EsuBft871_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft871_9a-0001
Unique NameEsuBft871_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_576contigScaffold_576:88955..89576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft871_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length62
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft871_9aEsuBft871_9aEctocarpus subulatus male Bft15bgeneScaffold_576 88955..89576 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft871_9a-0001-exonEsuBft871_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_576 88955..89576 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft871_9a-0001-exonagat-three_prime_utr-22497Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_576 88955..88974 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft871_9a-0001-cdsEsuBft871_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_576 88975..89373 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft871_9a-0001-exonagat-five_prime_utr-14565Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_576 89374..89576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft871_9a-0001EsuBft871_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_576 88975..89373 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft871_9a-0001 ID=EsuBft871_9a-0001|Name=EsuBft871_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=622bp|location=Sequence derived from alignment at Scaffold_576:88955..89576- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCCGTGTTAAACGGACCGACTTTTTTGTCAAAATTTTCGACATTTGTCTT
TCAAAAACTTGGAACCTGTGTGCAGTCATTTTAAACGTGTGACGTGGACT
TGTGCAACTTGTGTAAAAAAAAATGACGCCGTCCGTGAGTTGTAGCGCTC
ACTTCTCGAGACAACACACACGACACAACACAAACCGCGGAAAACACGAC
ATCATGGACACCGACATGGATATCACGACCACCCAGCGTGGCCGGCAGAC
CAAAACCCCGGCGAAATTCCAGCAGACGGGCTCTCTCGGTGCCGCCGTAG
GCGGTGGAGGCTTGCTCTCCAGCAAGATAGTGCTGCTGCCTGGCATCTCG
GGGAACACTCATGTTACCACGGGAGGCGCTGCCGCCACCAACACTCAGAG
CGAGGGTGGAGCAGGCCGCCGGCGAGGGGTGGCAACCACTGCTCCTACCC
CCCCGGGAAAAGGAAAAAACAAAGCGGCGGACGCGAAGCAACAACTGCAA
GCCATCATGGCGGGCCGCCGTTTTTCGGACGACACAGCAACAACAGACAG
CATCGTCAACGTTGGCAACAGCGACGATAGCAATAGCGACAGCGACAGAT
GACTCACACACAACCCTAGCTG
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protein sequence of EsuBft871_9a-0001

>EsuBft871_9 ID=EsuBft871_9|Name=EsuBft871_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=132bp
MDTDMDITTTQRGRQTKTPAKFQQTGSLGAAVGGGGLLSSKIVLLPGISG
NTHVTTGGAAATNTQSEGGAGRRRGVATTAPTPPGKGKNKAADAKQQLQA
IMAGRRFSDDTATTDSIVNVGNSDDSNSDSDR
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mRNA from alignment at Scaffold_576:88955..89576-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft871_9a-0001 ID=EsuBft871_9a-0001|Name=EsuBft871_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=622bp|location=Sequence derived from alignment at Scaffold_576:88955..89576- (Ectocarpus subulatus male Bft15b)
GCCGTGTTAAACGGACCGACTTTTTTGTCAAAATTTTCGACATTTGTCTT
TCAAAAACTTGGAACCTGTGTGCAGTCATTTTAAACGTGTGACGTGGACT
TGTGCAACTTGTGTAAAAAAAAATGACGCCGTCCGTGAGTTGTAGCGCTC
ACTTCTCGAGACAACACACACGACACAACACAAACCGCGGAAAACACGAC
ATCATGGACACCGACATGGATATCACGACCACCCAGCGTGGCCGGCAGAC
CAAAACCCCGGCGAAATTCCAGCAGACGGGCTCTCTCGGTGCCGCCGTAG
GCGGTGGAGGCTTGCTCTCCAGCAAGATAGTGCTGCTGCCTGGCATCTCG
GGGAACACTCATGTTACCACGGGAGGCGCTGCCGCCACCAACACTCAGAG
CGAGGGTGGAGCAGGCCGCCGGCGAGGGGTGGCAACCACTGCTCCTACCC
CCCCGGGAAAAGGAAAAAACAAAGCGGCGGACGCGAAGCAACAACTGCAA
GCCATCATGGCGGGCCGCCGTTTTTCGGACGACACAGCAACAACAGACAG
CATCGTCAACGTTGGCAACAGCGACGATAGCAATAGCGACAGCGACAGAT
GACTCACACACAACCCTAGCTG
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Coding sequence (CDS) from alignment at Scaffold_576:88955..89576-

>EsuBft871_9a-0001 ID=EsuBft871_9a-0001|Name=EsuBft871_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=399bp|location=Sequence derived from alignment at Scaffold_576:88955..89576- (Ectocarpus subulatus male Bft15b)
ATGGACACCGACATGGATATCACGACCACCCAGCGTGGCCGGCAGACCAA
AACCCCGGCGAAATTCCAGCAGACGGGCTCTCTCGGTGCCGCCGTAGGCG
GTGGAGGCTTGCTCTCCAGCAAGATAGTGCTGCTGCCTGGCATCTCGGGG
AACACTCATGTTACCACGGGAGGCGCTGCCGCCACCAACACTCAGAGCGA
GGGTGGAGCAGGCCGCCGGCGAGGGGTGGCAACCACTGCTCCTACCCCCC
CGGGAAAAGGAAAAAACAAAGCGGCGGACGCGAAGCAACAACTGCAAGCC
ATCATGGCGGGCCGCCGTTTTTCGGACGACACAGCAACAACAGACAGCAT
CGTCAACGTTGGCAACAGCGACGATAGCAATAGCGACAGCGACAGATGA
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