EsuBft878_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft878_4a-0001
Unique NameEsuBft878_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_529contigScaffold_529:104114..106342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft878_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length125
Hectar predicted targeting categorymitochondrion
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft878_4aEsuBft878_4aEctocarpus subulatus male Bft15bgeneScaffold_529 104114..106342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft878_4a-0001EsuBft878_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_529 104378..105088 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft878_4a-0001-exonEsuBft878_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_529 104114..105201 -
EsuBft878_4a-0001-exonagat-exon-107003Ectocarpus subulatus male Bft15bexonScaffold_529 106173..106342 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft878_4a-0001-exonagat-three_prime_utr-22576Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_529 104114..104377 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft878_4a-0001-cdsEsuBft878_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_529 104378..105088 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft878_4a-0001-exonagat-five_prime_utr-14611Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_529 105089..105201 -
EsuBft878_4a-0001-exonagat-five_prime_utr-14612Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_529 106173..106342 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft878_4a-0001 ID=EsuBft878_4a-0001|Name=EsuBft878_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1258bp|location=Sequence derived from alignment at Scaffold_529:104114..106342- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCCTCTAAATTTGCGCCGTTGGGGGGCACGCAGAGGGGGTGAACCTCCC
CTCTACGAACCCCCGAAACCACTTGGCTTTTGTGTATCCACAAAGCTTCG
GCACACGGAAGCCGATAGCTCGGCCATCAGGAGGTGATCCCAAACAGGAC
TTCGAGGTCGTGTGGATCAGGCAGGAAAAGCATGCCTCGCAAGAACAGCA
ACAGGGTGGCGAACGTAAAGAAGAGGGCTCGTCGTCCCAAGGGGCGGCCG
CCGGAGCGGGCGTGGGCGCAGACATTAGCGCAGATGAAAGCAGCAGCGGC
AGCGGCGGCGCGGAGAAAGTCCCTTCGCACTCGGGGAGGCGAAACGTTTG
TGCGCCTTCGAAACGGCGGCTTCAGTAACAGCTGCGGGCCCATCTGCTTG
TTGCAACATGCGATGAGTGATAGCCTCCCGATTGCTACCATCGAGAGAGC
CACCAATGGCGAGATCGCGTCTGAGGTACGAGGCGCCCTGCGGTACATTC
GCGACATCACCGTCGACACCTCGCACGGCCACACCCTGAGTGTGCTCGAC
CCCGACGAGGAGCGTGAGGTTCACGGGTTCGAAGATCTGGTGGATTCCGC
AGAGCGCGACATCCTTTCGAAGCCGATGTGGGACAAGATCATGCGCTGTC
CGTACGGCTACTTCGATGGCAGGGCGATGATGATCGGGGCGGACGCTTTG
GGTCTAGATGGTCTTCTGATAGTTCGGGTGGACAGCGCTGGATTTTTGGT
GGCGATGGATGGGATGACGACCCCAGTTGCCGAAGCGAAGCATCTCAGCC
ACTGCCCTCTGGTTTTGGTGGGCTCAAGAAAAGTCAGCCTCAGCTTGAAT
GCCACCCCCACACGCCCAATCCTCAAAGCACGTTTCAAAATAGCGAAGGC
GTGCTTGTATGGCGGGCTCGTCACGACCCACTCCGGGCGCCGCCCTTCCT
CGCAGAAGGTATCCACAAATGTGTCCGTCGTGGCATCCATATGACTGTCT
GCGACCAACCTGAGGAGGGTGACAAGGACCAGGAAAAGGCTTGATTTTAA
TAATGGAGAAACGGCACATTGAAGATTTAAATGACAGGATCGTCTGCCAA
TAAGGGTGGCTGATGCCCATGCTGTAGACTTTGTGTGTCCTATATATATA
TATATGCTAGTTTTTACGCCAAAAGATAACAAGGCTTCAACAAGACTTCG
TAGTTCCAACAGGCACTTGGAATACAGTGATGGGCACCATGAAGACAAAA
AAAAATAA
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protein sequence of EsuBft878_4a-0001

>EsuBft878_4 ID=EsuBft878_4|Name=EsuBft878_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=236bp
MKAAAAAAARRKSLRTRGGETFVRLRNGGFSNSCGPICLLQHAMSDSLPI
ATIERATNGEIASEVRGALRYIRDITVDTSHGHTLSVLDPDEEREVHGFE
DLVDSAERDILSKPMWDKIMRCPYGYFDGRAMMIGADALGLDGLLIVRVD
SAGFLVAMDGMTTPVAEAKHLSHCPLVLVGSRKVSLSLNATPTRPILKAR
FKIAKACLYGGLVTTHSGRRPSSQKVSTNVSVVASI
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mRNA from alignment at Scaffold_529:104114..106342-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft878_4a-0001 ID=EsuBft878_4a-0001|Name=EsuBft878_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2229bp|location=Sequence derived from alignment at Scaffold_529:104114..106342- (Ectocarpus subulatus male Bft15b)
TTCCTCTAAATTTGCGCCGTTGGGGGGCACGCAGAGGGGGTGAACCTCCC
CTCTACGAACCCCCGAAACCACTTGGCTTTTGTGTATCCACAAAGCTTCG
GCACACGGAAGCCGATAGCTCGGCCATCAGGAGGTGATCCCAAACAGGAC
TTCGAGGTCGTGTGGATCAGGTATGGAACTAAAGATATGGCCCCTCTCTG
GAACGTGATGCTACTTGTAGCACTAGATCTTGGCATCGCACAGAAAGGTC
CAATATGCAGCACAGGGTACGCAGCGGACAAATAGCGTTTGAATTCGCAT
AGATGCACATGGCGCTACCTCGTGGCCCCGCTCTAGCCCAAAGTCGCCTC
CACCCCTGTGCGAGTGCCGGGGATCATTGGACTAGCCCACGATAAGAACG
TGTGTTAGCGTTAGCACAATACGCACGGTCCACGGCAGCAAAGGCTCCGT
GCTGGGTGTATTGTGTGCAGGAAGCGCCTGTGTGGTACGCCAGCACATGC
ATGACCACGAAGCACATGACACGCAGCACAGAGGGGCACACCCGTTGCGA
CCTAAGAACACCATGCACATGTGATGTCCAGTCGATGCGTAGCGTGCTTG
AGGTCGAGGCCGTGGTCAATTGTTTCGCAGGGGTTGATTATTCTCTCCTG
AACAATTATAAACACGAAATAAAATTACTTCGAAGTAGGTGGACTAGATT
ATTATAGTCTTTATTGTACTCTGTATCCTGCGTACTACTTTTTTTGTGTA
CAGCAGTCGTCTGCTGGGAGATCCTTGAGGGGACAGTTCATCAGCGCGTG
TCCACCCACCCGTACGCGTTGCAGAATATATATTTTTTGAGGTTGATGAG
GGATGATTGCATTTGACCACGTGTCTGATTGCCGGGGAGGCAGGTGCTTG
CGATCAATACTACTGCAGCGGCTGCTGGGACGCTACCCCTCCCCCCTTTT
GCCTGAGCTGATTCTCACGTTCCACGTCGCTATTTTGAGGAAGAAGAGTA
CTAGTCCCGACAGGGCTGTATCAGAGGTAGTTGACACATGGATGACAGTC
GTGACAACTGATCGCGTACTCGGTGCGTACCAAGCTCAAACGTGAGTTGC
AATGCCGTCCCGTCCCGCCTGTTCGCCGGATGGGTGTCTAGGCAGGAAAA
GCATGCCTCGCAAGAACAGCAACAGGGTGGCGAACGTAAAGAAGAGGGCT
CGTCGTCCCAAGGGGCGGCCGCCGGAGCGGGCGTGGGCGCAGACATTAGC
GCAGATGAAAGCAGCAGCGGCAGCGGCGGCGCGGAGAAAGTCCCTTCGCA
CTCGGGGAGGCGAAACGTTTGTGCGCCTTCGAAACGGCGGCTTCAGTAAC
AGCTGCGGGCCCATCTGCTTGTTGCAACATGCGATGAGTGATAGCCTCCC
GATTGCTACCATCGAGAGAGCCACCAATGGCGAGATCGCGTCTGAGGTAC
GAGGCGCCCTGCGGTACATTCGCGACATCACCGTCGACACCTCGCACGGC
CACACCCTGAGTGTGCTCGACCCCGACGAGGAGCGTGAGGTTCACGGGTT
CGAAGATCTGGTGGATTCCGCAGAGCGCGACATCCTTTCGAAGCCGATGT
GGGACAAGATCATGCGCTGTCCGTACGGCTACTTCGATGGCAGGGCGATG
ATGATCGGGGCGGACGCTTTGGGTCTAGATGGTCTTCTGATAGTTCGGGT
GGACAGCGCTGGATTTTTGGTGGCGATGGATGGGATGACGACCCCAGTTG
CCGAAGCGAAGCATCTCAGCCACTGCCCTCTGGTTTTGGTGGGCTCAAGA
AAAGTCAGCCTCAGCTTGAATGCCACCCCCACACGCCCAATCCTCAAAGC
ACGTTTCAAAATAGCGAAGGCGTGCTTGTATGGCGGGCTCGTCACGACCC
ACTCCGGGCGCCGCCCTTCCTCGCAGAAGGTATCCACAAATGTGTCCGTC
GTGGCATCCATATGACTGTCTGCGACCAACCTGAGGAGGGTGACAAGGAC
CAGGAAAAGGCTTGATTTTAATAATGGAGAAACGGCACATTGAAGATTTA
AATGACAGGATCGTCTGCCAATAAGGGTGGCTGATGCCCATGCTGTAGAC
TTTGTGTGTCCTATATATATATATATGCTAGTTTTTACGCCAAAAGATAA
CAAGGCTTCAACAAGACTTCGTAGTTCCAACAGGCACTTGGAATACAGTG
ATGGGCACCATGAAGACAAAAAAAAATAA
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Coding sequence (CDS) from alignment at Scaffold_529:104114..106342-

>EsuBft878_4a-0001 ID=EsuBft878_4a-0001|Name=EsuBft878_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=711bp|location=Sequence derived from alignment at Scaffold_529:104114..106342- (Ectocarpus subulatus male Bft15b)
ATGAAAGCAGCAGCGGCAGCGGCGGCGCGGAGAAAGTCCCTTCGCACTCG
GGGAGGCGAAACGTTTGTGCGCCTTCGAAACGGCGGCTTCAGTAACAGCT
GCGGGCCCATCTGCTTGTTGCAACATGCGATGAGTGATAGCCTCCCGATT
GCTACCATCGAGAGAGCCACCAATGGCGAGATCGCGTCTGAGGTACGAGG
CGCCCTGCGGTACATTCGCGACATCACCGTCGACACCTCGCACGGCCACA
CCCTGAGTGTGCTCGACCCCGACGAGGAGCGTGAGGTTCACGGGTTCGAA
GATCTGGTGGATTCCGCAGAGCGCGACATCCTTTCGAAGCCGATGTGGGA
CAAGATCATGCGCTGTCCGTACGGCTACTTCGATGGCAGGGCGATGATGA
TCGGGGCGGACGCTTTGGGTCTAGATGGTCTTCTGATAGTTCGGGTGGAC
AGCGCTGGATTTTTGGTGGCGATGGATGGGATGACGACCCCAGTTGCCGA
AGCGAAGCATCTCAGCCACTGCCCTCTGGTTTTGGTGGGCTCAAGAAAAG
TCAGCCTCAGCTTGAATGCCACCCCCACACGCCCAATCCTCAAAGCACGT
TTCAAAATAGCGAAGGCGTGCTTGTATGGCGGGCTCGTCACGACCCACTC
CGGGCGCCGCCCTTCCTCGCAGAAGGTATCCACAAATGTGTCCGTCGTGG
CATCCATATGA
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