EsuBft873_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft873_7a-0001
Unique NameEsuBft873_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_246contigScaffold_246:480316..486218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FYN8
ProteomeIdEsuBft873_7
Protein domainsIPR007087
Protein domainsIPR015880
Protein domainsPTHR14677
Protein domainsSignalP-TM
Protein domainsIPR000058
Protein domainsSSF118310
Ownerapollo_admin@sb-roscoff.fr
Notezinc finger an1 and c2h2 domain-containing stress-associated protein 11 os:arabidopsis thaliana [Automatic annotation]
Nb exon7
Max annot lvl2759|Eukaryota
Length1454
Hectar predicted targeting categoryother localisation
Evalue3.72e-149
EggNOG OGsKOG3183@1|root,KOG3183@2759|Eukaryota
Ec32 ortholog descriptionAN1 and C2H2 zinc finger protein
Ec32 orthologEc-17_000160.1
Date last modified2016-06-14
Date creation2016-06-14
GOsGO:0001101,GO:0008150,GO:0009719,GO:0009725,GO:0009737,GO:0010033,GO:0010200,GO:0010243,GO:0033993,GO:0042221,GO:0042493,GO:0050896,GO:0097305,GO:1901698,GO:1901700
Descriptionzinc ion binding
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0044424
GO0008270
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft873_7aEsuBft873_7aEctocarpus subulatus male Bft15bgeneScaffold_246 480316..486218 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft873_7a-0001EsuBft873_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_246 480912..486203 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft873_7a-0001-exonagat-exon-21201Ectocarpus subulatus male Bft15bexonScaffold_246 480316..481115 -
EsuBft873_7a-0001-exonagat-exon-21206Ectocarpus subulatus male Bft15bexonScaffold_246 481537..481689 -
EsuBft873_7a-0001-exonagat-exon-21205Ectocarpus subulatus male Bft15bexonScaffold_246 482899..483073 -
EsuBft873_7a-0001-exonagat-exon-21204Ectocarpus subulatus male Bft15bexonScaffold_246 483475..483576 -
EsuBft873_7a-0001-exonagat-exon-21203Ectocarpus subulatus male Bft15bexonScaffold_246 485116..485184 -
EsuBft873_7a-0001-exonEsuBft873_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_246 485956..486091 -
EsuBft873_7a-0001-exonagat-exon-21202Ectocarpus subulatus male Bft15bexonScaffold_246 486200..486218 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft873_7a-0001-exonagat-three_prime_utr-22521Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_246 480316..480911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft873_7a-0001-cdsEsuBft873_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_246 480912..481115 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft873_7a-0001-exonagat-five_prime_utr-14582Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_246 486204..486218 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft873_7a-0001 ID=EsuBft873_7a-0001|Name=EsuBft873_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1454bp|location=Sequence derived from alignment at Scaffold_246:480316..486218- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATTGTGACATTTTCGATGCGCACTTTCTGTCTATCGCACCGAAGCTACGC
GGCTCACTCATGCGCGGCATCTGGAAACAAGGACTTTCGAGCCCTGGTGT
GTCCCCTTTGCAAGAACACAGTTCGCTTCAACGGGGGCCAGGACCCCAAT
CAGCAGTGGGATTTGCACACGAGAACAGACTGCAACCCCGAGGACTACAA
GAGGAACAAGCCGACGAAGAAGAGATGCGCAGCGGCGAGCTGTCGAGTGG
TACTCGGACCAACCAACGCACAACGGTGTGCCAGCTGCTGCAAGGAGACG
TGCTTGACACACAGGTTCCCGGACAGTCATAACTGCAGCGCTTCCAGCCG
TGGCGATGCGAGGGGTCCCGCAGCGGCCGCTGCTGCTAGGCGAATGGCAT
CCCAGGCGAACCAATCGCGTCCGATGTCGCTGAGGGAAAAGGGAGCACAG
AAGAGGGCCGCCGCATCGTCCCGCCGCGACGCTGACGCGAACACGGCTCG
GGCTACCGCCGATCGACGGAGAAGGGAGAACCCGGCGGCTCAAGCACGAA
GCTTCGGGGGTAGTGGCGGGCAAAGCGAGCAATGCCCGCAATGTGGCGCT
AAATTTGGCGATATCGGATCGCTTGTAGCTCACGCAGAGGCCTTCCACTC
CGAGGGGCAGCAGTTTCGAGCACACGGCGGTGGCGGCAGCGGAGGTAGCA
GTAGCACAGGAGAGACTTGCCCAATCTGCAATCTCCATTTTTCTGACGTG
GCGCTGCTGGTTTCACACGTGGAGGCGGTACACCCGGACGGTGCTCGGGG
GGGTTCGACTTTGCAGGGCGCAACGTCCAGCGGGGCAAGCTCTTGCTCAA
TATGTTGACTGTCTCGCGCGCTGGTGGCTCTTGTGTTGTGGAGAGAGCCA
GAGAAAATTCTGCACGAGACGCTTTTTCGAGACGTGTACGTTTTGCAGCA
CACGTGCAGATTCTGTTTCGTAGAAAAGAGTCTTGGCGACCAGAGTGTGG
TGATCCTGTGCGCGCTTGTACGCGATTATTGCCGCGCACCGGCTAGTTCT
TCGCATGGTGAGAAACGTTGCGGAGACCGAATCGTTCCGGGAGGGTAGGC
TTTCATTCCCGATAGTTGAACGGACGGGGCGTTGCAGGCTGCCGTTGAAG
GGTTCAACGGGAAAGCTGCTGTTCGTGTGTTCTCATTCTCACAAGTCGAA
GGTACTAGCGGGAGTTTTGAAGGTTGTGTACCTCACGATGTGTTATACGA
TAAAACGCTGAGCTACATTTCGATTTTCGAGTGCCGGAGGCCGGAATCGC
TTTTTCGTGGGTTTCATGAGGGCATGATATGATGTGTGTCGGGGAAAGGC
AGGCAGTGTTGTACGCGTGCGTTGCGCTCGCCCACCTCAGCGACACTTTC
CAAGGCCTCGCGATCGGAATGCTTGCAAATAGTATGTGGAACACAGGTAT
TCAT
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protein sequence of EsuBft873_7a-0001

>EsuBft873_7 ID=EsuBft873_7|Name=EsuBft873_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=280bp
MRTFCLSHRSYAAHSCAASGNKDFRALVCPLCKNTVRFNGGQDPNQQWDL
HTRTDCNPEDYKRNKPTKKRCAAASCRVVLGPTNAQRCASCCKETCLTHR
FPDSHNCSASSRGDARGPAAAAAARRMASQANQSRPMSLREKGAQKRAAA
SSRRDADANTARATADRRRRENPAAQARSFGGSGGQSEQCPQCGAKFGDI
GSLVAHAEAFHSEGQQFRAHGGGGSGGSSSTGETCPICNLHFSDVALLVS
HVEAVHPDGARGGSTLQGATSSGASSCSIC
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mRNA from alignment at Scaffold_246:480316..486218-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft873_7a-0001 ID=EsuBft873_7a-0001|Name=EsuBft873_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5903bp|location=Sequence derived from alignment at Scaffold_246:480316..486218- (Ectocarpus subulatus male Bft15b)
ATTGTGACATTTTCGATGCGTACTACCAATGAAGCAGTCGAAAGAGCGTG TTTTCTCTTCCGAGTAGACAAAGATAGTGATGTTCGTCTCTTGTCCCCCC TTGTTTGTCTTGAGTACCCTGCCACAGGCACTTTCTGTCTATCGCACCGA AGCTACGCGGCTCACTCATGCGCGGCATCTGGAAACAAGGACTTTCGAGC CCTGGTGTGTCCCCTTTGCAAGAACACAGTTCGCTTCAACGGGGGCCAGG ACCCCAATCAGCAGTGAGTACAATACGCATCGTCACACGCAGTCCCTCGC CCCCCCAGTCCCTCCGCACCACTCGGGGTTAATGTAGACCTGAGGGCCAC AAAAGTGCTTATAACTGCCATGTTGTGGAATTGCGGTTGTGCTTAGTAGA TGGAACCACCAGATGGTTGTTTGTCAAGCGTTTTTTTTTCCTTTCAAACA TGGAGCGACGAGAGCAATTCGTGCTCTGTTTTTGTCGCGTGTGTGTGTGT AAGACAAGGCAACGAAAGTGACTCGCACCGCTGCAGCGTAGACCGCGTTC GTCGGTCCCAGAGCTGCTGCTTTGGCCGATCTCGTCTTTGACTTGCTACG TGACGGCAAGCATTGCTTTCATAAGTGAAGGCCAAGCAAAGGATGATCGC TCTGTACTTTACATGCATGGAGTGAATCATATTCCAGCCCGTGTTGCCAG TTGGTTCTGCAGTGAGCGAACGACTCTGAAAATGGTGCCGACGCTGACGG GCGGAACTCTGCTTCGGTACTGCGGAACCCGCTGTTCACGCGCTACTGCT GTAGTTGCTTATCGGGGGCTGCTATTTGTGAGTTGTGGCGTTTTTGGCGC TCGCTGGATTTTTGCTTTCCTTTCGTGCTTGCTCTGTGCCCCCTGTGCGT GTTCTCTATTCTTTTTGGTTGTATTTCTTTTGGCGTTTTCACATCTGCTG GTCTGCGGATTTGCTTTTCGGTGCTTGTTGATGTTTCATCGTCTGCCCTT TGTTGTGCATTTGTGTTTTTCTGGATCCGAGCAGGTGGGATTTGCACACG AGAACAGACTGCAACCCCGAGGACTACAAGAGGAACAAGCCGACGAAGAA GAGGTGCGGCGGGAGGGGGGTGTGTATTCATAGTCGTGCATGCCGTAGTC GTTAGACCACTGACCTCGCATCCCTACAAAGCTGGGACGGAGCACGCCGG GTTCTCACCGGACCGGGCTCTCACATCACCAAGCGCGAAGCGCCATGAGA TATTCGGCGAGTCGCATGAAGGGTGCGCTGCATCCTGCTAACGGTGTTCG GCATCTTGTGCTTACTTCCTTGCGTACGGATGACAGCTGCGTGTGACTTA TTTTATTTTCTGGTGCTTTTACTTCCAGAGACAGTTGTAAGCACTGTGTA ACTGCCTTGAGGGTGCTTGACCATTTTAACACAACGTGGTGCGATCATCC CCCTTGCGCGGAGTGAGGGATCTCCACCCCGCACAACATGATCTACTCGA CCACCATCATGGTTACCGCCAAAAGAAAAAATCAGAGGTAAAAAAAAGAA CCCGGTAACCTGGTTGCCGAGTTCACGAAGTGAGTTGGCTTGTTTTACAA CGTCGTTGCCAAGCGACGAAAACCCAATCCCGATGGCAAACACCGAGGGG GGGGCTTTTTTGACAACGTCATTGTCAAGCGAAGAAAACCCAATCCCGAT GGCAAGCACCGGGGGGGGGGCGGCTTGTTTTACAACGTCGTTGCCAAGCG ACGAAAACCCAATCCCGATGGCAAACACCGAGGGGGGGGCTTTTTTGACA ACGTCATTGTCAAGCGAAGAAAACCCAATCCCGATGGCAAGCACCGGGGG GGGGGCGGCTTGTTTTACAACGTCGTTGCCAAGCGACGAAAACCCAATCC CGATGGCAAACACCGAGGGGGGGGCTTTTTTGACAACGTCATTGTCAAGC GAAGAAAACCCAATCCCGATGGCAAGCACCGGGGGGGGGGCGGCTTGTTT TACAACGTCGTTGCCAAGCGACGAAAACCCAATCCCGATGGCAAACACCG AGGGGGGGGCTTTTTTGACAACGTCATTGTCAAGCGAAGAAAACCCAATC CCGATGGCAAGCACCGGGGGGGGGGCGGCTTGTTTTACAACGTCGTTGCC AAGCGACGAAAACCCAACCCCGATGGCAAACACTTGGGGGGGGAGAGGGG TGTTATCTAACGTATTGGTGACCTAGCCGTGTGACGACGAACCATGCGTC GCTTGCGCGACGGAGCACCGTCGTAGGCGCGCTCGACGTAACACACGATT TCCTTCGCCTCGCAAGCCCTCCTGCCGCCGTTGTACGTACGCGACGAGTC TCCATGTTTTGTTCGTCACATCGTTCCCTCAAATAGGAAGTTTGAGGTTC GAGCATCCATTCCTGAGTCCATTGCCGCACCGTCTACGTTATCACGCTGC TTGTCGGTGCGGCATCATGAGGATGATTGGTAACAACCTCCGCGGGTGAC TACCATTTGCTTTTTCTGGTGAGAGTCGCTCCCGCCTTTGCGGCCTACGA CATGGCGGTGCCCATCATGCCCATCACTTCCCGTATAACAGCTTCGTGTG TGCTTCTGCCCATCACATCCCGCACTGTCCTTCGCACAACAGATGCGCAG CGGCGAGCTGTCGAGTGGTACTCGGACCAACCAACGCACAACGGTGTGCC AGCTGCTGCAAGGAGACGTGCTTGACACACAGGTTCCCGGACAGGTTCGT CTTGCCTCCAAACGTCCTTGGGCACATTTCCTGATACGTCTGTGCGACGT CTGTTGTTGAGAGCCAAGTAATCATGGCATGATGGAAAACCGAGTCACTG ATCCCGTCTCACATGAAAGGGATAGGGACCACCTCCTGTCGAGGTAGCGT TCGGGTTCTTAATACCCTACCGCTGCAACATGCCCAAATGCAGAGATTCT GGTGACCGGTGTCACAAGCCGTATTGCGCGATTGTCGTGCTCAAACATCA TCCTCTGACATCCACAATAGCACAATTATCACAACCCTACTCACGTCAAT AGAACGAGTGTCTCGACCTCGAAACCAGGACGGCGACGGGCAGTTCGCGT TATGTAACCGTTCTCCTTTGCTGTCACCGTCCATCTACATCCCAGTCATA ACTGCAGCGCTTCCAGCCGTGGCGATGCGAGGGGTCCCGCAGCGGCCGCT GCTGCTAGGCGAATGGCATCCCAGGCGAACCAATCGCGTCCGATGTCGCT GAGGGAAAAGGGAGCACAGAAGAGGGCCGCCGCATCGTCCCGCCGCGACG CTGACGCGAACACGGCTCGGGTGAGACCGACTTTGTTGTGTTGATGGGTG GGTCCTCTGGGTCGCTGGTTGCTGTGTTGTCTTTTGTTTGGGTTTTGGTC GGGGTATTCGGCAACTCACAACTCCTTGGCAATGGGGCACGCACGACACC GCAAACAGCAGTGCGGGTGTGTGTATGTGTCACCCGGAGCACGGTTGCCA CCACAGGGAGAGACCCAAGTAACCATCTTCGGTGCTCCAGGCTCGCATGA CGTGGTTCGGGTGACGTGGGTTTGCGAGTTTTACAGCTTTCGCGGGGGCT GCCGTCGACTTTCTGTTCGTCAATCTGTCTTTCACCGCTGGGGTCCGAAC GGGATCGTGCTGACCTAGTACGGTGCGGTCTTGTCATGCTGCAGTACACC AAGGTGAGTTGTGAGTTAATTCGTCACAGTCAGCGAGAAACGGCACCCGG CAAATGGACAAGAGTGTAGTCGAGCACCCTCTGAAGTGTAACTGAAATGC TCGGAAAGTGGTGTCCACAGAAGTTCCCGTAACCCCGTTGCAAACCACCC GTGATCCTTCAGCGAAACGCTAAACCCTTGTGCGGGTGCTTGGCTGTGGC GCGGGAAAACGTAAGTCCACCTGAGCCTATGCCCCCCGCGCCAATCCTCC CCTAGCACGCTCTTGGGCGTGGTGGCAGTTTTCCAATCATTTCCAAGGCC TGTGTAGAGTACTCCTTGGACTTGCTTGACGTTCTACGATAGTGAAATAC GCTCTCACGCAAGCTTCTTGTATCAGTAGCCTTCGTCCTCCTAGGCTTTA TTTTGCGTTGAGGGTGTGCAATGGCATCTGTTTCCGAAGTGGTAGCATGT TCTGGTCTGGAGTTACCCGACCAACACCGTTCGTGAGAGTCGTTTCCGGC AGCTTGCACGGAAAACATGCTAAAGAGCTGCAGGCATTAGGTAGCAAAGA CGCAATTGATAGTTCTTTTGCAAGTCACACCTCCAGTCTGGGTGTGTGTA TATATTCTGAGGGTCTGAGGGTATTATACTCACGACACGTCTTGTTCGAT TGTGGAAACGTTGTGCTTCCCTACGTTCTTCCGAGTTCTAGGAAAGTTGG CACTTGGTGGCAGGAGTGTCTCCGTTGGCAGCATGTTGGAGAGATCGGAC AAATTCCAATGTCCTGCAGATGTGTCTGCACCATCTAACATGAGCTCTGA TTGGCCCGATGCACTGCGTGTCGCTGCAGGCTACCGCCGATCGACGGAGA AGGGAGAACCCGGCGGCTCAAGCACGAAGCTTCGGGGGTAGTGGCGGGCA AAGCGAGCAATGCCCGCAATGTGGCGCTAAATTTGGCGATATCGGATCGC TTGTAGCTCACGCAGAGGCCTTCCACTCCGAGGTGAGAGGGCAGTGTGGT TAAAGCGCCTTCTCGATGTTAGCAGACGATTAGCGCAAGCTTGGAGGCTT CGAGATGACGTACATACTTTCCGTGTTTGTTGAGGGCCGTTCCACCTGCA CCATGTCCTGCAATACTTTGCATAGCTCGTCTGTCTTGATCCAAGGACCA CGCTGTAGCGGTCTCCTTCCGCCGATAATCCCACGTGCTGCTTGGCGATC ATGTATTTTTTGTCGCTTGCAGGGTTATGTGCTCTACCGGACCACCACCG AACCGCAAGGGCAAGGAATTTCGTGGTTCCCCTGGCTGGCTGGTGTATTG CTAAGTTTTTGTTCTTCAAGAAGTGGTGATTCGGTCCCGCAGAGTTGTTC AACTCCACCCGCACCTCCTTCGCGGTCGCCTTCGTTTGTTTTTTAATTCC TAGGGGCAGCAGTTTCGAGCACACGGCGGTGGCGGCAGCGGAGGTAGCAG TAGCACAGGAGAGACTTGCCCAATCTGCAATCTCCATTTTTCTGACGTGG CGCTGCTGGTTTCACACGTGGAGGCGGTACACCCGGACGGTGCTCGGGGG GGTTCGACTTTGCAGGGCGCAACGTCCAGCGGGGCAAGCTCTTGCTCAAT ATGTTGACTGTCTCGCGCGCTGGTGGCTCTTGTGTTGTGGAGAGAGCCAG AGAAAATTCTGCACGAGACGCTTTTTCGAGACGTGTACGTTTTGCAGCAC ACGTGCAGATTCTGTTTCGTAGAAAAGAGTCTTGGCGACCAGAGTGTGGT GATCCTGTGCGCGCTTGTACGCGATTATTGCCGCGCACCGGCTAGTTCTT CGCATGGTGAGAAACGTTGCGGAGACCGAATCGTTCCGGGAGGGTAGGCT TTCATTCCCGATAGTTGAACGGACGGGGCGTTGCAGGCTGCCGTTGAAGG GTTCAACGGGAAAGCTGCTGTTCGTGTGTTCTCATTCTCACAAGTCGAAG GTACTAGCGGGAGTTTTGAAGGTTGTGTACCTCACGATGTGTTATACGAT AAAACGCTGAGCTACATTTCGATTTTCGAGTGCCGGAGGCCGGAATCGCT TTTTCGTGGGTTTCATGAGGGCATGATATGATGTGTGTCGGGGAAAGGCA GGCAGTGTTGTACGCGTGCGTTGCGCTCGCCCACCTCAGCGACACTTTCC AAGGCCTCGCGATCGGAATGCTTGCAAATAGTATGTGGAACACAGGTATT CAT
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Coding sequence (CDS) from alignment at Scaffold_246:480316..486218-

>EsuBft873_7a-0001 ID=EsuBft873_7a-0001|Name=EsuBft873_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=843bp|location=Sequence derived from alignment at Scaffold_246:480316..486218- (Ectocarpus subulatus male Bft15b)
ATGCGCACTTTCTGTCTATCGCACCGAAGCTACGCGGCTCACTCATGCGC
GGCATCTGGAAACAAGGACTTTCGAGCCCTGGTGTGTCCCCTTTGCAAGA
ACACAGTTCGCTTCAACGGGGGCCAGGACCCCAATCAGCAGTGGGATTTG
CACACGAGAACAGACTGCAACCCCGAGGACTACAAGAGGAACAAGCCGAC
GAAGAAGAGATGCGCAGCGGCGAGCTGTCGAGTGGTACTCGGACCAACCA
ACGCACAACGGTGTGCCAGCTGCTGCAAGGAGACGTGCTTGACACACAGG
TTCCCGGACAGTCATAACTGCAGCGCTTCCAGCCGTGGCGATGCGAGGGG
TCCCGCAGCGGCCGCTGCTGCTAGGCGAATGGCATCCCAGGCGAACCAAT
CGCGTCCGATGTCGCTGAGGGAAAAGGGAGCACAGAAGAGGGCCGCCGCA
TCGTCCCGCCGCGACGCTGACGCGAACACGGCTCGGGCTACCGCCGATCG
ACGGAGAAGGGAGAACCCGGCGGCTCAAGCACGAAGCTTCGGGGGTAGTG
GCGGGCAAAGCGAGCAATGCCCGCAATGTGGCGCTAAATTTGGCGATATC
GGATCGCTTGTAGCTCACGCAGAGGCCTTCCACTCCGAGGGGCAGCAGTT
TCGAGCACACGGCGGTGGCGGCAGCGGAGGTAGCAGTAGCACAGGAGAGA
CTTGCCCAATCTGCAATCTCCATTTTTCTGACGTGGCGCTGCTGGTTTCA
CACGTGGAGGCGGTACACCCGGACGGTGCTCGGGGGGGTTCGACTTTGCA
GGGCGCAACGTCCAGCGGGGCAAGCTCTTGCTCAATATGTTGA
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