EsuBft872_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft872_9a-0001
Unique NameEsuBft872_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_397contigScaffold_397:560261..565359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FR01
ProteomeIdEsuBft872_9
Protein domainsIPR009044
Protein domainsIPR003173
Protein domainsPTHR13215
Ownerapollo_admin@sb-roscoff.fr
Noteactivated rna polymerase ii transcriptional coactivator p15 os:gallus gallus gn:sub1 pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length654
Hectar predicted targeting categoryother localisation
Evalue3.59e-50
EggNOG OGsKOG2712@1|root,KOG2712@2759|Eukaryota
Ec32 ortholog descriptionssDNA-binding transcriptional regulator
Ec32 orthologEc-09_003070.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameSUB1
GOsGO:0000726,GO:0000981,GO:0001205,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003697,GO:0003700,GO:0003705,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006351,GO:0006352,GO:0006353,GO:0006355,GO:0006357,GO:0006359,GO:0006366,GO:0006369,GO:0006383,GO:0006384,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007329,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009371,GO:0009373,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010721,GO:0010948,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019236,GO:0019438,GO:0022603,GO:0022607,GO:0023052,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033554,GO:0034243,GO:0034306,GO:0034307,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0042173,GO:0042174,GO:0042221,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043618,GO:0043620,GO:0043900,GO:0043901,GO:0043933,GO:0043937,GO:0043939,GO:0043940,GO:0043942,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045786,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0045945,GO:0046019,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051445,GO:0051447,GO:0051716,GO:0051726,GO:0060255,GO:0060260,GO:0060261,GO:0060284,GO:0060395,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070887,GO:0070897,GO:0070898,GO:0071310,GO:0071444,GO:0071704,GO:0071824,GO:0071840,GO:0075297,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901522,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2000142,GO:2000144,GO:2000241,GO:2000242,GO:2001141
Descriptionpositive regulation of transcription initiation from RNA polymerase II promoter
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0005667
GO0031227
GO0006357
GO0003713
GO0005730
GO0070062
GO0003697
GO0005622
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft872_9aEsuBft872_9aEctocarpus subulatus male Bft15bgeneScaffold_397 560261..565359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft872_9a-0001EsuBft872_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_397 560365..565196 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft872_9a-0001-exonagat-exon-48610Ectocarpus subulatus male Bft15bexonScaffold_397 560261..560388 +
EsuBft872_9a-0001-exonEsuBft872_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_397 562632..562691 +
EsuBft872_9a-0001-exonagat-exon-48608Ectocarpus subulatus male Bft15bexonScaffold_397 563419..563529 +
EsuBft872_9a-0001-exonagat-exon-48609Ectocarpus subulatus male Bft15bexonScaffold_397 564189..564323 +
EsuBft872_9a-0001-exonagat-exon-48607Ectocarpus subulatus male Bft15bexonScaffold_397 565140..565359 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft872_9a-0001-exonagat-five_prime_utr-14577Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_397 560261..560364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft872_9a-0001-cdsEsuBft872_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_397 560365..560388 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft872_9a-0001-exonagat-three_prime_utr-22516Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_397 565197..565359 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft872_9a-0001 ID=EsuBft872_9a-0001|Name=EsuBft872_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=654bp|location=Sequence derived from alignment at Scaffold_397:560261..565359+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGCTGTTTTTCAAACCTCTGCTGTTCGCGCACGGCAGCACCCCCAAAGAG
GAGTCAGGAGAGATAGAGAGTAGAGAAAAGAAGAGCAAAGCCCACACGTA
AAGGATGCCGAAGCGCAAGGCTGACGAGGAGGGGTCCGGGGGAGAAGAAG
AGGAGAGGGCGGCCACCACCACCGACGACGGCGAGACTGGGAAGAAAAGT
TCCGCGGACACCGGTGCTGCAGCCGGTGGCAGCAGCGGCAGCAGCAGCAA
GAAAGCGAAGAAGCAGAGCGATGGCTCCGGCGTCAGCAACAAGATAGAGC
TCGGCAACAAGAAGTTCGTGGACGTGCGCGAGTTCAAGGGCAAGATTTAC
GTGGACATCCGTGAGTACTACGAGAAGGACGGGGAGATGAGGCCCGGCAA
GAAGGGGATCTCGCTTTCCACGGAACACTGGGAGGTGCTCAAAGAGAACA
TGGACGACATCAACGCCAAGGTGGAAGAGCTAAGCGGTTGACGAGCACAA
GTGGGAAGAAATGAAGAGGGGGGTATGCAGAGGGGAAAGGGGATTATCGG
GGTAGCGATGGGGTGGGGGGGGCTCCCTTTCGCTCTGCCGCATCAGGCGA
GCCCCTCCCGCCGCAGCCTCCCTCCTTGCAGTCCCCCCCCCCCCCCCCCC
CCCC
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protein sequence of EsuBft872_9a-0001

>EsuBft872_9 ID=EsuBft872_9|Name=EsuBft872_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=128bp
MPKRKADEEGSGGEEEERAATTTDDGETGKKSSADTGAAAGGSSGSSSKK
AKKQSDGSGVSNKIELGNKKFVDVREFKGKIYVDIREYYEKDGEMRPGKK
GISLSTEHWEVLKENMDDINAKVEELSG
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mRNA from alignment at Scaffold_397:560261..565359+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft872_9a-0001 ID=EsuBft872_9a-0001|Name=EsuBft872_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5099bp|location=Sequence derived from alignment at Scaffold_397:560261..565359+ (Ectocarpus subulatus male Bft15b)
CGCTGTTTTTCAAACCTCTGCTGTTCGCGCACGGCAGCACCCCCAAAGAG
GAGTCAGGAGAGATAGAGAGTAGAGAAAAGAAGAGCAAAGCCCACACGTA
AAGGATGCCGAAGCGCAAGGCTGACGAGGTGAGACTACACGGGAACTGCT
ATTGGCACACAACCAACACAACACCGATTTTTTCAAAATATGCCGACATA
CCAAAACGATCCTATTTCTCCATCTCCACACCTTTCCAAAATGCACAGAT
CAACACCAGATTTCAATAGCGCTCTCATAGACCATGCCCTCATGCTCTAG
AGAAGTGCTTATTTGAGCCTGGACGTAGCTGGAGTCTGAGAAATATTTCC
ACATGTACACAAGCACGGCGGGTTCTTTGCCAGGCCGTACTCTTTGAACG
CTTGTTTCTTTGGAAAGAGCGCCGATACACGTGACAATAGGTGGCGTCTT
GACCTTCAGCAAGTGCTCCCTCATGTCTTGAAGCGACGAACAGCAACACT
GTAAAACCAGACCTTCAATGGGCGCGTGAAAGAGAGAGAGGGTTCGCTGA
GAAGAAATGCTGCTGGTGCTTCGGTCCTGAGACATGTCTTTCGTTTTTGC
TTCGCAAGATACCACCCCTCTCCAAGCCATTCAAATTTACCCAAATCCCT
CCGCAACGATAACAAGTGTCGGCAGGGCAACGGGAGTTGAGACTGATTGC
TTCAGGAAGCCCCCCGTCTCAAGAGGTTTGTAAATGTAGCAACGACTGGA
TGTGCGTACATTGCGATCTGCGATAAGGCAAAGCAGCGATACTGAATCGT
GCAGGGGGTGCGAGGCGGATGTAGACATAAGAGCGAGCATAGGGAGAGAA
AGCATGGGGACCGCAAACTGCCACCATGCCCATGCGAACTCTTTGGATTC
ATACCCGTCATCCGAGGGGGGGGGGGGGGGGGGGGCCCCCCCCCCCCCCC
CCCTCNNNNNNNNNNNNNNNNNNGGGGGGGGGTATCACCGCACGTCCGTC
AATTCCTATCGCGGTAAATGCTCGATCGAGGAGGAGGAAAGCATAGTGGC
ATTGTCGCTTCTAGCGGAACGTTAGGCTTATTCCCATCACAAGAAAAAGT
AACGGAAAACGTTCCGAATCGGTCCTTTAAAAAAATGCAGGGAGGCATGT
CGACGATTTTTTTCGTGTTTCCGTGAAACGAGCAAGCAGGTTTCTTTTCG
TGCTTGCTCCATTAGCGGAAACGTGAAAAAATCCGAGACTTTGACTGACG
GACCGGGCAGGCGACCGCGGCCGCTATAATATAATAGCACCACTTAGAGT
GCTAGTAAGACTGCAAGACTTGTGTCCAGGCCTATTGCAAAGATGGAGAA
GCGGCAGAAGCCGCGTTCAGGTCGTCGTTTGTCCAAACCGAGTCATTGCG
TGGTGCTCTCGTCTTCAACTGCCGCTGTTGACGGGCGGGTATATCTTCCC
ACCCCACACGACAAACACGGACACAGTAGAGTGAGCACAGCAGCAGCGCC
GAGGCCTCCAACGCGCTGATTCCTTCGGTTCGGCTGTCTATGTAATACTC
ACTCCCGGCGCCGTGCTGCTTCGTGGGTATTGGGGGCTTGGGTGCTGTTC
AAGAAGGTGTGTGAGAGACGTGTGCCACATCACCAAACTCCCGTTCGAAA
AAATGCGGTGAGATGGCCTGTTTTTGGTCGGACACAGCCCAACAACCCCA
CCGCACCACGCAGCAGTGGAGCAATAGGGCCTCCGACACGCTGCTTCTTT
CGGATCGGTCATGTATATGATACTGGCTCTCAGCGCCGCCGCCGCTCTAT
GATTGTTAAGGTCGTCTACCTCTCGGCAGGGAGTGGTAAAAATAGGATGC
CACGCTCGGGTCACCATGGGGAAAATGAGCGGGAGGACTTAGAGAAATCG
CAAGCAACACCCAGTTTGCGACACTGCTCCCTGCCCCCTGTGCTGAAAAC
AGCAGGCCGGGTGGACAGGGTCTTTACAAGTGTGTTGTCCTCTGTGGCTG
TGTTCATTTTTGTGCTTGGACCGCCGCTCCATGGTGAGCAAAGTCGATTT
GACCTGTTGTGCGCCAAGCAAGGCGTGCATTCAGCGCCAAGAAACGTTTT
TTTCGGCGACATGATGATAAGAACAAGCAATAAACGCACCATTTTTTTGA
TTGACCGATCGGGGAATTATTGTCGCCGATTCGTGTTTTTGGGGGGGTCG
AAAGGAATGGGCCTTAGCCCATCCGTCCATGATGCAGCTCCGATACTTGT
CTGCGTTCGACGCACACAGCGAACACCGCCGCTCTGCTTCGTTTCACCTT
CGCTACAACTTCTTCTGTCATTGCAAAACGTTTGGATACTGCTGTTCGTA
AATTGATTCAACCCGCGAAAGGAGGGGTCCGGGGGAGAAGAAGAGGAGAG
GGCGGCCACCACCACCGACGACGGCGAGACTGTGAGAGATGAATGGCTGT
CGTCGTTCCTGTGCTGTTTTGTCTTGTTGGCGTCTGGTGCCTGTGCATGG
CCTCGTCCTGTCCTCCCGTGTCTTGTCATGCACGTATAGGTTCCGTTGGC
GCGGAACAACGCGCCAGGTGGTCGTCGTCGTGGTTGCTTTCGCTTTCTCG
CCCGTTTAGGCTGTGTTGATACAGAACAAAGCGCCAATTGATTGTCGGCG
TCGTTGTTGCTGTCACGTTCGCACCCGTTCCCACCTCTTGGGAGTACCTT
GTAGTAGCCGCACTGGTCCGACTGACCGGGACGCCTTCGGTGGTAGCAGA
CTGTCCGCCGTAAAAGGTTACACACGTGTGTGAAAAAAATTCGAAGATTT
AAGCGTGTGAGGGGTTGAGATTGCCTATTTGGGGTCATGGCTGAAAAGCA
AGCCATGATCACACCCTTCCCCCAGTCAAGCCTTGGTCTTTTATCCCTGC
TGTGGTGCCGACTTTAGTTTATGTTGGCACAAGCTTCGCCACTCGCCCGC
TGTAGTCTAGACAGGGACGTTGTCTCCATTATCATGAATGGTGACGACTG
GGTCACCAAGACCACCAGAGGGACAAAAAGTAACCACCTGTGTCGCCTGC
TTGATGCAACTTTGAAATCTGGCACTGCATGCCGGTGACCCCTCCCCCTC
CCCGGCTTGGTGCGCACATGGATGTATCCACTTGTTTTCAACTCACCAAA
CGCGGTAGGGGAAGAAAAGTTCCGCGGACACCGGTGCTGCAGCCGGTGGC
AGCAGCGGCAGCAGCAGCAAGAAAGCGAAGAAGCAGAGCGATGGCTCCGG
CGTCAGCAACAAGATAGAGGTGTGTAGGATTGGTCTGTTCTCGAGACGGT
TCGGGGTTGTTGACGGCCCGGGCTGTTACTGTTATTCTTTGTCTCGTCGG
AGGATCCTTTTTTTTTTTTCTTACAAAAAAATTGAATCTCCACCATCCGC
AGATATGGTGCTTTGTTTGTCTTTTGCTGCCAGAGCTTTGTCGTGCTCTT
CTGTCTCTCGCCACAAAGCTTCACTGATGCTCGTCAAACACTTGGCAAGC
CTACTTGCTCTTTATTTTTTCTCTGTGCTTCCCCCGCCCCCCCTCCTTCC
TGGCGCCAATGACGGTCCCAGTACCGAACATGCGCTGCGGTAGGTAGATG
ACATTTTGTAAATTGTCCACCCGTACCCTATCTGTCCCCGCCCTCTCTAT
TACGTTGATCACAATTTCTACCAGAACCCTTTCGTAAGTGCCGGATTTGA
AGCGCGCTCCTCCCTTGGACGATGTCACCGCTCGACCGGGGGATTTTCAT
TTCAACCTATCTATGCAGAAATTTCCTTTCAGTGTACAATGACCAGTCCA
AATACTTGGCACCTTTCCTCTTTTTTTTTTTTTCTGTTTCACGGAAGACT
CTTTCGGTTGTTGTGCCGAACGCTGAAAAATGTTTTTCTTCCTCTGGTGC
GCCGCGATTTGAAATATTTCTCCCAAAGCTCGGCAACAAGAAGTTCGTGG
ACGTGCGCGAGTTCAAGGGCAAGATTTACGTGGACATCCGTGAGTACTAC
GAGAAGGACGGGGAGATGAGGCCCGGCAAGAAGGGGATCTCGCTTTCCAC
GGAACACTGGGAGGTGGGCGAGATGTCAAAGACGCGTCGGCGTCGTCGAT
TTTTTGTTGCCAGTGTTGGTCTCTGTCGTTGTTGGCTGCATTGTTTGTCA
TGGATGCTCGTCGTCGTTGTCGCCATCGTCGGTTTTTGTTGCCGTTGTTG
TTTTCTGCCTTCGCTACAATGAATGTCGTCGTGAGTGTTGGGTGGTCTCC
TTGGCGTTAGAACGTGCCAGCAGTGTTACCCGTTCGCTATTCAATGTACC
GTGGTATACACAGGCGGTGTGCTGTGGCGTTGTTTTTATTATTATTAGTG
GTGCAAACAACGGTCAACATGCAGGTGTTGGTTGAATCATTCGAGATTGT
CCACTCCTTTCTTCGTGAATGTGAATGTTTCATTCAACTCCATGGGCTCG
TGCTGTTGAGGTACACCGGCACACACACCTACAGCAGCAGTGTGTTGTGT
CCCTCTACAAGACTGACGTATTTCCACTTTGGCCCGCCGGCGGGGACGGT
CGACGCGTCAGCTAAAGGAGCTCACGTGCACGCGATGACTACTAAAAACA
TGCTCGGGTCTTGTTGTACCGCTATCGACGGACGCCTTCTCATTGGCCGG
CTGGCTGAAGTCAACACACGGGTACAGGCACACCAACCTATGAGCACGCA
TGTGCACTGCTATCGGCCAGCATGCGGGTTAGAGCCCCCTCTTGTTTTCC
GAGCTGTTGGACGCTGGCATCGAAACAAGAAACAACGAATGACGTCGCAT
TTTGACTTTTGATGGTGGTGCGTGTCTTTCGTCTTGTTGTTTATTTTCTG
TTTATCGCGGCCGTCCATCCGCCCGTCAGGTGCTCAAAGAGAACATGGAC
GACATCAACGCCAAGGTGGAAGAGCTAAGCGGTTGACGAGCACAAGTGGG
AAGAAATGAAGAGGGGGGTATGCAGAGGGGAAAGGGGATTATCGGGGTAG
CGATGGGGTGGGGGGGGCTCCCTTTCGCTCTGCCGCATCAGGCGAGCCCC
TCCCGCCGCAGCCTCCCTCCTTGCAGTCCCCCCCCCCCCCCCCCCCCCC
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Coding sequence (CDS) from alignment at Scaffold_397:560261..565359+

>EsuBft872_9a-0001 ID=EsuBft872_9a-0001|Name=EsuBft872_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=387bp|location=Sequence derived from alignment at Scaffold_397:560261..565359+ (Ectocarpus subulatus male Bft15b)
ATGCCGAAGCGCAAGGCTGACGAGGAGGGGTCCGGGGGAGAAGAAGAGGA
GAGGGCGGCCACCACCACCGACGACGGCGAGACTGGGAAGAAAAGTTCCG
CGGACACCGGTGCTGCAGCCGGTGGCAGCAGCGGCAGCAGCAGCAAGAAA
GCGAAGAAGCAGAGCGATGGCTCCGGCGTCAGCAACAAGATAGAGCTCGG
CAACAAGAAGTTCGTGGACGTGCGCGAGTTCAAGGGCAAGATTTACGTGG
ACATCCGTGAGTACTACGAGAAGGACGGGGAGATGAGGCCCGGCAAGAAG
GGGATCTCGCTTTCCACGGAACACTGGGAGGTGCTCAAAGAGAACATGGA
CGACATCAACGCCAAGGTGGAAGAGCTAAGCGGTTGA
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