGGATGCGAGGTCGATGGTCTAACAACTACGGCATGCA
CCACTACGAGTACACCCCCCCCGGTGTTTGCCATCGGGGTTGGGTTTTCG
TCGCTTGGCAACGACGTTGTAAAACAAGCCCCCCCCCCCCGGTGTTTGCC
ATCGGGGTTGGGTTTTCGTCGCTTGGCAACGACTTTGTAAAACAAGCCCC
CCCCTCGGTGCTTGCCCCCCCTACACATTTCTAGATTTAAGTGGGTTGGC
GCTGTTTGTAAAGCGCTGTAAAACACGCCACCCCAAATATAGCCCCCATA
GTATGCGCTACCAAAGACGCGTGACGCATGGATGCGTGGAGTGAGGATTG
CTTACGGAAACCTCACAGGTTGAGTGATGTAGGAGATTGCCGGACACATA
GATGTGTTGAGTCATTAAAGCTGTATACTGAAACCTCAAGGGTTGAGTGA
GGTTTAAGATTGCCACACACATGGACGGGTTGAGTGGGGATAGCTGCATA
CTGAAACCCCACGGGTTGAGTGATGTTGGAGTGCCGGACACATAGACGCG
TTGAATGAGGATAGACACATATTGAACCTCACAGGTTATTTGTATTGGAG
ATTGCGAGACACCTAGACGTGTTGAGTGAGGATAGCTGCATACTGAAACC
TCACAGATGCATTGGTTTTTGAACACATTGACGCGCTGGGTGGAGATAGC
TACATACTGA
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protein sequence of EsuBft878_9a-0001

>EsuBft878_9 ID=EsuBft878_9|Name=EsuBft878_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=40bp
MTKTAPRRTVTMSRKKTYRGVVPHGDHPGFKSVSLTTRTH
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mRNA from alignment at Scaffold_529:133509..135092-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft878_9a-0001 ID=EsuBft878_9a-0001|Name=EsuBft878_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1584bp|location=Sequence derived from alignment at Scaffold_529:133509..135092- (Ectocarpus subulatus male Bft15b)
ATGACAAAAACCGCGCCTCGCCGCACCGTGACCATGTCAAGAAAAAAAAC
TTACCGCGGTGTGGTTCCACACGGCGATCATCCCGGTAAAAAAGCTAACG
TCAGCGACGGGATTTGAACCCGCGCGTGAGATCACAACAGGTTTCAAATC
TGTCTCCTTAACCACTCGGACACACTGACACTCACGCAGTGTCGACGGAC
CGCTATAAAAGGGAGCATACGTTTCGCATGCCTTCGTTGTTACCACCATT
GACCGCGCGTCATCCTCGAGAGGACGGTGTGAGGCGGGCGGGAAAACATG
TGGATTCTACGCACCCACCCGGGCGCCATGCTCCTCCCCGGTTTTTGTGC
TCCGTCTCGGCTTTGTAGGGATGCGAGGTCGATGGTCTAACAACTACGGC
ATGCACCACTACGAGTACACCCCCCCCGGTGTTTGCCATCGGGGTTGGGT
TTTCGTCGCTTGGCAACGACGTTGTAAAACAAGCCCCCCCCCCCCGGTGT
TTGCCATCGGGGTTGGGTTTTCGTCGCTTGGCAACGACTTTGTAAAACAA
GCCCCCCCCTCGGTGCTTGCCCCCCCTACACATTTCTAGATTTAAGTGGG
TTGGCGCTGTTTGTAAAGCGCTGTAAAACACGCCACCCCAAATATAGCCC
CCATAGTATGCGCTACCAAAGACGCGTGACGCATGGATGCGTGGAGTGAG
GATTGCTTACGGAAACCTCACAGGTTGAGTGATGTAGGAGATTGCCGGAC
ACATAGATGTGTTGAGTCATTAAAGCTGTATACTGAAACCTCAAGGGTTG
AGTGAGGTTTAAGATTGCCACACACATGGACGGGTTGAGTGGGGATAGCT
GCATACTGAAACCCCACGGGTTGAGTGATGTTGGAGTGCCGGACACATAG
ACGCGTTGAATGAGGATAGACACATATTGAACCTCACAGGTTATTTGTAT
TGGAGATTGCGAGACACCTAGACGTGTTGAGTGAGGATAGCTGCATACTG
AAACCTCACAGATGCATTGGTTTTTGAGTTTGCCAGACACATAGACGCGT
TGAGTGGGGATAGCTACATACTGAAACCTCACGAGTTGAGTGATGTTGGA
TAGTGCCGGACACATAGACGCTTTGAGTGAGGAAAGACACATACTGAAAC
CTCACAGGTGATTTGTATTGGAGATTGCCGGACACATAGACGTGTTGAGT
GGGATTAGCTACATACTGAAACCTCACAGATGGATTGGTTTTTGAGTTTG
CCAGACACATAGACGCGTTGAGTGGAATTAGCTACATACTGAAACCTCAC
AGATGGATTGGTTTTTGAGTTTGCCAGACACATAGACGCGTTGAGTGGAA
TTAGCTACATACTGAAACCTCACAGATGGATTGGTTTTTGAGTTTGCCAG
ACACATAGACGCGTTGAGTGGAATTAGCTACATACTGAAACCTCACAGAT
GGATTGGTTTTTGAGTTTGCCAGACACATAGACGCGTTGAGTGGAATTAG
CTACATACTGAAACCTCACAGATGGATTGTTTTTTGAGTTTAACAGACAC
ATTGACGCGCTGGGTGGAGATAGCTACATACTGA
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Coding sequence (CDS) from alignment at Scaffold_529:133509..135092-

>EsuBft878_9a-0001 ID=EsuBft878_9a-0001|Name=EsuBft878_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=123bp|location=Sequence derived from alignment at Scaffold_529:133509..135092- (Ectocarpus subulatus male Bft15b)
ATGACAAAAACCGCGCCTCGCCGCACCGTGACCATGTCAAGAAAAAAAAC
TTACCGCGGTGTGGTTCCACACGGCGATCATCCCGGTTTCAAATCTGTCT
CCTTAACCACTCGGACACACTGA
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