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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D7FYN8 |
| ProteomeId | EsuBft873_7 |
| Protein domains | IPR007087 |
| Protein domains | IPR015880 |
| Protein domains | PTHR14677 |
| Protein domains | SignalP-TM |
| Protein domains | IPR000058 |
| Protein domains | SSF118310 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | zinc finger an1 and c2h2 domain-containing stress-associated protein 11 os:arabidopsis thaliana [Automatic annotation] |
| Nb exon | 7 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1454 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.72e-149 |
| EggNOG OGs | KOG3183@1|root,KOG3183@2759|Eukaryota |
| Ec32 ortholog description | AN1 and C2H2 zinc finger protein |
| Ec32 ortholog | Ec-17_000160.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| GOs | GO:0001101,GO:0008150,GO:0009719,GO:0009725,GO:0009737,GO:0010033,GO:0010200,GO:0010243,GO:0033993,GO:0042221,GO:0042493,GO:0050896,GO:0097305,GO:1901698,GO:1901700 |
| Description | zinc ion binding |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0044424 |
| GO | 0008270 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft873_7a-0001 ID=EsuBft873_7a-0001|Name=EsuBft873_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1454bp|location=Sequence derived from alignment at Scaffold_246:480316..486218- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATTGTGACATTTTCGATGCGCACTTTCTGTCTATCGCACCGAAGCTACGC GGCTCACTCATGCGCGGCATCTGGAAACAAGGACTTTCGAGCCCTGGTGT GTCCCCTTTGCAAGAACACAGTTCGCTTCAACGGGGGCCAGGACCCCAAT CAGCAGTGGGATTTGCACACGAGAACAGACTGCAACCCCGAGGACTACAA GAGGAACAAGCCGACGAAGAAGAGATGCGCAGCGGCGAGCTGTCGAGTGG TACTCGGACCAACCAACGCACAACGGTGTGCCAGCTGCTGCAAGGAGACG TGCTTGACACACAGGTTCCCGGACAGTCATAACTGCAGCGCTTCCAGCCG TGGCGATGCGAGGGGTCCCGCAGCGGCCGCTGCTGCTAGGCGAATGGCAT CCCAGGCGAACCAATCGCGTCCGATGTCGCTGAGGGAAAAGGGAGCACAG AAGAGGGCCGCCGCATCGTCCCGCCGCGACGCTGACGCGAACACGGCTCG GGCTACCGCCGATCGACGGAGAAGGGAGAACCCGGCGGCTCAAGCACGAA GCTTCGGGGGTAGTGGCGGGCAAAGCGAGCAATGCCCGCAATGTGGCGCT AAATTTGGCGATATCGGATCGCTTGTAGCTCACGCAGAGGCCTTCCACTC CGAGGGGCAGCAGTTTCGAGCACACGGCGGTGGCGGCAGCGGAGGTAGCA GTAGCACAGGAGAGACTTGCCCAATCTGCAATCTCCATTTTTCTGACGTG GCGCTGCTGGTTTCACACGTGGAGGCGGTACACCCGGACGGTGCTCGGGG GGGTTCGACTTTGCAGGGCGCAACGTCCAGCGGGGCAAGCTCTTGCTCAA TATGTTGACTGTCTCGCGCGCTGGTGGCTCTTGTGTTGTGGAGAGAGCCA GAGAAAATTCTGCACGAGACGCTTTTTCGAGACGTGTACGTTTTGCAGCA CACGTGCAGATTCTGTTTCGTAGAAAAGAGTCTTGGCGACCAGAGTGTGG TGATCCTGTGCGCGCTTGTACGCGATTATTGCCGCGCACCGGCTAGTTCT TCGCATGGTGAGAAACGTTGCGGAGACCGAATCGTTCCGGGAGGGTAGGC TTTCATTCCCGATAGTTGAACGGACGGGGCGTTGCAGGCTGCCGTTGAAG GGTTCAACGGGAAAGCTGCTGTTCGTGTGTTCTCATTCTCACAAGTCGAA GGTACTAGCGGGAGTTTTGAAGGTTGTGTACCTCACGATGTGTTATACGA TAAAACGCTGAGCTACATTTCGATTTTCGAGTGCCGGAGGCCGGAATCGC TTTTTCGTGGGTTTCATGAGGGCATGATATGATGTGTGTCGGGGAAAGGC AGGCAGTGTTGTACGCGTGCGTTGCGCTCGCCCACCTCAGCGACACTTTC CAAGGCCTCGCGATCGGAATGCTTGCAAATAGTATGTGGAACACAGGTAT TCAT back to topprotein sequence of EsuBft873_7a-0001 >EsuBft873_7 ID=EsuBft873_7|Name=EsuBft873_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=280bp
MRTFCLSHRSYAAHSCAASGNKDFRALVCPLCKNTVRFNGGQDPNQQWDL HTRTDCNPEDYKRNKPTKKRCAAASCRVVLGPTNAQRCASCCKETCLTHR FPDSHNCSASSRGDARGPAAAAAARRMASQANQSRPMSLREKGAQKRAAA SSRRDADANTARATADRRRRENPAAQARSFGGSGGQSEQCPQCGAKFGDI GSLVAHAEAFHSEGQQFRAHGGGGSGGSSSTGETCPICNLHFSDVALLVS HVEAVHPDGARGGSTLQGATSSGASSCSIC back to topmRNA from alignment at Scaffold_246:480316..486218- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft873_7a-0001 ID=EsuBft873_7a-0001|Name=EsuBft873_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5903bp|location=Sequence derived from alignment at Scaffold_246:480316..486218- (Ectocarpus subulatus male Bft15b) ATTGTGACATTTTCGATGCGTACTACCAATGAAGCAGTCGAAAGAGCGTG
TTTTCTCTTCCGAGTAGACAAAGATAGTGATGTTCGTCTCTTGTCCCCCC
TTGTTTGTCTTGAGTACCCTGCCACAGGCACTTTCTGTCTATCGCACCGA
AGCTACGCGGCTCACTCATGCGCGGCATCTGGAAACAAGGACTTTCGAGC
CCTGGTGTGTCCCCTTTGCAAGAACACAGTTCGCTTCAACGGGGGCCAGG
ACCCCAATCAGCAGTGAGTACAATACGCATCGTCACACGCAGTCCCTCGC
CCCCCCAGTCCCTCCGCACCACTCGGGGTTAATGTAGACCTGAGGGCCAC
AAAAGTGCTTATAACTGCCATGTTGTGGAATTGCGGTTGTGCTTAGTAGA
TGGAACCACCAGATGGTTGTTTGTCAAGCGTTTTTTTTTCCTTTCAAACA
TGGAGCGACGAGAGCAATTCGTGCTCTGTTTTTGTCGCGTGTGTGTGTGT
AAGACAAGGCAACGAAAGTGACTCGCACCGCTGCAGCGTAGACCGCGTTC
GTCGGTCCCAGAGCTGCTGCTTTGGCCGATCTCGTCTTTGACTTGCTACG
TGACGGCAAGCATTGCTTTCATAAGTGAAGGCCAAGCAAAGGATGATCGC
TCTGTACTTTACATGCATGGAGTGAATCATATTCCAGCCCGTGTTGCCAG
TTGGTTCTGCAGTGAGCGAACGACTCTGAAAATGGTGCCGACGCTGACGG
GCGGAACTCTGCTTCGGTACTGCGGAACCCGCTGTTCACGCGCTACTGCT
GTAGTTGCTTATCGGGGGCTGCTATTTGTGAGTTGTGGCGTTTTTGGCGC
TCGCTGGATTTTTGCTTTCCTTTCGTGCTTGCTCTGTGCCCCCTGTGCGT
GTTCTCTATTCTTTTTGGTTGTATTTCTTTTGGCGTTTTCACATCTGCTG
GTCTGCGGATTTGCTTTTCGGTGCTTGTTGATGTTTCATCGTCTGCCCTT
TGTTGTGCATTTGTGTTTTTCTGGATCCGAGCAGGTGGGATTTGCACACG
AGAACAGACTGCAACCCCGAGGACTACAAGAGGAACAAGCCGACGAAGAA
GAGGTGCGGCGGGAGGGGGGTGTGTATTCATAGTCGTGCATGCCGTAGTC
GTTAGACCACTGACCTCGCATCCCTACAAAGCTGGGACGGAGCACGCCGG
GTTCTCACCGGACCGGGCTCTCACATCACCAAGCGCGAAGCGCCATGAGA
TATTCGGCGAGTCGCATGAAGGGTGCGCTGCATCCTGCTAACGGTGTTCG
GCATCTTGTGCTTACTTCCTTGCGTACGGATGACAGCTGCGTGTGACTTA
TTTTATTTTCTGGTGCTTTTACTTCCAGAGACAGTTGTAAGCACTGTGTA
ACTGCCTTGAGGGTGCTTGACCATTTTAACACAACGTGGTGCGATCATCC
CCCTTGCGCGGAGTGAGGGATCTCCACCCCGCACAACATGATCTACTCGA
CCACCATCATGGTTACCGCCAAAAGAAAAAATCAGAGGTAAAAAAAAGAA
CCCGGTAACCTGGTTGCCGAGTTCACGAAGTGAGTTGGCTTGTTTTACAA
CGTCGTTGCCAAGCGACGAAAACCCAATCCCGATGGCAAACACCGAGGGG
GGGGCTTTTTTGACAACGTCATTGTCAAGCGAAGAAAACCCAATCCCGAT
GGCAAGCACCGGGGGGGGGGCGGCTTGTTTTACAACGTCGTTGCCAAGCG
ACGAAAACCCAATCCCGATGGCAAACACCGAGGGGGGGGCTTTTTTGACA
ACGTCATTGTCAAGCGAAGAAAACCCAATCCCGATGGCAAGCACCGGGGG
GGGGGCGGCTTGTTTTACAACGTCGTTGCCAAGCGACGAAAACCCAATCC
CGATGGCAAACACCGAGGGGGGGGCTTTTTTGACAACGTCATTGTCAAGC
GAAGAAAACCCAATCCCGATGGCAAGCACCGGGGGGGGGGCGGCTTGTTT
TACAACGTCGTTGCCAAGCGACGAAAACCCAATCCCGATGGCAAACACCG
AGGGGGGGGCTTTTTTGACAACGTCATTGTCAAGCGAAGAAAACCCAATC
CCGATGGCAAGCACCGGGGGGGGGGCGGCTTGTTTTACAACGTCGTTGCC
AAGCGACGAAAACCCAACCCCGATGGCAAACACTTGGGGGGGGAGAGGGG
TGTTATCTAACGTATTGGTGACCTAGCCGTGTGACGACGAACCATGCGTC
GCTTGCGCGACGGAGCACCGTCGTAGGCGCGCTCGACGTAACACACGATT
TCCTTCGCCTCGCAAGCCCTCCTGCCGCCGTTGTACGTACGCGACGAGTC
TCCATGTTTTGTTCGTCACATCGTTCCCTCAAATAGGAAGTTTGAGGTTC
GAGCATCCATTCCTGAGTCCATTGCCGCACCGTCTACGTTATCACGCTGC
TTGTCGGTGCGGCATCATGAGGATGATTGGTAACAACCTCCGCGGGTGAC
TACCATTTGCTTTTTCTGGTGAGAGTCGCTCCCGCCTTTGCGGCCTACGA
CATGGCGGTGCCCATCATGCCCATCACTTCCCGTATAACAGCTTCGTGTG
TGCTTCTGCCCATCACATCCCGCACTGTCCTTCGCACAACAGATGCGCAG
CGGCGAGCTGTCGAGTGGTACTCGGACCAACCAACGCACAACGGTGTGCC
AGCTGCTGCAAGGAGACGTGCTTGACACACAGGTTCCCGGACAGGTTCGT
CTTGCCTCCAAACGTCCTTGGGCACATTTCCTGATACGTCTGTGCGACGT
CTGTTGTTGAGAGCCAAGTAATCATGGCATGATGGAAAACCGAGTCACTG
ATCCCGTCTCACATGAAAGGGATAGGGACCACCTCCTGTCGAGGTAGCGT
TCGGGTTCTTAATACCCTACCGCTGCAACATGCCCAAATGCAGAGATTCT
GGTGACCGGTGTCACAAGCCGTATTGCGCGATTGTCGTGCTCAAACATCA
TCCTCTGACATCCACAATAGCACAATTATCACAACCCTACTCACGTCAAT
AGAACGAGTGTCTCGACCTCGAAACCAGGACGGCGACGGGCAGTTCGCGT
TATGTAACCGTTCTCCTTTGCTGTCACCGTCCATCTACATCCCAGTCATA
ACTGCAGCGCTTCCAGCCGTGGCGATGCGAGGGGTCCCGCAGCGGCCGCT
GCTGCTAGGCGAATGGCATCCCAGGCGAACCAATCGCGTCCGATGTCGCT
GAGGGAAAAGGGAGCACAGAAGAGGGCCGCCGCATCGTCCCGCCGCGACG
CTGACGCGAACACGGCTCGGGTGAGACCGACTTTGTTGTGTTGATGGGTG
GGTCCTCTGGGTCGCTGGTTGCTGTGTTGTCTTTTGTTTGGGTTTTGGTC
GGGGTATTCGGCAACTCACAACTCCTTGGCAATGGGGCACGCACGACACC
GCAAACAGCAGTGCGGGTGTGTGTATGTGTCACCCGGAGCACGGTTGCCA
CCACAGGGAGAGACCCAAGTAACCATCTTCGGTGCTCCAGGCTCGCATGA
CGTGGTTCGGGTGACGTGGGTTTGCGAGTTTTACAGCTTTCGCGGGGGCT
GCCGTCGACTTTCTGTTCGTCAATCTGTCTTTCACCGCTGGGGTCCGAAC
GGGATCGTGCTGACCTAGTACGGTGCGGTCTTGTCATGCTGCAGTACACC
AAGGTGAGTTGTGAGTTAATTCGTCACAGTCAGCGAGAAACGGCACCCGG
CAAATGGACAAGAGTGTAGTCGAGCACCCTCTGAAGTGTAACTGAAATGC
TCGGAAAGTGGTGTCCACAGAAGTTCCCGTAACCCCGTTGCAAACCACCC
GTGATCCTTCAGCGAAACGCTAAACCCTTGTGCGGGTGCTTGGCTGTGGC
GCGGGAAAACGTAAGTCCACCTGAGCCTATGCCCCCCGCGCCAATCCTCC
CCTAGCACGCTCTTGGGCGTGGTGGCAGTTTTCCAATCATTTCCAAGGCC
TGTGTAGAGTACTCCTTGGACTTGCTTGACGTTCTACGATAGTGAAATAC
GCTCTCACGCAAGCTTCTTGTATCAGTAGCCTTCGTCCTCCTAGGCTTTA
TTTTGCGTTGAGGGTGTGCAATGGCATCTGTTTCCGAAGTGGTAGCATGT
TCTGGTCTGGAGTTACCCGACCAACACCGTTCGTGAGAGTCGTTTCCGGC
AGCTTGCACGGAAAACATGCTAAAGAGCTGCAGGCATTAGGTAGCAAAGA
CGCAATTGATAGTTCTTTTGCAAGTCACACCTCCAGTCTGGGTGTGTGTA
TATATTCTGAGGGTCTGAGGGTATTATACTCACGACACGTCTTGTTCGAT
TGTGGAAACGTTGTGCTTCCCTACGTTCTTCCGAGTTCTAGGAAAGTTGG
CACTTGGTGGCAGGAGTGTCTCCGTTGGCAGCATGTTGGAGAGATCGGAC
AAATTCCAATGTCCTGCAGATGTGTCTGCACCATCTAACATGAGCTCTGA
TTGGCCCGATGCACTGCGTGTCGCTGCAGGCTACCGCCGATCGACGGAGA
AGGGAGAACCCGGCGGCTCAAGCACGAAGCTTCGGGGGTAGTGGCGGGCA
AAGCGAGCAATGCCCGCAATGTGGCGCTAAATTTGGCGATATCGGATCGC
TTGTAGCTCACGCAGAGGCCTTCCACTCCGAGGTGAGAGGGCAGTGTGGT
TAAAGCGCCTTCTCGATGTTAGCAGACGATTAGCGCAAGCTTGGAGGCTT
CGAGATGACGTACATACTTTCCGTGTTTGTTGAGGGCCGTTCCACCTGCA
CCATGTCCTGCAATACTTTGCATAGCTCGTCTGTCTTGATCCAAGGACCA
CGCTGTAGCGGTCTCCTTCCGCCGATAATCCCACGTGCTGCTTGGCGATC
ATGTATTTTTTGTCGCTTGCAGGGTTATGTGCTCTACCGGACCACCACCG
AACCGCAAGGGCAAGGAATTTCGTGGTTCCCCTGGCTGGCTGGTGTATTG
CTAAGTTTTTGTTCTTCAAGAAGTGGTGATTCGGTCCCGCAGAGTTGTTC
AACTCCACCCGCACCTCCTTCGCGGTCGCCTTCGTTTGTTTTTTAATTCC
TAGGGGCAGCAGTTTCGAGCACACGGCGGTGGCGGCAGCGGAGGTAGCAG
TAGCACAGGAGAGACTTGCCCAATCTGCAATCTCCATTTTTCTGACGTGG
CGCTGCTGGTTTCACACGTGGAGGCGGTACACCCGGACGGTGCTCGGGGG
GGTTCGACTTTGCAGGGCGCAACGTCCAGCGGGGCAAGCTCTTGCTCAAT
ATGTTGACTGTCTCGCGCGCTGGTGGCTCTTGTGTTGTGGAGAGAGCCAG
AGAAAATTCTGCACGAGACGCTTTTTCGAGACGTGTACGTTTTGCAGCAC
ACGTGCAGATTCTGTTTCGTAGAAAAGAGTCTTGGCGACCAGAGTGTGGT
GATCCTGTGCGCGCTTGTACGCGATTATTGCCGCGCACCGGCTAGTTCTT
CGCATGGTGAGAAACGTTGCGGAGACCGAATCGTTCCGGGAGGGTAGGCT
TTCATTCCCGATAGTTGAACGGACGGGGCGTTGCAGGCTGCCGTTGAAGG
GTTCAACGGGAAAGCTGCTGTTCGTGTGTTCTCATTCTCACAAGTCGAAG
GTACTAGCGGGAGTTTTGAAGGTTGTGTACCTCACGATGTGTTATACGAT
AAAACGCTGAGCTACATTTCGATTTTCGAGTGCCGGAGGCCGGAATCGCT
TTTTCGTGGGTTTCATGAGGGCATGATATGATGTGTGTCGGGGAAAGGCA
GGCAGTGTTGTACGCGTGCGTTGCGCTCGCCCACCTCAGCGACACTTTCC
AAGGCCTCGCGATCGGAATGCTTGCAAATAGTATGTGGAACACAGGTATT
CAT back to topCoding sequence (CDS) from alignment at Scaffold_246:480316..486218- >EsuBft873_7a-0001 ID=EsuBft873_7a-0001|Name=EsuBft873_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=843bp|location=Sequence derived from alignment at Scaffold_246:480316..486218- (Ectocarpus subulatus male Bft15b) ATGCGCACTTTCTGTCTATCGCACCGAAGCTACGCGGCTCACTCATGCGC GGCATCTGGAAACAAGGACTTTCGAGCCCTGGTGTGTCCCCTTTGCAAGA ACACAGTTCGCTTCAACGGGGGCCAGGACCCCAATCAGCAGTGGGATTTG CACACGAGAACAGACTGCAACCCCGAGGACTACAAGAGGAACAAGCCGAC GAAGAAGAGATGCGCAGCGGCGAGCTGTCGAGTGGTACTCGGACCAACCA ACGCACAACGGTGTGCCAGCTGCTGCAAGGAGACGTGCTTGACACACAGG TTCCCGGACAGTCATAACTGCAGCGCTTCCAGCCGTGGCGATGCGAGGGG TCCCGCAGCGGCCGCTGCTGCTAGGCGAATGGCATCCCAGGCGAACCAAT CGCGTCCGATGTCGCTGAGGGAAAAGGGAGCACAGAAGAGGGCCGCCGCA TCGTCCCGCCGCGACGCTGACGCGAACACGGCTCGGGCTACCGCCGATCG ACGGAGAAGGGAGAACCCGGCGGCTCAAGCACGAAGCTTCGGGGGTAGTG GCGGGCAAAGCGAGCAATGCCCGCAATGTGGCGCTAAATTTGGCGATATC GGATCGCTTGTAGCTCACGCAGAGGCCTTCCACTCCGAGGGGCAGCAGTT TCGAGCACACGGCGGTGGCGGCAGCGGAGGTAGCAGTAGCACAGGAGAGA CTTGCCCAATCTGCAATCTCCATTTTTCTGACGTGGCGCTGCTGGTTTCA CACGTGGAGGCGGTACACCCGGACGGTGCTCGGGGGGGTTCGACTTTGCA GGGCGCAACGTCCAGCGGGGCAAGCTCTTGCTCAATATGTTGA back to top
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