EsuBft872_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft872_14a-0001
Unique Name	EsuBft872_14a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_397	contig	Scaffold_397:594181..594952 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft872_14
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	77
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft872_14a	EsuBft872_14a	Ectocarpus subulatus male Bft15b	gene	Scaffold_397 594181..594952 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft872_14a-0001-exon	EsuBft872_14a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_397 594181..594952 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft872_14a-0001-exon	agat-five_prime_utr-14568	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_397 594181..594295 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft872_14a-0001-cds	EsuBft872_14a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_397 594296..594799 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft872_14a-0001-exon	agat-three_prime_utr-22502	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_397 594800..594952 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft872_14a-0001	EsuBft872_14	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_397 594296..594799 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_397:594181..594952+
coding sequence from alignment at Scaffold_397:594181..594952+

spliced messenger RNA

>EsuBft872_14a-0001 ID=EsuBft872_14a-0001|Name=EsuBft872_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=772bp|location=Sequence derived from alignment at Scaffold_397:594181..594952+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AAGAGAAAATTGGCATATTCCTGAGATTTTCTCTTGAATCGAGCTGCTGG
AGGCCACGTCACGTAGCCATCACACACATCCCACAGCTCTCAACACAGAC
ACAGCTGCAGACACCATGCCCTGCGCAGCGGGCGACCGCTGCACTATGCC
CGACGAAACGCCAGGCCCGCCTCATTTCACAATACACAAATGCAGAGGTG
TCTGCCGGCAGTACCTCCATGGTATCTGTGGTGTGGTGGACCCGCTCGGC
ACCACTGAGGTGCACCGCATCTGCCACACCTGTGCGGCCTCCCGCGAGCG
CGAGACTTCAGGCGCGGGGACTGCTGGGTCGCAGCCAGAGAAGAGCGGCT
CTTCGGGGGCCAAAGACGTCGATCTGGTGGAGCAAGGCGAAGCGGGACAG
CAGTCGTTAGCGGCAGCGGCCTCGCCTCCGCCGCCGCACGCTAACGTAGC
ACAACACTTTTGTGAACTTGAGGACATTGCCGAGAAGTGCTACATGCCAA
AAGCGTCTTACCACCTCCGCAAGGCCAAGCTAGCTTGGATGAGTGCCCAC
GGGGCGGGGGCAACCAAGCAGACGTGTATCCAAGACTACTTTAAACGGTT
GCAGCAGACGCAGTGCTGAGGCTGACAGGCTTCGAGGGGTGCTTTGATTT
TCTGTGCCAAAATTGTTTTGTAGCGCGTGCGATATTTTCATACAGTACTA
CTGTACGTGATGTAGAGCGTGTTTCGTTTCATGACTCGTTTTTGGCACGA
AGGCTGTGGGTGATGTGTGTTC

protein sequence of EsuBft872_14a-0001

>EsuBft872_14 ID=EsuBft872_14|Name=EsuBft872_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=167bp
MPCAAGDRCTMPDETPGPPHFTIHKCRGVCRQYLHGICGVVDPLGTTEVH
RICHTCAASRERETSGAGTAGSQPEKSGSSGAKDVDLVEQGEAGQQSLAA
AASPPPPHANVAQHFCELEDIAEKCYMPKASYHLRKAKLAWMSAHGAGAT
KQTCIQDYFKRLQQTQC

mRNA from alignment at Scaffold_397:594181..594952+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft872_14a-0001 ID=EsuBft872_14a-0001|Name=EsuBft872_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=772bp|location=Sequence derived from alignment at Scaffold_397:594181..594952+ (Ectocarpus subulatus male Bft15b)
AAGAGAAAATTGGCATATTCCTGAGATTTTCTCTTGAATCGAGCTGCTGG
AGGCCACGTCACGTAGCCATCACACACATCCCACAGCTCTCAACACAGAC
ACAGCTGCAGACACCATGCCCTGCGCAGCGGGCGACCGCTGCACTATGCC
CGACGAAACGCCAGGCCCGCCTCATTTCACAATACACAAATGCAGAGGTG
TCTGCCGGCAGTACCTCCATGGTATCTGTGGTGTGGTGGACCCGCTCGGC
ACCACTGAGGTGCACCGCATCTGCCACACCTGTGCGGCCTCCCGCGAGCG
CGAGACTTCAGGCGCGGGGACTGCTGGGTCGCAGCCAGAGAAGAGCGGCT
CTTCGGGGGCCAAAGACGTCGATCTGGTGGAGCAAGGCGAAGCGGGACAG
CAGTCGTTAGCGGCAGCGGCCTCGCCTCCGCCGCCGCACGCTAACGTAGC
ACAACACTTTTGTGAACTTGAGGACATTGCCGAGAAGTGCTACATGCCAA
AAGCGTCTTACCACCTCCGCAAGGCCAAGCTAGCTTGGATGAGTGCCCAC
GGGGCGGGGGCAACCAAGCAGACGTGTATCCAAGACTACTTTAAACGGTT
GCAGCAGACGCAGTGCTGAGGCTGACAGGCTTCGAGGGGTGCTTTGATTT
TCTGTGCCAAAATTGTTTTGTAGCGCGTGCGATATTTTCATACAGTACTA
CTGTACGTGATGTAGAGCGTGTTTCGTTTCATGACTCGTTTTTGGCACGA
AGGCTGTGGGTGATGTGTGTTC

Coding sequence (CDS) from alignment at Scaffold_397:594181..594952+

>EsuBft872_14a-0001 ID=EsuBft872_14a-0001|Name=EsuBft872_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=504bp|location=Sequence derived from alignment at Scaffold_397:594181..594952+ (Ectocarpus subulatus male Bft15b)
ATGCCCTGCGCAGCGGGCGACCGCTGCACTATGCCCGACGAAACGCCAGG
CCCGCCTCATTTCACAATACACAAATGCAGAGGTGTCTGCCGGCAGTACC
TCCATGGTATCTGTGGTGTGGTGGACCCGCTCGGCACCACTGAGGTGCAC
CGCATCTGCCACACCTGTGCGGCCTCCCGCGAGCGCGAGACTTCAGGCGC
GGGGACTGCTGGGTCGCAGCCAGAGAAGAGCGGCTCTTCGGGGGCCAAAG
ACGTCGATCTGGTGGAGCAAGGCGAAGCGGGACAGCAGTCGTTAGCGGCA
GCGGCCTCGCCTCCGCCGCCGCACGCTAACGTAGCACAACACTTTTGTGA
ACTTGAGGACATTGCCGAGAAGTGCTACATGCCAAAAGCGTCTTACCACC
TCCGCAAGGCCAAGCTAGCTTGGATGAGTGCCCACGGGGCGGGGGCAACC
AAGCAGACGTGTATCCAAGACTACTTTAAACGGTTGCAGCAGACGCAGTG
CTGA