EsuBft872_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft872_4a-0001
Unique NameEsuBft872_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_397contigScaffold_397:530573..531192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft872_4
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length33
Hectar predicted targeting categorysignal anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft872_4aEsuBft872_4aEctocarpus subulatus male Bft15bgeneScaffold_397 530573..531192 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft872_4a-0001-exonagat-exon-48600Ectocarpus subulatus male Bft15bexonScaffold_397 530573..530708 -
EsuBft872_4a-0001-exonEsuBft872_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_397 530788..530805 -
EsuBft872_4a-0001-exonagat-exon-48599Ectocarpus subulatus male Bft15bexonScaffold_397 531014..531192 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft872_4a-0001-cdsEsuBft872_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_397 530573..530708 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft872_4a-0001-exonagat-five_prime_utr-14576Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_397 531088..531192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft872_4a-0001EsuBft872_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_397 530573..531087 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft872_4a-0001 ID=EsuBft872_4a-0001|Name=EsuBft872_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=333bp|location=Sequence derived from alignment at Scaffold_397:530573..531192- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCGAAAGGGGCGGTGTTGCCGCCGCACAGAAAGCGCTGACAGAAAAGGA
GCATGAGTTGGTCGAAAGTAAACAGCGCGAGGCGGCAAGCACCGCTGAGT
GCAGCATGGCTCAGGAGCTCGCGCGCGAGAGCACCGAGGCGCTAAAGGAG
GAGAAGGCTAAGAGAGCAGAGGCAGAGCGGTTGCGGACGGCGCTAGGGTG
TTTTTTGGTTCTGGCGGGGTTCTTCGGAGCGTTCGATGTGATTTTATTGG
CTCGAGCGATTTTCCATCTGGAAGATCCAGGACACTTTTCGAAATTTTTT
CCTATAGGAAATTTGACCGATTGGCACCCCTAA
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protein sequence of EsuBft872_4a-0001

>EsuBft872_4 ID=EsuBft872_4|Name=EsuBft872_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=75bp
MAQELARESTEALKEEKAKRAEAERLRTALGCFLVLAGFFGAFDVILLAR
AIFHLEDPGHFSKFFPIGNLTDWHP
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mRNA from alignment at Scaffold_397:530573..531192-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft872_4a-0001 ID=EsuBft872_4a-0001|Name=EsuBft872_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=620bp|location=Sequence derived from alignment at Scaffold_397:530573..531192- (Ectocarpus subulatus male Bft15b)
GTCGAAAGGGGCGGTGTTGCCGCCGCACAGAAAGCGCTGACAGAAAAGGA
GCATGAGTTGGTCGAAAGTAAACAGCGCGAGGCGGCAAGCACCGCTGAGT
GCAGCATGGCTCAGGAGCTCGCGCGCGAGAGCACCGAGGCGCTAAAGGAG
GAGAAGGCTAAGAGAGCAGAGGCAGAGCGGTCGCAGCAAGAGGCAGAGCG
GAGGAAGCAAGAGGCTGAACGAGACAAGGCGAAGGCGGAGGCGGTGGGCG
TAGATGATGGGTGCTTCCTCGCTGCTGCTGTTTTTTTCGCCAGCAGCAGG
AGGAGCACTGCTTCCTCCAGCAGGAGGAGTCCGCGCGGTCCCACCGCCCG
GCGGCTGTTCGAGTGAGCCACCAGGCATGTTTGCTAGGTTGCGGACGGCG
CTAGGGTGCCGCTAGGGTGCCGTGTGCAACCTCCACGGCACGGCGGAACG
CGTTCACACACGCTTCGCGCTCGCGGGGCGTCAGGTGTTTTTTGGTTCTG
GCGGGGTTCTTCGGAGCGTTCGATGTGATTTTATTGGCTCGAGCGATTTT
CCATCTGGAAGATCCAGGACACTTTTCGAAATTTTTTCCTATAGGAAATT
TGACCGATTGGCACCCCTAA
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Coding sequence (CDS) from alignment at Scaffold_397:530573..531192-

>EsuBft872_4a-0001 ID=EsuBft872_4a-0001|Name=EsuBft872_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=228bp|location=Sequence derived from alignment at Scaffold_397:530573..531192- (Ectocarpus subulatus male Bft15b)
ATGGCTCAGGAGCTCGCGCGCGAGAGCACCGAGGCGCTAAAGGAGGAGAA
GGCTAAGAGAGCAGAGGCAGAGCGGTTGCGGACGGCGCTAGGGTGTTTTT
TGGTTCTGGCGGGGTTCTTCGGAGCGTTCGATGTGATTTTATTGGCTCGA
GCGATTTTCCATCTGGAAGATCCAGGACACTTTTCGAAATTTTTTCCTAT
AGGAAATTTGACCGATTGGCACCCCTAA
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