EsuBft86_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft86_3a-0001
Unique NameEsuBft86_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_151contigScaffold_151:111809..114289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LU83
ProteomeIdEsuBft86_3
Protein domainsIPR018289
Protein domainsIPR007527
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length101
Hectar predicted targeting categoryother localisation
Evalue2.82e-198
EggNOG OGs2CMBY@1|root,2QPXR@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameFHY3
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007154,GO:0007165,GO:0007602,GO:0007623,GO:0008150,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009585,GO:0009605,GO:0009628,GO:0009639,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010017,GO:0010018,GO:0010218,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0023052,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042752,GO:0042753,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071490,GO:0080090,GO:0104004,GO:0140110,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
DescriptionMULE transposase domain
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0008270
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft86_3aEsuBft86_3aEctocarpus subulatus male Bft15bgeneScaffold_151 111809..114289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft86_3a-0001EsuBft86_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_151 111827..114266 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft86_3a-0001-exonagat-exon-36804Ectocarpus subulatus male Bft15bexonScaffold_151 111809..112484 -
EsuBft86_3a-0001-exonagat-exon-36806Ectocarpus subulatus male Bft15bexonScaffold_151 113156..113175 -
EsuBft86_3a-0001-exonagat-exon-36807Ectocarpus subulatus male Bft15bexonScaffold_151 113624..113752 -
EsuBft86_3a-0001-exonEsuBft86_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_151 113858..113977 -
EsuBft86_3a-0001-exonagat-exon-36805Ectocarpus subulatus male Bft15bexonScaffold_151 114216..114289 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft86_3a-0001-exonagat-three_prime_utr-22467Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_151 111809..111826 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft86_3a-0001-cdsEsuBft86_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_151 111827..112484 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft86_3a-0001-exonagat-five_prime_utr-14548Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_151 114267..114289 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft86_3a-0001 ID=EsuBft86_3a-0001|Name=EsuBft86_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1019bp|location=Sequence derived from alignment at Scaffold_151:111809..114289- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACGGCGGAGTGTGCGAGATAAAGATGGATGACAGCGGCCGCTTGACGCAC
ATCTGGTGGCAAACGAGAGAGCAGGTGGCGCTTTGGAATCGGTACGGTCA
CATTGCGCTCTACGACGACACCGCCGTCAAGAACAGATACCGGATGCCCC
TCGGTGTGCTCGCTGTCATCGGTTCGGAGTATCGGACGCGGATCGACGCG
GATGCGGCGATGACGGCGGCGGTGCGCGAGGTGTTCCCGGACGCGCTGGC
GAGGCGCTGTTTATGGCACCTCAACCAGAACATCATCAAGGCCCTCGCTA
AAGTCCTTGGTGGGGACATGAAGCCTTTCATGGACGAGTTCAGGGATAAG
TGCAACTCCCGCTCCTCGCTTTTGGACGTGGTGAAGTACTTTTCGGGCAT
CATCTGTTCCCAGAAGGATGCCGCCATGCTGCGAGACGCCATCGACCATC
TGCCGCCTAATCGGATGGTGGCTCCACCAGCGACCGCTTTCAAAAGTGTG
CTCGAGTCCTGCGAGTTCTCCATCGCGAGCTGGCCGCGGCGGTTCATGGA
GCAAGAGATGACCGCGGCCATCATGTTTTGCCAGATGGGTGGTGGGGAGG
TGGATGGACCAGAACGCGCGGCAGCTTTGGGGCACACGTTCGAGTACATC
GAGGGCAAGCTTTGCGACGTCATCTACGTCTTCGGTATTCACGAGCAGCG
TGATGGCAAGGGCTTCGACTACCTCGTCTTGCTCTTTTCCGACGGTAGCC
ATCTCTGCCAGTGCCTCACGCTCCAAACTCTCGGGCTATTTTGTCGCCAC
GTGTGGGCGGCGATGATGCACAGCCCCCGATTCACATTCCAAATAGGCCT
CCCNTTCAGATTCCACGTAGGCCTCCTGCACGAGCACTGGCTGACGGAAA
AGGCGAGGGGAACACCGCAGCAGGACTGGCCGGATGTCGCCCGCCCTCGA
TGGGTGGTATCCAACCGCCACGCTGCGGGAGAAGTAGACGGGGCGGCGTG
AGAGGAAGAGGGAGGGGGG
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protein sequence of EsuBft86_3a-0001

>EsuBft86_3 ID=EsuBft86_3|Name=EsuBft86_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=325bp
MDDSGRLTHIWWQTREQVALWNRYGHIALYDDTAVKNRYRMPLGVLAVIG
SEYRTRIDADAAMTAAVREVFPDALARRCLWHLNQNIIKALAKVLGGDMK
PFMDEFRDKCNSRSSLLDVVKYFSGIICSQKDAAMLRDAIDHLPPNRMVA
PPATAFKSVLESCEFSIASWPRRFMEQEMTAAIMFCQMGGGEVDGPERAA
ALGHTFEYIEGKLCDVIYVFGIHEQRDGKGFDYLVLLFSDGSHLCQCLTL
QTLGLFCRHVWAAMMHSPRFTFQIGLPFRFHVGLLHEHWLTEKARGTPQQ
DWPDVARPRWVVSNRHAAGEVDGAA
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mRNA from alignment at Scaffold_151:111809..114289-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft86_3a-0001 ID=EsuBft86_3a-0001|Name=EsuBft86_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2481bp|location=Sequence derived from alignment at Scaffold_151:111809..114289- (Ectocarpus subulatus male Bft15b)
ACGGCGGAGTGTGCGAGATAAAGATGGATGACAGCGGCCGCTTGACGCAC
ATCTGGTGGCAAACGAGAGAGCAGGTAGGCCGCCGGTCGTTGTGCCCCAT
ACGAATATTCCCCAGCCGGAAGGTTTGCTCTCATCTAGCATCTCGTACGT
ACCGCTTGGCCGTCCGCAAATGAAGGACGTTNCAAATGTAGGACGTCTGA
CCGAAAGCAGGCCGTAGGCAAGGGTGGGGGTGCGTTGTGACGCGTCCAAC
ACACGTCACACCCACAATTAAGTGCTCTCGACCCCCTTCGACGTCATGCT
CCGAATACGCAGGTGGCGCTTTGGAATCGGTACGGTCACATTGCGCTCTA
CGACGACACCGCCGTCAAGAACAGATACCGGATGCCCCTCGGTGTGCTCG
CTGTCATCGGTTCGGAGTATCGGACGCGGATCGTCGGCCAAAGCATAACG
GCGGACACCGCAACGGACACTTATCTGTGGATGTTGAAGATTGCGTTGGA
GTCTCGCGGGGGGAAGCAGCCGGATATCTTCATCTAGGACGCGGATGCGG
CGATGACGGCGGCGGTGCGCGAGGTGTTCCCGGACGCGCTGGCGAGGCGC
TGTTTATGGCACCTCAACCAGAACATCATCAAGGCCCTCGCTAAAGTCCT
TGGTGGGGACATGAAGGTGCGCTCTACTGTGTGTGTTGGCGTGGTTAGTC
TGGCCTCTCGTATTGTCCTGGTCGCGCGACGTACGCTGCCCACTCTAGCC
CCCCTCCCCCACTCCCGCTTGTATCCCCTGTGCGAGTTGGTGCGTTGTCA
TGGAGTCGTCTACTTGCAAGAGTGATATCCAGCGTCCCTGCGTAGACCGT
GATGCGGAGACGACCTCGGCTTCGACGGAAGCATACCTCACGACGTCCAG
TGCACACGGAAAAAGCAGCAGCAGCAGCAGCAGCAGGTTGTAAGCACCAA
TGGTTTGTCGCTGAGTTTTTCCAACCCTCTCCTCGTCTCGCCTTAGCGCT
AACGAAATGTACGGGGGTTGTTGGGGGCAGTCAATCGTACAGACCGGTAG
CTCATCGCCGAGGTCCCAACTCACGCAACACCCACCCGGCCTACGTCGTT
TGTGTTTTCCGCAGCCTTTCATGGACGAGTTCAGGTGTGTGCGTCAGCAG
CTGTCATTGGCGAAGTTCTAACGGAAGTTCAACGCCCTCATCGAAAAGCA
CCCGAAGGCGGAGAAGTACATGCGAGTGGTATATGACGACCGCGCACGGT
GGGCGGAATATGTGTCGCCCCTGGTGTTCTCCGTGAGTTCGTGGACGACA
TCAAGAGTTGAAGGTGCGTTTATGCGTCATCTGCCATGAGCGTTTTGTTC
GAGAATGACAGCGCATGTAGCGTTGTCGTTGTTTTTGGGAGTTTTTTTAC
GTCTGTAGGGGTTGGGGGCGGCTATCTTCCTTGCCCCCTATTTACTATGC
CATTGGTGAATGCTTCTTGACGAATTTATCGTACGCCGTCAGTCAGTGAA
TGACCAGTAAACAACTCCCTACATGCCGCTAACGTTTACGACCTCTTCGA
AACATATGGCTGTTGTCCGGCCCCTGGTGTTCGGGATTGATGTACTTGGT
CGGTGCACTGCGATCGTCCGGCTCACGTGTACATACATCTGTGGCGATGG
GTGCGTCAGGTCATAGGCTTCTCTTTCAGTCGTTTGGCGTACTGCGACTT
CGACGATGTCTGATGACACCAATCACTAACCCACGGTTTGGTTTGTGTGT
CGCTTCTTGCGTGTTTGTCCGCCGCACACACAACAGACCAAAACGCCCTC
ATCAGGGATAAGTGCAACTCCCGCTCCTCGCTTTTGGACGTGGTGAAGTA
CTTTTCGGGCATCATCTGTTCCCAGAAGGATGCCGCCATGCTGCGAGACG
CCATCGACCATCTGCCGCCTAATCGGATGGTGGCTCCACCAGCGACCGCT
TTCAAAAGTGTGCTCGAGTCCTGCGAGTTCTCCATCGCGAGCTGGCCGCG
GCGGTTCATGGAGCAAGAGATGACCGCGGCCATCATGTTTTGCCAGATGG
GTGGTGGGGAGGTGGATGGACCAGAACGCGCGGCAGCTTTGGGGCACACG
TTCGAGTACATCGAGGGCAAGCTTTGCGACGTCATCTACGTCTTCGGTAT
TCACGAGCAGCGTGATGGCAAGGGCTTCGACTACCTCGTCTTGCTCTTTT
CCGACGGTAGCCATCTCTGCCAGTGCCTCACGCTCCAAACTCTCGGGCTA
TTTTGTCGCCACGTGTGGGCGGCGATGATGCACAGCCCCCGATTCACATT
CCAAATAGGCCTCCCNTTCAGATTCCACGTAGGCCTCCTGCACGAGCACT
GGCTGACGGAAAAGGCGAGGGGAACACCGCAGCAGGACTGGCCGGATGTC
GCCCGCCCTCGATGGGTGGTATCCAACCGCCACGCTGCGGGAGAAGTAGA
CGGGGCGGCGTGAGAGGAAGAGGGAGGGGGG
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Coding sequence (CDS) from alignment at Scaffold_151:111809..114289-

>EsuBft86_3a-0001 ID=EsuBft86_3a-0001|Name=EsuBft86_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=978bp|location=Sequence derived from alignment at Scaffold_151:111809..114289- (Ectocarpus subulatus male Bft15b)
ATGGATGACAGCGGCCGCTTGACGCACATCTGGTGGCAAACGAGAGAGCA
GGTGGCGCTTTGGAATCGGTACGGTCACATTGCGCTCTACGACGACACCG
CCGTCAAGAACAGATACCGGATGCCCCTCGGTGTGCTCGCTGTCATCGGT
TCGGAGTATCGGACGCGGATCGACGCGGATGCGGCGATGACGGCGGCGGT
GCGCGAGGTGTTCCCGGACGCGCTGGCGAGGCGCTGTTTATGGCACCTCA
ACCAGAACATCATCAAGGCCCTCGCTAAAGTCCTTGGTGGGGACATGAAG
CCTTTCATGGACGAGTTCAGGGATAAGTGCAACTCCCGCTCCTCGCTTTT
GGACGTGGTGAAGTACTTTTCGGGCATCATCTGTTCCCAGAAGGATGCCG
CCATGCTGCGAGACGCCATCGACCATCTGCCGCCTAATCGGATGGTGGCT
CCACCAGCGACCGCTTTCAAAAGTGTGCTCGAGTCCTGCGAGTTCTCCAT
CGCGAGCTGGCCGCGGCGGTTCATGGAGCAAGAGATGACCGCGGCCATCA
TGTTTTGCCAGATGGGTGGTGGGGAGGTGGATGGACCAGAACGCGCGGCA
GCTTTGGGGCACACGTTCGAGTACATCGAGGGCAAGCTTTGCGACGTCAT
CTACGTCTTCGGTATTCACGAGCAGCGTGATGGCAAGGGCTTCGACTACC
TCGTCTTGCTCTTTTCCGACGGTAGCCATCTCTGCCAGTGCCTCACGCTC
CAAACTCTCGGGCTATTTTGTCGCCACGTGTGGGCGGCGATGATGCACAG
CCCCCGATTCACATTCCAAATAGGCCTCCCNTTCAGATTCCACGTAGGCC
TCCTGCACGAGCACTGGCTGACGGAAAAGGCGAGGGGAACACCGCAGCAG
GACTGGCCGGATGTCGCCCGCCCTCGATGGGTGGTATCCAACCGCCACGC
TGCGGGAGAAGTAGACGGGGCGGCGTGA
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