EsuBft873_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft873_5a-0001
Unique NameEsuBft873_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_246contigScaffold_246:497509..502510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LGS2
ProteomeIdEsuBft873_5
Protein domainsIPR029033
Protein domainsIPR027417
Protein domainsPTHR10606
Protein domainsIPR013079
Protein domainsCoil
Protein domainsIPR013078
Protein domainsIPR003094
Ownerapollo_admin@sb-roscoff.fr
Note6-phosphofructo-2-kinase 1 os:saccharomyces cerevisiae (strain atcc 204508 s288c) gn:pfk26 pe:1 sv:1 [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length2059
Hectar predicted targeting categoryother localisation
Evalue1.28e-202
EggNOG OGsCOG0406@1|root,KOG0234@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Description6phosphofructo2kinase
COG categoryG
Cross References
External references for this mRNA
DatabaseAccession
GO0005524
GO0006006
GO0046835
GO0044281
GO0003824
GO0006003
GO0006000
GO0005829
GO0016311
EC2.7.1.105
GO0003873
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft873_5aEsuBft873_5aEctocarpus subulatus male Bft15bgeneScaffold_246 497509..502510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft873_5a-0001EsuBft873_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_246 498524..502510 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft873_5a-0001-exonagat-exon-21199Ectocarpus subulatus male Bft15bexonScaffold_246 497509..498712 -
EsuBft873_5a-0001-exonagat-exon-21198Ectocarpus subulatus male Bft15bexonScaffold_246 499314..499529 -
EsuBft873_5a-0001-exonagat-exon-21197Ectocarpus subulatus male Bft15bexonScaffold_246 500056..500145 -
EsuBft873_5a-0001-exonagat-exon-21195Ectocarpus subulatus male Bft15bexonScaffold_246 500627..500782 -
EsuBft873_5a-0001-exonEsuBft873_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_246 501441..501605 -
EsuBft873_5a-0001-exonagat-exon-21196Ectocarpus subulatus male Bft15bexonScaffold_246 502283..502510 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft873_5a-0001-exonagat-three_prime_utr-22519Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_246 497509..498523 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft873_5a-0001-cdsEsuBft873_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_246 498524..498712 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft873_5a-0001 ID=EsuBft873_5a-0001|Name=EsuBft873_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2059bp|location=Sequence derived from alignment at Scaffold_246:497509..502510- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCATTTTTTTTTTTCACACCCGATTCCCAGACAGAAGCGGCCGCGC
CTACTGCCTGCCACTGTTCCTCCGTGTACTCAGTTCGAAGTTTGAAACAT
TGCGAACGTTCACCGGGGTGTTTTTTTTTCCCGTGGAGACTGACCTTTTT
TCGTTCGGTTTTCAGAACTACAAGCTCAAGCTGAAGAACGACGACTACAA
GAACCAAGACCCCGATGCCGCGCTCAGGGACTTCAAGCAGAGAGTGAAGG
CGTACGAGGCTGTGTACGAGACAATAGAGGACAACGAAGACATGGGGGAC
ATCCAGTACATCAAGCTCTACAACGTCGGGCAGAAGGTGGTGACGAGGAA
CTGCAAGGGCTACTTGCCGAGCCAGGTCGCCTTTTACCTGCAGAACATCC
ACATCGGACCGCGAAAGATCTGGCTGACCAGACCGGCGGAGAGCGTTCTC
CCAGACAGCGAATACGACGTCGGGGAGGGGGGCGAAGAGCTAACGGAGGA
GGGGAGGCGGTACAGCATGACCGTCGCCAAGTACCTTCAAGCGGAGCAGG
AAACCTCAAAAATCACGGGTCCAGGGGCGGAGATCCTCATCTTGGCGGGG
ACCCAGAAAGTCGACCGCGAGTCGATCGCTCACTTGCAGATGCTGTATCC
GGTCGCTACGACCCCCCTCCTGAACGAGATCCACGGGGGAGAGCTCTCCG
GCATGGACCGCGAGAGCTTCCGCAAGCAGTACCCCGAGATGTGGAAGCAG
AGGGAACAGGACAAGCTAGAGTTCAGGTTCCCGGGGGCCGGGGGAGAGTC
GTACCAGGACGTGATCCAGAGAGTGCGGCCAATCATCGTAGAACTCGAGC
GGCAGCCACGAAGCTTGGTGGTCGTGTGCCACCTGGCCGTGCAGCGGTGC
CTCCACGCCTACTTCATGGGCATCGAGGTGTCCAAGGTACCGTACATCGA
CCTGCCGACGCACGAGCTCACGGAGCTCATCCCGTCGCCGTTTGGCACGG
ACTGCCGACATATCACCCAGGTCGAGATGATGTCGCACTTCTAAATTTCT
TGCTATAGCTAGTAGTAGGCGGGACGCGACATCGATATGACGTCGCGCTT
CCCAGGAGCATGACGGGCGGAGGCGCGACCGCGGCGGCGGCGGCGGAAGA
CTTTTTTTTGTTTTTGCGACTATCATAGCTCGCTCGCTCGCTGCGTACCA
CGCCTCTTCTAAGCAGGATAGATTTGGTGGTACAGATGATGTTGTCGTGG
TGCCCAAGATCGGGTCGATATGTATGTATCGGCCGACACAGCAAAATCAT
CCATGGTCGGTCGGGTCTCCGCCCCCCCGCCCCCCGGCTACCCGCACCGG
CAAGCGAATCTGGGCGCGTGGAGTGGTTGTAGCAGCCTGCTACCTTAGTG
CTTCCTCACTGAGTCGCGTTGATTCCTCATGATGGTAGCAGGAGTGACGA
GGCTGACGGGATGCGTCGTTCGTTGGCTGCGCGGCATGCCCTCGCGGCCA
TGAGCCGCCCGTACGTGACGACCGATGGATCCGGTGCCGCTGCGTAGTTG
GTAGACGATGTCGCAGGCGAGTGAGTGAAACGGTTATTCTTTGGTCATCG
TCTTGCGGTTGCGAAGCATTTCCCACTGGTCTTGTCCGTAGTATAATATC
ATAGACTGGTAAGAACAACAGCGATACTTTGGTGCGGATCGGGGATTTGA
TCGTATTTTGTGCTCGGAAGCGTTCCAGGCATTCCGCAAGGCGGATTTTT
TTCTGACACTGCCACCGAAGTTTCAGCAGGGAATCTTCTCGGGTACAAGG
AAGAAGGCAGCAAGTGTGTCGTCAGGATTTTGGTAATATTTGCCGACAAA
GCAAACTCGGCTCGTTCGCGCTTAGGTTGTTATAATTGACTATTTTGCTT
GTTTTGCCGGGAACGCGCGGAATCGCTGGCCAGCTCGGGCATGGTGTTCA
TTCCCGTCCGGACGGATGGATGCGGTAACAGCGGCAAGCAGTTAGTGGAC
TGCCCATTCATATGTGTTTTTTTTTATTCTCGAGTGAATTTCGAGAGCTT
CCCCCGGAT
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protein sequence of EsuBft873_5a-0001

>EsuBft873_5 ID=EsuBft873_5|Name=EsuBft873_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=347bp
MPIFFFHTRFPDRSGRAYCLPLFLRVLSSKFETLRTFTGVFFFPVETDLF
SFGFQNYKLKLKNDDYKNQDPDAALRDFKQRVKAYEAVYETIEDNEDMGD
IQYIKLYNVGQKVVTRNCKGYLPSQVAFYLQNIHIGPRKIWLTRPAESVL
PDSEYDVGEGGEELTEEGRRYSMTVAKYLQAEQETSKITGPGAEILILAG
TQKVDRESIAHLQMLYPVATTPLLNEIHGGELSGMDRESFRKQYPEMWKQ
REQDKLEFRFPGAGGESYQDVIQRVRPIIVELERQPRSLVVVCHLAVQRC
LHAYFMGIEVSKVPYIDLPTHELTELIPSPFGTDCRHITQVEMMSHF
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mRNA from alignment at Scaffold_246:497509..502510-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft873_5a-0001 ID=EsuBft873_5a-0001|Name=EsuBft873_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5002bp|location=Sequence derived from alignment at Scaffold_246:497509..502510- (Ectocarpus subulatus male Bft15b)
ATGCCCATTTTTTTTTTTCACACCCGATTCCCAGACAGAAGCGGCCGCGC
CTACTGCCTGCCACTGTTCCTCCGTGTACTCAGTTCGAAGTTTGAAACAT
TGCGAACGTTCACCGGGGTGTTTTTTTTTCCCGTGGAGACTGACCTTTTT
TCGTTCGGTTTTCAGAACTACAAGCTCAAGCTGAAGAACGACGACTACAA
GAACCAAGACCCCGATGCCGCGCTCAGGGTAAGATTCGACCCTTTTTTTT
TTTTTTTTCAGCACCTTGGTCTTGCCACTTTTTTTTCTTGTTTCTCCCGT
TTTCTTTAGTTTGCTGTTGTTTACTTGAGGGTATGCAGTGTCCACGCCAG
GTCCCACAGTTTCGCCAGTATCTAGAAACGGCAAGTGGGCACAGCTCGAT
TTTGATGTTCGCTCCACCCTTTCAACGTCCTGAGCACCGCGTTGACGTGT
TTTTTGGCATTCAATTTTTCGAGGTTTGAGGATAGTGGCCGCCGCTTCAA
GCCTGTAGTGTCGCTTCTTGTCCCTGGGATATGGTACGTTCGTTGATAAT
GTCCTGGACACAACTAGCGGACGTGCATCGACTCCTCAGTTTCATAGGAT
AGTTCCCCATAAAACCAGAACACGTTGCGGTACGGGTAACCGCCAAGGTA
ACCATGTTAACGGGAAGAAAGGAGAAAATCGAAATACACCCGCGCACGCC
AGCCTTGTCCAATTTGCGGGTCCATTCGAAGGCGTCCATCGGCACCTCAG
TTTTCCAGAACAGTTCCTTACAACACAAGTTGCGGTACGGGTAACCGCCA
AGGTAGCCAATTTGACGTAGGGTGAGGAGGAGAAAATTGAAATCACCCAT
GCCACGCCGCCCTGCCGTTCCATTTTTCGGGTTGCATTCGCGTTCTTCTC
CGCAGGACTTCAAGCAGAGAGTGAAGGCGTACGAGGCTGTGTACGAGACA
ATAGAGGACAACGAAGACATGGGGGACATCCAGTACATCAAGCTCTACAA
CGTCGGGCAGAAGGTGGTGACGAGGAACTGCAAGGGCTACTTGCCGAGCC
AGGTCGCCTTTTACCTGCAGGTAGGCTGTTTGCAGTGGCAGCAGCAGCCA
TGGTGGTAACGTCCCAACAATCAATGTTATTGTTGTTGTTTTTGCTGCTG
CTGCTGCTGCTGTGTATTCGCGTTTTTACAGCGAGCGAATGAACATGCGG
GAATGGAGAAATATAGCATTTCGTCGTTGTCCGCACCGTTGCGGCAGGGT
GGATGACGTGTTGGAGAATAGCGGGTGTGCTGTGTTTATTTTGGTGGTCT
GAACAGATAAGGATCGGGAAAATACGATTATCCCGATTGACAAGGTTCCT
TGCAAACTTTGAGCCGGACATGAGCAAAGGCCGTTAGTGCCCCTGCCCCC
CACCCCGTATCCTCCCTTTCCCCCCTTTGTATATATATTTTTTCCTTAGC
AAAACACAGCAAATTTATCTCCTGCACAAGTACGAGTTCGTGATAGATTA
CAAGTACCTTGAATAAAAATACGTAAGAGGATTCATGTCCTAATTTGTTT
TTTGTTTTCATTTTGTTTGTAGGACAAAGATGCATATTTTGTTTTTGTTT
TCAGTTTGTTTCGTAGGACAAATATGCGCATATATTATTTTGTATTGTGT
TTTGTAGGACAAGTCATTAGTGTCCCTTTTTGTTCCTCGCTCGGGCTGCC
TGCCTTTCTCCGCCACCCCTTCATCCAGAACATCCACATCGGACCGCGAA
AGATCTGGCTGACCAGACCGGCGGAGAGCGTTCTCCCAGACAGCGAATAC
GACGTCGGGGAGGGGGGCGAAGAGCTAACGGAGGAGGGGAGGCGGTACAG
CATGACCGTCGCCAAGTACCTTCAAGCGGAGCAGGTGGGTGGTGTTTTCA
AGGTAGGGGCGTCGTCGTGCCTCGCGCGTTGGGGTGTGTTTTATGGGTCC
AGTACCGGCTGCTCTGTTGTGGTCGGCCGATCAGCGTCAGACTTACAGCT
GGAACAAGAACGTCTCCAAGCTGTGAATGTCTCTTTCTGATTAGCATCGA
CCGTGCTAACCGGCTGCCCAATGAAATGACGTCAGGCTCAGTGCGGTTGA
AAACACAATGTGCTTCTAAAGGCCATGAGCTGTGTGTGTGTGCGCGTTCT
TGTTTTTTGTGGTTCCAGCCCCTCACGTTGGTTCATTGACGCTGCCAACG
AACAGGCCAGTCGCAGCGGGAGAAATGGGCCAATGTTGCAGCGTAATCAC
ATTGATGTGTTTGATTGGTCTATCAAGTATCCAGCCTGATCTTGACCCCT
TATGTTTTGCCTAACACAAACAGTGACTTCCCACCCACCGCAATCTCGCG
GACGGTTTTTTCTAGGAAACCTCAAAAATCACGGGTCCAGGGGCGGAGAT
CCTCATCTTGGCGGGGACCCAGAAAGTCGACCGCGAGTCGATCGCTCACT
TGCAGGTACGTTGTCATTTCAATGGCGCCTCCTTCTCTCCAACAACTCGG
CGTCACGCCCGCAGGCCCATTCGAGCATGGCAGGAACACGTCGTGCCCGT
TCGCCTCCGTATCCACGTGCATCTGATGCTGTATCCACATGCGAATGCAC
GCGATCTCTGTTGTCTCTCTGCATGTTGATCACGCCTCGCACTCACTCGC
CTCCCATTCACATGTATCAGATGCTGCACCACATGCGGGTGCACGTGCTC
TCTCTGGGTATTGAAAACGCCTCGCACGCGCTCGCCTCCGTATCCAAATG
TGTATCAGATGCTGTGCCACATTCGATAAAAGGTTTTCTCCTCCGCTCTT
CATATTGAACACGCCTCGCATCAATTCGCCCACATCTCCACATGGTATCA
GATGCTGTACCACATGCAAGTTCACGTGTTTTCTCTAGATACTCAACACG
TGCCCACACGCATCACATGTTGTCCCACATGCGAATTCACGTCTTGTCCC
TGCATGCTGAATGCGTGTTCACGTGCATCAGATGCTGTATCCGGTCGCTA
CGACCCCCCTCCTGAACGAGATCCACGGGGGAGAGCTCTCCGGCATGGAC
CGCGAGAGCTTCCGCAAGCAGTACCCCGAGATGTGGAAGCAGAGGGAACA
GGACAAGCTAGAGTTCAGGTTCCCGGGGGCCGGGGGAGAGTCGTACCAGG
ACGTGATCCAGAGAGTGCGGCCAATCATCGTAGAACTCGAGCGGCAGGTG
CGAGGGTTTTTTCGTTTCTTCACTTTTGACACATACGTTCATGTCCTCAC
AGACAAATTATATAACACCCCTGTGTGCTTGTACTTTCGTGTTGTTGTTC
GTTCTGTTTACAATAGTGTTATTTTTATGACGAGTTGCGCGTGTTTTTGT
TGTGATCCTCGACGATGAAGCCGTTCCCCGTGCGGTCACTGGTGATGACG
GAATCGCGCCGAACGAGAATCGGCAGGGGATTGGACGGCGGAGTCGTTGC
GTACGCGGGAGGGGGGGGACTGGAACGACTGGAAGCCGACAGCAGGCAAT
GCCGGGCCCAAGGCCGATCATATTTACTGTCCGTTGTTTTCGGCAAGACT
TTCCCTGGGCTGTGCTTAGCATGGCTGCAGCGAGAGTCGGCCGAGAGTCC
ATGGACAACGATGTACTCGACCGACGCCCCGTCACATGCCGCGTGTGCCG
CATTCTGAAGAGGAGTGTCAGGGCAGCTCGCCCCACTCCGTGCGAATGTA
GGACAACGCTTGATTTCTGTCCTGCTTCCCCTTATCCTACGTGAGCTCAT
CAGCCAGCCCCCACCCCGTGCCCCCAAATTGCGTGTTGCCCCTGTCAGCC
ACGAAGCTTGGTGGTCGTGTGCCACCTGGCCGTGCAGCGGTGCCTCCACG
CCTACTTCATGGGCATCGAGGTGTCCAAGGTACCGTACATCGACCTGCCG
ACGCACGAGCTCACGGAGCTCATCCCGTCGCCGTTTGGCACGGACTGCCG
ACATATCACCCAGGTCGAGATGATGTCGCACTTCTAAATTTCTTGCTATA
GCTAGTAGTAGGCGGGACGCGACATCGATATGACGTCGCGCTTCCCAGGA
GCATGACGGGCGGAGGCGCGACCGCGGCGGCGGCGGCGGAAGACTTTTTT
TTGTTTTTGCGACTATCATAGCTCGCTCGCTCGCTGCGTACCACGCCTCT
TCTAAGCAGGATAGATTTGGTGGTACAGATGATGTTGTCGTGGTGCCCAA
GATCGGGTCGATATGTATGTATCGGCCGACACAGCAAAATCATCCATGGT
CGGTCGGGTCTCCGCCCCCCCGCCCCCCGGCTACCCGCACCGGCAAGCGA
ATCTGGGCGCGTGGAGTGGTTGTAGCAGCCTGCTACCTTAGTGCTTCCTC
ACTGAGTCGCGTTGATTCCTCATGATGGTAGCAGGAGTGACGAGGCTGAC
GGGATGCGTCGTTCGTTGGCTGCGCGGCATGCCCTCGCGGCCATGAGCCG
CCCGTACGTGACGACCGATGGATCCGGTGCCGCTGCGTAGTTGGTAGACG
ATGTCGCAGGCGAGTGAGTGAAACGGTTATTCTTTGGTCATCGTCTTGCG
GTTGCGAAGCATTTCCCACTGGTCTTGTCCGTAGTATAATATCATAGACT
GGTAAGAACAACAGCGATACTTTGGTGCGGATCGGGGATTTGATCGTATT
TTGTGCTCGGAAGCGTTCCAGGCATTCCGCAAGGCGGATTTTTTTCTGAC
ACTGCCACCGAAGTTTCAGCAGGGAATCTTCTCGGGTACAAGGAAGAAGG
CAGCAAGTGTGTCGTCAGGATTTTGGTAATATTTGCCGACAAAGCAAACT
CGGCTCGTTCGCGCTTAGGTTGTTATAATTGACTATTTTGCTTGTTTTGC
CGGGAACGCGCGGAATCGCTGGCCAGCTCGGGCATGGTGTTCATTCCCGT
CCGGACGGATGGATGCGGTAACAGCGGCAAGCAGTTAGTGGACTGCCCAT
TCATATGTGTTTTTTTTTATTCTCGAGTGAATTTCGAGAGCTTCCCCCGG
AT
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Coding sequence (CDS) from alignment at Scaffold_246:497509..502510-

>EsuBft873_5a-0001 ID=EsuBft873_5a-0001|Name=EsuBft873_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1044bp|location=Sequence derived from alignment at Scaffold_246:497509..502510- (Ectocarpus subulatus male Bft15b)
ATGCCCATTTTTTTTTTTCACACCCGATTCCCAGACAGAAGCGGCCGCGC
CTACTGCCTGCCACTGTTCCTCCGTGTACTCAGTTCGAAGTTTGAAACAT
TGCGAACGTTCACCGGGGTGTTTTTTTTTCCCGTGGAGACTGACCTTTTT
TCGTTCGGTTTTCAGAACTACAAGCTCAAGCTGAAGAACGACGACTACAA
GAACCAAGACCCCGATGCCGCGCTCAGGGACTTCAAGCAGAGAGTGAAGG
CGTACGAGGCTGTGTACGAGACAATAGAGGACAACGAAGACATGGGGGAC
ATCCAGTACATCAAGCTCTACAACGTCGGGCAGAAGGTGGTGACGAGGAA
CTGCAAGGGCTACTTGCCGAGCCAGGTCGCCTTTTACCTGCAGAACATCC
ACATCGGACCGCGAAAGATCTGGCTGACCAGACCGGCGGAGAGCGTTCTC
CCAGACAGCGAATACGACGTCGGGGAGGGGGGCGAAGAGCTAACGGAGGA
GGGGAGGCGGTACAGCATGACCGTCGCCAAGTACCTTCAAGCGGAGCAGG
AAACCTCAAAAATCACGGGTCCAGGGGCGGAGATCCTCATCTTGGCGGGG
ACCCAGAAAGTCGACCGCGAGTCGATCGCTCACTTGCAGATGCTGTATCC
GGTCGCTACGACCCCCCTCCTGAACGAGATCCACGGGGGAGAGCTCTCCG
GCATGGACCGCGAGAGCTTCCGCAAGCAGTACCCCGAGATGTGGAAGCAG
AGGGAACAGGACAAGCTAGAGTTCAGGTTCCCGGGGGCCGGGGGAGAGTC
GTACCAGGACGTGATCCAGAGAGTGCGGCCAATCATCGTAGAACTCGAGC
GGCAGCCACGAAGCTTGGTGGTCGTGTGCCACCTGGCCGTGCAGCGGTGC
CTCCACGCCTACTTCATGGGCATCGAGGTGTCCAAGGTACCGTACATCGA
CCTGCCGACGCACGAGCTCACGGAGCTCATCCCGTCGCCGTTTGGCACGG
ACTGCCGACATATCACCCAGGTCGAGATGATGTCGCACTTCTAA
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