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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
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| Seed ortholog | 2880.D7FZZ3 |
| ProteomeId | EsuBft865_7 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 2759|Eukaryota |
| Length | 67 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 1.96e-19 |
| EggNOG OGs | KOG1339@1|root,KOG1339@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K01379,ko:K01382 |
| KEGG Pathway | ko04071,ko04140,ko04142,ko04210,ko04915,ko05152,map04071,map04140,map04142,map04210,map04915,map05152 |
| EC | 3.4.23.34,3.4.23.5 |
| Description | aspartic-type endopeptidase activity |
| COG category | M |
| BRITE | ko00000,ko00001,ko01000,ko01002,ko04147 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft865_7a-0001 ID=EsuBft865_7a-0001|Name=EsuBft865_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=673bp|location=Sequence derived from alignment at Scaffold_373:339218..339890+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CGAAACAAAGAAACAAAGCGGCGCGTCTGTTACTGTCGACGCGACGCTGC
ATGCAGTGCGGGACGTTACGGCGTTACCGCCCCGCTTCACTTGTACCTGG
CCTCTGGTCCCTTCCAAGCTGAGCGTCCAACAAGTTCGCGAGGAGCTGCT
TTAAAATCTAGCCGAGAGAGAGGTGTGTGTTTGTTTGTTCGGCCTGCTCT
TCCCTCGGGAAAGTTCCCGGAACGGAGGGTTAAGTAGACCCAACCGTGAT
CGGGCCTACCGCTGTAGCACACACACTAGGGAGCGTCACACCATGCCAGC
TCGACGTCCGCGACCACGGCCGCAATTACAAGAGTTTGTCGCGGTTGCTA
CTCTCCTGGGGTCGTTGGCACGATTCAGCCTGGCAGAGCGTGCACATGTG
CACCTCGTTGTCGCCGCGGGCGGCGAAACAGCATCGAAGCCATTGCTCGA
GGATGGCGACAAGATGGGCGACGCTGACAAGGGCGGGGGTGCGACGGCCC
AGCAGCAGCAGCAGCAGCAGCAGAGGTTGTTTGTCCCGCTCACGAGGCGG
GCCAGAGCGGGCGGTGCCGTGTACGGCGTGGATGTGCGCGATGAGGGTAT
CTCGCGTCGGAGACTTGAGCTTGACGGGGCTGGCGGGGCAACAGCAGGTG
AGTCGAGACAACCTGAGGACTAA back to topprotein sequence of EsuBft865_7a-0001 >EsuBft865_7 ID=EsuBft865_7|Name=EsuBft865_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=126bp
MPARRPRPRPQLQEFVAVATLLGSLARFSLAERAHVHLVVAAGGETASKP
LLEDGDKMGDADKGGGATAQQQQQQQQRLFVPLTRRARAGGAVYGVDVRD
EGISRRRLELDGAGGATAGESRQPED back to topmRNA from alignment at Scaffold_373:339218..339890+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft865_7a-0001 ID=EsuBft865_7a-0001|Name=EsuBft865_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=673bp|location=Sequence derived from alignment at Scaffold_373:339218..339890+ (Ectocarpus subulatus male Bft15b)
CGAAACAAAGAAACAAAGCGGCGCGTCTGTTACTGTCGACGCGACGCTGC
ATGCAGTGCGGGACGTTACGGCGTTACCGCCCCGCTTCACTTGTACCTGG
CCTCTGGTCCCTTCCAAGCTGAGCGTCCAACAAGTTCGCGAGGAGCTGCT
TTAAAATCTAGCCGAGAGAGAGGTGTGTGTTTGTTTGTTCGGCCTGCTCT
TCCCTCGGGAAAGTTCCCGGAACGGAGGGTTAAGTAGACCCAACCGTGAT
CGGGCCTACCGCTGTAGCACACACACTAGGGAGCGTCACACCATGCCAGC
TCGACGTCCGCGACCACGGCCGCAATTACAAGAGTTTGTCGCGGTTGCTA
CTCTCCTGGGGTCGTTGGCACGATTCAGCCTGGCAGAGCGTGCACATGTG
CACCTCGTTGTCGCCGCGGGCGGCGAAACAGCATCGAAGCCATTGCTCGA
GGATGGCGACAAGATGGGCGACGCTGACAAGGGCGGGGGTGCGACGGCCC
AGCAGCAGCAGCAGCAGCAGCAGAGGTTGTTTGTCCCGCTCACGAGGCGG
GCCAGAGCGGGCGGTGCCGTGTACGGCGTGGATGTGCGCGATGAGGGTAT
CTCGCGTCGGAGACTTGAGCTTGACGGGGCTGGCGGGGCAACAGCAGGTG
AGTCGAGACAACCTGAGGACTAA back to topCoding sequence (CDS) from alignment at Scaffold_373:339218..339890+ >EsuBft865_7a-0001 ID=EsuBft865_7a-0001|Name=EsuBft865_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=381bp|location=Sequence derived from alignment at Scaffold_373:339218..339890+ (Ectocarpus subulatus male Bft15b)
ATGCCAGCTCGACGTCCGCGACCACGGCCGCAATTACAAGAGTTTGTCGC
GGTTGCTACTCTCCTGGGGTCGTTGGCACGATTCAGCCTGGCAGAGCGTG
CACATGTGCACCTCGTTGTCGCCGCGGGCGGCGAAACAGCATCGAAGCCA
TTGCTCGAGGATGGCGACAAGATGGGCGACGCTGACAAGGGCGGGGGTGC
GACGGCCCAGCAGCAGCAGCAGCAGCAGCAGAGGTTGTTTGTCCCGCTCA
CGAGGCGGGCCAGAGCGGGCGGTGCCGTGTACGGCGTGGATGTGCGCGAT
GAGGGTATCTCGCGTCGGAGACTTGAGCTTGACGGGGCTGGCGGGGCAAC
AGCAGGTGAGTCGAGACAACCTGAGGACTAA back to top
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