EsuBft877_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft877_9a-0001
Unique Name	EsuBft877_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_103	contig	Scaffold_103:210760..216247 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft877_9
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	199
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft877_9a	EsuBft877_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_103 210760..216247 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft877_9a-0001	EsuBft877_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_103 210760..210942 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft877_9a-0001-exon	agat-exon-83360	Ectocarpus subulatus male Bft15b	exon	Scaffold_103 210760..211044 +
EsuBft877_9a-0001-exon	EsuBft877_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_103 213609..213930 +
EsuBft877_9a-0001-exon	agat-exon-83359	Ectocarpus subulatus male Bft15b	exon	Scaffold_103 214857..216247 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft877_9a-0001-cds	EsuBft877_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_103 210760..210942 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft877_9a-0001-exon	agat-three_prime_utr-22559	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_103 210943..211044 +
EsuBft877_9a-0001-exon	agat-three_prime_utr-22560	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_103 213609..213930 +
EsuBft877_9a-0001-exon	agat-three_prime_utr-22561	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_103 214857..216247 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_103:210760..216247+
coding sequence from alignment at Scaffold_103:210760..216247+

spliced messenger RNA

>EsuBft877_9a-0001 ID=EsuBft877_9a-0001|Name=EsuBft877_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1998bp|location=Sequence derived from alignment at Scaffold_103:210760..216247+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTCTTTCGGCCATCCGCTGGTCCCTCCGGGCTGCTGCTGCTGGTG
CCGCCGCCAGCCATCCTGTGGCACACAACAACCTACTCCTCTCTCTGTCC
CTACTCGGCCCAGGATGAACTCTCCTAGAAGAAGAAGCACCCGTGCGGAG
GGCGTCCGCTTCAGGCCGCCGGCATGGGCTTGACCGCCTCTGCGGTGAGC
GACGCCTGCTGCACGCGCAAGCCTGCCCCTGCCTGCTGAGGCCTGCAAAT
ACTGTGGGACGATGAGGGGTCTTCATCGTAGAGAGGCCGGACCGACGAGT
TCGTGTTCCAAGCCTGGGCATCGAGCAATGTCAAGACACGTCTGAAGATG
GGCGGCAAGACGTTCGTCGCAGGCGTTTCCTCGCGGACGTCTTCGCGAAG
TGCTTCACCACGTTGCGTTGGCTACGACAGCGCATCATCGAAGGGTGTGT
GCCGCACGCAATACACTGCTGTCGTGAAGTTTGAGGAGAGATTTCACTCA
CCCTACAGCAGCAGTCGTCCCTAGGCTCGTCGCGCGTGCGCCCTCGCGTG
TGGTCCTAATGGATTACTGCTGTCCAAGCACACTGTGGCTCGCGACCACC
ACGACAGGGCGACTACCTTCTGTATGTTGTCGGTGAGGCTCCACCTGCAG
GGCAACACGTCGACGAAACGGGTTGCGATTTCCGCCCAAGGGATGAAAAA
TTTGAAACGTAGACCAGCCACGACGTTTTTGTTGGTATTGAGAACTGCTG
CAGAAAGTGCGCATTTGTTGCCATCAACCGTGTCTTTCGTAGTTTGCGAG
CGAGGGAGGAGCCGACTCCTACGGAGTTGGCTGCCGCCGTTGCCCGTAGA
CACCTAACTCAAACGAGAACGATGATTGGTTCTACGGTAGCCCTGCCTCG
GCCACCGCTATGCGTTGTACGGGTGTTTTTTTTCCCCCCAAGTGGCAAGT
CCCCGCGGACCGCAGGTTATACCCTGCATCAAGAAGCGGTCGCTGTGTCT
GTGTGTGCAATGTTGCTACCATGTTCGCAGGACTTGTGTAAGAATCTCAT
CAGGGTCGTTGCGGTCTCTCCACCATTATCAAGACACAAGCGGACTTAGT
TTTCAACGAGCTGTCCGGAGGCTTTTCTTGCGCATTCTTTGGAATACGTT
TTCCGTCGACTCTCTGAAGCCGGTCGTTTTCATTTTGTGAGGGCTTTGGA
ATTCGTATTTGGCGGGGGAAATGATCAAACTAGGGAATAAGAAAATTAAC
TTCCGGTGTCGATATGACAACGTTGTCCAAGTCTCTTGTCCACCGAATGG
AGGGATCTCACAATAGAAGAATTCTTGTGGACGTACTTTGGTATGCATTT
ATTTGAGTGTACTTTTAGGGTAAGTCAGCCTGCGACCACGGGAATCGACT
GCGTCCAGTGTTGGATCAGTGCGGACATACGAAGGTACTGGGTCGACAGA
GATCTGAACGGTTTATATGTGAAGACGACATCAACAACAATCCATCCGCG
CGGGTCATGATTGTTGTCCAGCCAGGGCTACTCCTCTACGGCTGGGAAAG
GTTGTGAAAGCGGTCCCGCACCTTTCCGTCCACCAGACCGTCGCAGCAAG
GGGTATGTCGCAGGATTGATCGAAAACCAACAGACATACGTGTCACCCTT
TCCCCGAGGTACAGATTCCGCTACCGATAGAGTTGTTGTTTGTCTTCACA
TTAAACCGTATGTCAGTTGCTAAATGCCAAAATCTAGCAAAAGACTCTCA
GCCCGTGGTCACGAAAGTGCTAGAGCCATCTGAGGATCTAAAGAACACGC
ACACATCTGACGAGAAAAAGGTATGCAAGAGCCCGAAGAGGTACACCTAA
AAATCCCTGCAGCACCGTATGCGTGCCCAAAAACTGAACTGCACGTCCGT
CCCACCGTTCGACTACAGTAGCATCACCCCCTCCCTGTCCCACTCTATAC
CAAAACGGAAGATTGCCGACTACAGCATAATGCTGTCTGAAGTGCNNN

protein sequence of EsuBft877_9a-0001

>EsuBft877_9 ID=EsuBft877_9|Name=EsuBft877_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=60bp
MDSFGHPLVPPGCCCWCRRQPSCGTQQPTPLSVPTRPRMNSPRRRSTRAE
GVRFRPPAWA

mRNA from alignment at Scaffold_103:210760..216247+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft877_9a-0001 ID=EsuBft877_9a-0001|Name=EsuBft877_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5488bp|location=Sequence derived from alignment at Scaffold_103:210760..216247+ (Ectocarpus subulatus male Bft15b)
ATGGACTCTTTCGGCCATCCGCTGGTCCCTCCGGGCTGCTGCTGCTGGTG
CCGCCGCCAGCCATCCTGTGGCACACAACAACCTACTCCTCTCTCTGTCC
CTACTCGGCCCAGGATGAACTCTCCTAGAAGAAGAAGCACCCGTGCGGAG
GGCGTCCGCTTCAGGCCGCCGGCATGGGCTTGACCGCCTCTGCGGTGAGC
GACGCCTGCTGCACGCGCAAGCCTGCCCCTGCCTGCTGAGGCCTGCAAAT
ACTGTGGGACGATGAGGGGTCTTCATCGTAGAGAGGTGTGTTGTAATCAA
GACCTGCGAAGGGGTTAGTCGTTTGTTCACTGGGCAGACATCCACTCGGG
CTCTGTTTTTCCTGTAGTGACAGAAACGGCGTATGCGGGAGAGAATGAGT
GCGTCGGGGTGGCGCGCGTTCGCCCTCCTCGAAAATGGCGCGTGCCCTCA
GCAAAAAGGTGTGCGTGCCTCACTTGGCTCACGCGCGAAACAGCACTCCT
TTTTCGTGGCACGGGCGTTCAGGGTACAAGGCTCCTGTATCATTTTGTCC
TGTTGCATTCCTGTGCCCGAGGTGGATGACTGGCTGGTCATTTCAACTCT
ATTGCCGTGCTGAACACAGCAGTGAGTGTTGAGCAAGTGGTGGGCGGCCC
AAGGCCAACGCGGCAATGCGTGGTGATTGTTCCCTCCCTAGTTGGTGGTG
CACATGCGTTCGTAGCTTTTGTATGCACTGCACACCTGTAGCAGAGCCCT
CAATGCAATTTTTGACATGGAGTACACTTGCCCAGCTGCCGTGCAACGTT
GTGTGCTTCGATTGGCCATGTTGATGACCTCGGCACTCGAGTGCATGTTG
CTTGCTACTACTCCCCACCATCGCCTGCCAAAGGACATTCCGCCATTCTC
CCGCGTTTTATATTCTGTGCAAGGCATTGAACTGCACCCACGACTACTTG
GTTGTCGTGCAGCCGCCGGGAAAGGACATGCAGAGCCGCAACTCGCTTTG
CCATGGTGCCTGTTTCCATGGCTACACATGTCCTGCTCATAATGACGCTC
GGTTGTGATCCAACAAATTCATGCCCTAATGTCCCACCTGCTGAAATGAT
GGCGTGTGTGTGGCTGGGAATCGTTGTCCCTCTTGGACACCGACCACAGC
AGGGGTATTGTTGTATTGCGTACCACAGCTGTTGGTGACATGACACACAG
TATCATTGTAGTAGATACCACAAGATGCTATTTAAAACCTTCATAAAGTT
GCACCTTCGTGAAGTTGCGCAATACGCCACCTCGGGGCTTTGATTTGTCA
TGAGCAGTGGCCATAATCGGGGACACCCGGTCTAAACACGGCCATAATCG
GGTACTCCCACAAGATGCTGCTGGAAACAACCGCATGACACGATCTGATT
GGCCGACGCCCACGCCTACCCGACCTTGACCACCTTTCCACCGGGTGCAC
CCGATCTTCGCTACTCGCCCCCTAGGGGGATACCCGGTTTTTCTTTCCCC
TGCCCGAAAATGGCTGGGCTGTTCGGCCAAACCCCATGCACACAGGTACA
CCAATGCCTTGCGCTCGAATTCAGACGTTCTGACGGTGGGCGGTGGCGGA
CCCACTGCCGGCGGTGGGACTCTCGCTTGAGGGAAACGGCATCAGGGCGG
TCGGTGTAAATGATCGACAAGAGCTGTGGATGAATGCCTCACTCACGATA
TGCGACACACACACGAGACACATCTAAAAAGATTTGCTACTGCTGCTTTC
TCATCGGTGACAAACGAGCGGCCAGCGGTGTGCGTCCTACCCGTGATTGT
GTGCATGTGGGTTTTCGCCGAATAACTCGCCATTTTCGGGTAGGCGAAAG
AAAAACCGGGTACTCCCCCGGAGGGTGAGTAGCCAGGATCGGGGGCACCC
GGTGGAAAGACGGTCAAGACCGGGTAGGGGCAGGCGTCGGCCAATCAGAC
GTTGTCATGCGGTCGCTTCCAGCAGCATCTTGCCGGGACACTCGATTATG
GCCTTGTTTGGACCGGGTGTACCCGATTTCCGGCACTGCTCATTTGTTGT
CCTGATCAAACCCTCAATACCACCAGCTGTGAGTACATTCACGGGTGTTT
TTCACGGATGACGCTAGAAATCATACGGCTACAAGTATGGTATCTACCAC
AAGACCATCCGGGTGCAACGTACTTCCAAGAAATCCCAATCGTTTGTCAC
ACAGGTTTGATATTTTCTGTAAAACTAACGTAAACGTTGTGAACACTCGT
TGCTCGTGTTGAAGGTTGTTTGTTTCTCTCGAGCTAGCTACAAATAGCCA
GCAGTCTCATTTGCGACAGGGGAGGGCCGACGCGACTTCGAAGCCCCCTC
GGCGTGTCAGAGGCCCACTTTTCCCTCTTCCTCGGAAGGAGAAAACGCGG
TTTTGCCTCCGCTTCGAGGGTCCCATCGTGACAGCGTCAATCTCTTGACC
CTTTCCCTTACTAAAGGCTGCGACATCGTTCCTCTGACACGTGCTCTGCA
AAGAGCCATGTCGGGGGGTGCGCCGTGTTGAGTTTGCCCGTTTCCGACAA
CCCCACGGAATTACGAGCATAATTATTCGGCGAGACATTTTCATACATCT
CTGAAGCCGTAAACTAGACAACCGGTGTGGTAGGATTGTACTACTGCTGA
CGACTAAAATTGCCTGGTTCTCGCGAATCCTATTCACGAGGGCATGGAGT
CATTATTGCCAACCACGTTCGTTACACGCAATGGTGTCCTTGTCCACCCG
TTTATTCCCTATGGTGTCGAGAAACTCGTCTCTGCCCAAACTCACGCGCC
CCTGGTTTCTTGTCTTTTTCTAAAACCTACCATTTGCGTATGCAATCAGG
CCGGACCGACGAGTTCGTGTTCCAAGCCTGGGCATCGAGCAATGTCAAGA
CACGTCTGAAGATGGGCGGCAAGACGTTCGTCGCAGGCGTTTCCTCGCGG
ACGTCTTCGCGAAGTGCTTCACCACGTTGCGTTGGCTACGACAGCGCATC
ATCGAAGGGTGTGTGCCGCACGCAATACACTGCTGTCGTGAAGTTTGAGG
AGAGATTTCACTCACCCTACAGCAGCAGTCGTCCCTAGGCTCGTCGCGCG
TGCGCCCTCGCGTGTGGTCCTAATGGATTACTGCTGTCCAAGCACACTGT
GGCTCGCGACCACCACGACAGGTGTGCGGTTCGATTGAGGTAATGAGGGT
AAGCAATAGTCACGAATGCTGTAATGATTTAGTTGACGTAGGTTGCAGCC
CTCCCCAATTGCTGGAAGTTGATGAAGCACTTGGAAGTGCATTAAAGGAA
CGCGGGTGTTGCGGTCGCAAGCGAGTTGAACCGTCATCGTGGTGGCATTG
GAAAGGAGAGAGCGATGAGGAGATGTACTACCCAGCTCACTATTAGGCCC
CTGCAAAAGGCAGACAAGGCTGATGCCGATAGCTAGTTTCAAAGACTGAG
CTCTCTTGTTTTGTTTTGCCGCGCACGAGTGTTTGACGAGTTTATATTCC
AATCAATACTCGGCCGACCCCCAGAACTCTCCATTTTTTGTGCCCTGTAG
AAAATACGATATATCAACGCGTCATGAAGCATGAGCGACGAGGTTCGGTG
GTGGACGGGGATGACGATCACAAATGGATTCCCCTTCAAGAGTCCCCGGT
TATCCCCGTGGGATGAATGATGTAAACCTTGGATTATAAACAGGCCCGAC
TCGTCCTATCCCCGGCCCGTCCGCCGTGCTTCCATCTATGTTTACTAGCT
TCGTGTGTGTGCAATTCTCTGTCAGACTCTACCTCGCGCTTGATGGGAAA
TCGATGTAAGAAAACCCGTTCAACTCATTTTCCAGCGTGGGTTCCCCCTG
GGTTGCCGAAATGAAATCGGCCGCGATGTATACGCCTGTCCGTACCAAGC
CCGGAACAAACTTCCCTCTGTTGCAGTCGCCCCGTCACTTGTATCATGAG
TACACGGTAGTTTTATGCGTTGCTTCATGAACCTGTTGCACTCCGCTTGT
GCTGACGAGTACGTCGAGTTTTGTCCCTGAGAATCGAGCGAGCTGCCGTC
CTTCGTGTCGTTGCCTGACACTTTTTCCGTTTGTCTCTTGTCGGCAGGGC
GACTACCTTCTGTATGTTGTCGGTGAGGCTCCACCTGCAGGGCAACACGT
CGACGAAACGGGTTGCGATTTCCGCCCAAGGGATGAAAAATTTGAAACGT
AGACCAGCCACGACGTTTTTGTTGGTATTGAGAACTGCTGCAGAAAGTGC
GCATTTGTTGCCATCAACCGTGTCTTTCGTAGTTTGCGAGCGAGGGAGGA
GCCGACTCCTACGGAGTTGGCTGCCGCCGTTGCCCGTAGACACCTAACTC
AAACGAGAACGATGATTGGTTCTACGGTAGCCCTGCCTCGGCCACCGCTA
TGCGTTGTACGGGTGTTTTTTTTCCCCCCAAGTGGCAAGTCCCCGCGGAC
CGCAGGTTATACCCTGCATCAAGAAGCGGTCGCTGTGTCTGTGTGTGCAA
TGTTGCTACCATGTTCGCAGGACTTGTGTAAGAATCTCATCAGGGTCGTT
GCGGTCTCTCCACCATTATCAAGACACAAGCGGACTTAGTTTTCAACGAG
CTGTCCGGAGGCTTTTCTTGCGCATTCTTTGGAATACGTTTTCCGTCGAC
TCTCTGAAGCCGGTCGTTTTCATTTTGTGAGGGCTTTGGAATTCGTATTT
GGCGGGGGAAATGATCAAACTAGGGAATAAGAAAATTAACTTCCGGTGTC
GATATGACAACGTTGTCCAAGTCTCTTGTCCACCGAATGGAGGGATCTCA
CAATAGAAGAATTCTTGTGGACGTACTTTGGTATGCATTTATTTGAGTGT
ACTTTTAGGGTAAGTCAGCCTGCGACCACGGGAATCGACTGCGTCCAGTG
TTGGATCAGTGCGGACATACGAAGGTACTGGGTCGACAGAGATCTGAACG
GTTTATATGTGAAGACGACATCAACAACAATCCATCCGCGCGGGTCATGA
TTGTTGTCCAGCCAGGGCTACTCCTCTACGGCTGGGAAAGGTTGTGAAAG
CGGTCCCGCACCTTTCCGTCCACCAGACCGTCGCAGCAAGGGGTATGTCG
CAGGATTGATCGAAAACCAACAGACATACGTGTCACCCTTTCCCCGAGGT
ACAGATTCCGCTACCGATAGAGTTGTTGTTTGTCTTCACATTAAACCGTA
TGTCAGTTGCTAAATGCCAAAATCTAGCAAAAGACTCTCAGCCCGTGGTC
ACGAAAGTGCTAGAGCCATCTGAGGATCTAAAGAACACGCACACATCTGA
CGAGAAAAAGGTATGCAAGAGCCCGAAGAGGTACACCTAAAAATCCCTGC
AGCACCGTATGCGTGCCCAAAAACTGAACTGCACGTCCGTCCCACCGTTC
GACTACAGTAGCATCACCCCCTCCCTGTCCCACTCTATACCAAAACGGAA
GATTGCCGACTACAGCATAATGCTGTCTGAAGTGCNNN

Coding sequence (CDS) from alignment at Scaffold_103:210760..216247+

>EsuBft877_9a-0001 ID=EsuBft877_9a-0001|Name=EsuBft877_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=183bp|location=Sequence derived from alignment at Scaffold_103:210760..216247+ (Ectocarpus subulatus male Bft15b)
ATGGACTCTTTCGGCCATCCGCTGGTCCCTCCGGGCTGCTGCTGCTGGTG
CCGCCGCCAGCCATCCTGTGGCACACAACAACCTACTCCTCTCTCTGTCC
CTACTCGGCCCAGGATGAACTCTCCTAGAAGAAGAAGCACCCGTGCGGAG
GGCGTCCGCTTCAGGCCGCCGGCATGGGCTTGA