EsuBft873_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft873_2a-0001
Unique Name	EsuBft873_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_246	contig	Scaffold_246:528085..530047 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7029.ACYPI22631-PA
ProteomeId	EsuBft873_2
Protein domains	SSF56672
Protein domains	G3DSA
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon 297 os:drosophila melanogaster gn:pol pe:3 s [Automatic annotation]
Nb exon	2
Max annot lvl	33208\|Metazoa
Length	1248
Hectar predicted targeting category	other localisation
Evalue	1.61e-49
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38F42@33154\|Opisthokonta,3BA5H@33208\|Metazoa,3CWAK@33213\|Bilateria,41WI3@6656\|Arthropoda,3SIRK@50557\|Insecta,3ECJT@33342\|Paraneoptera
Date last modified	2016-06-14
Date creation	2016-06-14
Description	K02A2.6-like
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft873_2a	EsuBft873_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_246 528085..530047 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft873_2a-0001-exon	agat-exon-21188	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 528085..529101 +
EsuBft873_2a-0001-exon	EsuBft873_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_246 529817..530047 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft873_2a-0001-cds	EsuBft873_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_246 528085..529101 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft873_2a-0001	EsuBft873_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_246 528085..530047 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_246:528085..530047+
coding sequence from alignment at Scaffold_246:528085..530047+

spliced messenger RNA

>EsuBft873_2a-0001 ID=EsuBft873_2a-0001|Name=EsuBft873_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1248bp|location=Sequence derived from alignment at Scaffold_246:528085..530047+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCAGGGCGCCAACGCAAGTCCGTCTTGGTTCGTCAAGGTCATCAA
CAGAGTGGTGCACGGTCTGGAGCGTGTGCTTGCTTATCTGGACGATGTCC
TCTGTTTCGATGAGGAACCTCTGGGACACGTGCTAAACTTGATCGAGTTC
TTCAAACGACTGCGACAGTACAACCTCAAACTTTCTCCAGGGAAGGCTCG
CGTCGGCGCCACGCACGCCAACTTTCTCGGTTACACCATCTCTCCGGCAG
GTGTTAGCCCTGATGGCGTTAAGGTTAGGGCGCTCACGCACATACCGCCG
CCGACGAACGTTAAGCAGCTTCGGAGCCTTCTCGGTGGACTCAGATACTA
CTGGAAATTCCTCAAGAATCTCACCACCAAGGTGCGGCCTCTCAACTCTC
TTCTCAAACAAGGCGTTCCCTTCAAGTACATGCCGGGCATGGTCAAGGTT
GTCAAAGCGTTGTTAAGCGAACGCGCTCGCCCCCCGATTTTGGTCTTCCC
GGATTGGGCAGCAATCGAGGACAACAGGCGTCCTCTTTGTTTGTGTTTCG
ACGCGTGTATCGACGGTTTTGGCGCCTCCTTGGAACAAGAACAGCTCGAT
GGCTCGGTGAGACCCATCGTGTACATCAGCCGCGCTTATCTTCCTGCGGA
GCGTAACTGGACCGTTTTGAATCTGGAGGCTGGTGGCATTGTTTGGGCCA
TCAAACGCCTTCGCGGATATCTGTGGTCGACCAAGTTCATCATCTATTCA
GACCACAAAGCCTTGGAGAGCATTGGCAAGGTTGTGGAACACAACGCTGG
GGTGCAACGATGGCTCGAATTCCTGTCCAACTTCCCCTACACCCTAAAAT
ATAGGAAAGGTCCGGCAAACGGCAACGCGGATTTTCTTTCGCGGTTGCCT
TTACCAGCACAAGACACTGACAAAACCGGCCCCGACTGCATTCATGGTGT
CGATCAAGCGGGTGTTTTCCTCATTTGGGCTTGCGGGCGCAACTTTCACT
CGTCACCTACACCGGAGGTCCCGCTCGACAAACAAGACCACCCGGACCGC
CGCGCGTCTGCTGCCGCCATCCGCAACGCCGGCATCGGCGTTTTCGTCGA
CTGCTCTCGCGCCACCGGTTTCTTCGCCGTCAGCGGCGCGCCCTGCATCC
CCGGCTTCGCCCTCTCTACAGGTTTCGCCAGGGACTTCGCCCCTCACGAT
GTCCCCTTCGCAGACATCACCACGGACTGCGGCTGCCCCAGTCGCTGA

protein sequence of EsuBft873_2a-0001

>EsuBft873_2 ID=EsuBft873_2|Name=EsuBft873_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=415bp
MPQGANASPSWFVKVINRVVHGLERVLAYLDDVLCFDEEPLGHVLNLIEF
FKRLRQYNLKLSPGKARVGATHANFLGYTISPAGVSPDGVKVRALTHIPP
PTNVKQLRSLLGGLRYYWKFLKNLTTKVRPLNSLLKQGVPFKYMPGMVKV
VKALLSERARPPILVFPDWAAIEDNRRPLCLCFDACIDGFGASLEQEQLD
GSVRPIVYISRAYLPAERNWTVLNLEAGGIVWAIKRLRGYLWSTKFIIYS
DHKALESIGKVVEHNAGVQRWLEFLSNFPYTLKYRKGPANGNADFLSRLP
LPAQDTDKTGPDCIHGVDQAGVFLIWACGRNFHSSPTPEVPLDKQDHPDR
RASAAAIRNAGIGVFVDCSRATGFFAVSGAPCIPGFALSTGFARDFAPHD
VPFADITTDCGCPSR

mRNA from alignment at Scaffold_246:528085..530047+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft873_2a-0001 ID=EsuBft873_2a-0001|Name=EsuBft873_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1963bp|location=Sequence derived from alignment at Scaffold_246:528085..530047+ (Ectocarpus subulatus male Bft15b)
ATGCCGCAGGGCGCCAACGCAAGTCCGTCTTGGTTCGTCAAGGTCATCAA
CAGAGTGGTGCACGGTCTGGAGCGTGTGCTTGCTTATCTGGACGATGTCC
TCTGTTTCGATGAGGAACCTCTGGGACACGTGCTAAACTTGATCGAGTTC
TTCAAACGACTGCGACAGTACAACCTCAAACTTTCTCCAGGGAAGGCTCG
CGTCGGCGCCACGCACGCCAACTTTCTCGGTTACACCATCTCTCCGGCAG
GTGTTAGCCCTGATGGCGTTAAGGTTAGGGCGCTCACGCACATACCGCCG
CCGACGAACGTTAAGCAGCTTCGGAGCCTTCTCGGTGGACTCAGATACTA
CTGGAAATTCCTCAAGAATCTCACCACCAAGGTGCGGCCTCTCAACTCTC
TTCTCAAACAAGGCGTTCCCTTCAAGTACATGCCGGGCATGGTCAAGGTT
GTCAAAGCGTTGTTAAGCGAACGCGCTCGCCCCCCGATTTTGGTCTTCCC
GGATTGGGCAGCAATCGAGGACAACAGGCGTCCTCTTTGTTTGTGTTTCG
ACGCGTGTATCGACGGTTTTGGCGCCTCCTTGGAACAAGAACAGCTCGAT
GGCTCGGTGAGACCCATCGTGTACATCAGCCGCGCTTATCTTCCTGCGGA
GCGTAACTGGACCGTTTTGAATCTGGAGGCTGGTGGCATTGTTTGGGCCA
TCAAACGCCTTCGCGGATATCTGTGGTCGACCAAGTTCATCATCTATTCA
GACCACAAAGCCTTGGAGAGCATTGGCAAGGTTGTGGAACACAACGCTGG
GGTGCAACGATGGCTCGAATTCCTGTCCAACTTCCCCTACACCCTAAAAT
ATAGGAAAGGTCCGGCAAACGGCAACGCGGATTTTCTTTCGCGGTTGCCT
TTACCAGCACAAGACACTGACAAAACCGGCCCCGACTGCATTCATGGTGT
CGATCAAGCGGGTGTTTTCCTCATTTGGGCTTGCGGGCGCAACTTTCACT
CGTCACCTACACCGGAGGTCGGTTTGGGTGGGCTCCGCCCTCCTTGCACG
GCGGGAGTCTTTTCGCCCCCAGCGTTGCAGCCCTCCGATTTTGGGGATTT
TCGCCGACATCACCCGCGTCGGTTGAATGCTCTGACGGACTCAACGATTG
CCTGCGAGAATTCTCGGCGGTCCCCGGGGGTCTTCGTCGTCTCGCCTGTT
CTCGCATCTTCAGGGCCTGCTTCCCCATTGACTTCTGATGCTTCCCGCGT
GATGTTTCCTGCCGCATCTTTGGCGACTAGATTTGTGCACGTTTTGTCTT
CGCTTCCGGAGCAGGGACCGCTCATTTCTTCGCGGACTCGGGCCAAAACT
ACCGCTGTTTCCGGAGGCACCGTCACCGGTCCCGCTTATTTCGGACGCCA
GCAGCGGGCTATCATTGTCCCTCGGACATCGTCGCCTGCCGTCGCTCTAG
CAGGTCCCGCTCGACAAGCAAGACCACCCGGGCCGCCGCGCGTCTGCTGC
CGCCATCCGCAACGCCGNCTTCCCGCGTGATGTTTCCTGCCGCATCTTTG
GCGACTAGATTTGTGCACGTTTTGTCTTCGCTTCCGGAGCAGGGACCGCT
CATTTCTTCACGGACTCGGGCCAAAACTACCGCTGTTTCCGGAGGCACCG
TCACCGGTCCCGCTTATTTCGGACGCCAGCCGCGGGCTACCATCGTCCCT
CGGACATCGTCGCCTGCCCGTCGCTCTAGCAGGTCCCGCTCGACAAACAA
GACCACCCGGACCGCCGCGCGTCTGCTGCCGCCATCCGCAACGCCGGCAT
CGGCGTTTTCGTCGACTGCTCTCGCGCCACCGGTTTCTTCGCCGTCAGCG
GCGCGCCCTGCATCCCCGGCTTCGCCCTCTCTACAGGTTTCGCCAGGGAC
TTCGCCCCTCACGATGTCCCCTTCGCAGACATCACCACGGACTGCGGCTG
CCCCAGTCGCTGA

Coding sequence (CDS) from alignment at Scaffold_246:528085..530047+

>EsuBft873_2a-0001 ID=EsuBft873_2a-0001|Name=EsuBft873_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1248bp|location=Sequence derived from alignment at Scaffold_246:528085..530047+ (Ectocarpus subulatus male Bft15b)
ATGCCGCAGGGCGCCAACGCAAGTCCGTCTTGGTTCGTCAAGGTCATCAA
CAGAGTGGTGCACGGTCTGGAGCGTGTGCTTGCTTATCTGGACGATGTCC
TCTGTTTCGATGAGGAACCTCTGGGACACGTGCTAAACTTGATCGAGTTC
TTCAAACGACTGCGACAGTACAACCTCAAACTTTCTCCAGGGAAGGCTCG
CGTCGGCGCCACGCACGCCAACTTTCTCGGTTACACCATCTCTCCGGCAG
GTGTTAGCCCTGATGGCGTTAAGGTTAGGGCGCTCACGCACATACCGCCG
CCGACGAACGTTAAGCAGCTTCGGAGCCTTCTCGGTGGACTCAGATACTA
CTGGAAATTCCTCAAGAATCTCACCACCAAGGTGCGGCCTCTCAACTCTC
TTCTCAAACAAGGCGTTCCCTTCAAGTACATGCCGGGCATGGTCAAGGTT
GTCAAAGCGTTGTTAAGCGAACGCGCTCGCCCCCCGATTTTGGTCTTCCC
GGATTGGGCAGCAATCGAGGACAACAGGCGTCCTCTTTGTTTGTGTTTCG
ACGCGTGTATCGACGGTTTTGGCGCCTCCTTGGAACAAGAACAGCTCGAT
GGCTCGGTGAGACCCATCGTGTACATCAGCCGCGCTTATCTTCCTGCGGA
GCGTAACTGGACCGTTTTGAATCTGGAGGCTGGTGGCATTGTTTGGGCCA
TCAAACGCCTTCGCGGATATCTGTGGTCGACCAAGTTCATCATCTATTCA
GACCACAAAGCCTTGGAGAGCATTGGCAAGGTTGTGGAACACAACGCTGG
GGTGCAACGATGGCTCGAATTCCTGTCCAACTTCCCCTACACCCTAAAAT
ATAGGAAAGGTCCGGCAAACGGCAACGCGGATTTTCTTTCGCGGTTGCCT
TTACCAGCACAAGACACTGACAAAACCGGCCCCGACTGCATTCATGGTGT
CGATCAAGCGGGTGTTTTCCTCATTTGGGCTTGCGGGCGCAACTTTCACT
CGTCACCTACACCGGAGGTCCCGCTCGACAAACAAGACCACCCGGACCGC
CGCGCGTCTGCTGCCGCCATCCGCAACGCCGGCATCGGCGTTTTCGTCGA
CTGCTCTCGCGCCACCGGTTTCTTCGCCGTCAGCGGCGCGCCCTGCATCC
CCGGCTTCGCCCTCTCTACAGGTTTCGCCAGGGACTTCGCCCCTCACGAT
GTCCCCTTCGCAGACATCACCACGGACTGCGGCTGCCCCAGTCGCTGA