EsuBft878_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft878_2a-0001
Unique NameEsuBft878_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_529contigScaffold_529:92500..93876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft878_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length124
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft878_2aEsuBft878_2aEctocarpus subulatus male Bft15bgeneScaffold_529 92500..93876 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft878_2a-0001EsuBft878_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_529 93508..93657 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft878_2a-0001-exonagat-exon-106996Ectocarpus subulatus male Bft15bexonScaffold_529 92500..92742 -
EsuBft878_2a-0001-exonEsuBft878_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_529 92876..93876 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft878_2a-0001-exonagat-three_prime_utr-22572Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_529 92500..92742 -
EsuBft878_2a-0001-exonagat-three_prime_utr-22573Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_529 92876..93507 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft878_2a-0001-cdsEsuBft878_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_529 93508..93657 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft878_2a-0001-exonagat-five_prime_utr-14609Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_529 93658..93876 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft878_2a-0001 ID=EsuBft878_2a-0001|Name=EsuBft878_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1244bp|location=Sequence derived from alignment at Scaffold_529:92500..93876- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ACGACCTCTCCATCCACCACCTTCCGGAAGACACACGGGTCAACCCTGCA
CTGCTCGTATCCATTCTCGATGAGGGCATCGGCAGCTTCAAACCCCCACT
CACGGCCACCCTGCTTTAGGCCGTACAGGGCACGCTCAACCTTGACCACC
TTGCCGGACATGCTACCACAGCCTTCCGGGAACCTGAGGTATATTTCTTC
TTTTAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGGAAGTCG
ATGCCGGGGATTTGAGAGAAACCCCGCGCAACCATACGGGCCTTGAAGTC
GACTATCAGATCCTTCTCATTCGTCTTCCAAGAGAACACCCACTGTGAAC
CTATGGCCTTTCGCCCCTCGGGCAGCTCCTTGACCTTGGTAAAGGTTCCA
GTCTTGTCGTGGCCATCTATCTCTTTCTTCATGGCCGCCTCCCAGAAAAC
CTTGCACTTGGAACACATCACATCCTTGTACGTCATCGGTACTGCTTCCA
CATTACTCGGCTTCTGCCCGATTGGCGAGGTCATACTTAGCTGTGGGTCT
GGGAGTGGTTGCGAAGTCCCGCTGGCGTCGACCTCAGCCCCGAACGCCTG
CTGTTCCGGGCCCAACACTTCCTGCATCTCCACCTGTACATCTCCTCCAT
ACGGCGTGTCTGCTCCTCGTCCCACTGCTCCTTCACAAGCGAGTCGCAGA
TGTAGTCCTCAGCAATCCCCGTCCCGCCAGTTTCCAGGATGGTCGCCAGC
ACAGTGCCTCTTCCGGGTCCGGCGTTGCTCCGGGCCCCGGCATCTCCCCG
GCACCTTGCATCTCCCGGGTCTGCTTCCGCGTGCGGCCACTCTCAAGCCC
ATGGCGCAGCGGGCCAGCGTTCGAGGCGCCCCAGAGGAGTTTCTTCCCTT
CTAGCCCGCGGGGGTAGCGGTCGTCGGCTGGATCATACTTCAACTCCTCG
AGGTTCTCGGAGTCGCCGGGATCACCACCGCTACCGCCGTCCGC
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protein sequence of EsuBft878_2a-0001

>EsuBft878_2 ID=EsuBft878_2|Name=EsuBft878_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MRASAASNPHSRPPCFRPYRARSTLTTLPDMLPQPSGNLRYISSFSXXXX
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mRNA from alignment at Scaffold_529:92500..93876-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft878_2a-0001 ID=EsuBft878_2a-0001|Name=EsuBft878_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1377bp|location=Sequence derived from alignment at Scaffold_529:92500..93876- (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ACGACCTCTCCATCCACCACCTTCCGGAAGACACACGGGTCAACCCTGCA
CTGCTCGTATCCATTCTCGATGAGGGCATCGGCAGCTTCAAACCCCCACT
CACGGCCACCCTGCTTTAGGCCGTACAGGGCACGCTCAACCTTGACCACC
TTGCCGGACATGCTACCACAGCCTTCCGGGAACCTGAGGTATATTTCTTC
TTTTAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGGAAGTCG
ATGCCGGGGATTTGAGAGAAACCCCGCGCAACCATACGGGCCTTGAAGTC
GACTATCAGATCCTTCTCATTCGTCTTCCAAGAGAACACCCACTGTGAAC
CTATGGCCTTTCGCCCCTCGGGCAGCTCCTTGACCTTGGTAAAGGTTCCA
GTCTTGTCGTGGCCATCTATCTCTTTCTTCATGGCCGCCTCCCAGAAAAC
CTTGCACTTGGAACACATCACATCCTTGTACGTCATCGGTACTGCTTCCA
CATTACTCGGCTTCTGCCCGATTGGCGAGGTCATACTTAGCTGTGGGTCT
GGGAGTGGTTGCGAAGTCCCGCTGGCGTCGACCTCAGCCCCGAACGCCTG
CTGTTCCGGGCCCAACACTTCCTGCATCTCCACCTGTACATCTCCTCCAT
ACGGCGTGTCTGCTCCTCGTCCCACTGCTCCTTCACAAGCGAGTCGCAGA
TGTAGTCCTCAGCAATCCCCGTCCCGCCAGTTTCCAGGATGGTCGCCAGC
AGTGCCTCTTCCGGGTCCGGCGTTGNCTCCTCCATACGGCGTGTCTGCTC
CTCGTCCCACTGCTCCTTCACAAGCGAGTCGCAGATGTAGTCCTCAGCAA
TCCCCGTCCCGCCAGTTTCCAGGATGGTCGCCAGCAGTGCCTCTTCCGGG
TCCGGCGTTGCTCCGGGCCCCGGCATCTCCCCGGCACCTTGCATCTCCCG
GGTCTGCTTCCGCGTGCGGCCACTCTCAAGCCCATGGCGCAGCGGGCCAG
CGTTCGAGGCGCCCCAGAGGAGTTTCTTCCCTTCTAGCCCGCGGGGGTAG
CGGTCGTCGGCTGGATCATACTTCAACTCCTCGAGGTTCTCGGAGTCGCC
GGGATCACCACCGCTACCGCCGTCCGC
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Coding sequence (CDS) from alignment at Scaffold_529:92500..93876-

>EsuBft878_2a-0001 ID=EsuBft878_2a-0001|Name=EsuBft878_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_529:92500..93876- (Ectocarpus subulatus male Bft15b)
ATGAGGGCATCGGCAGCTTCAAACCCCCACTCACGGCCACCCTGCTTTAG
GCCGTACAGGGCACGCTCAACCTTGACCACCTTGCCGGACATGCTACCAC
AGCCTTCCGGGAACCTGAGGTATATTTCTTCTTTTAGCTTNNNNNNNNNN
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