EsuBft865_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft865_7a-0001
Unique NameEsuBft865_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_373contigScaffold_373:339218..339890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FZZ3
ProteomeIdEsuBft865_7
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length67
Hectar predicted targeting categorysignal peptide
Evalue1.96e-19
EggNOG OGsKOG1339@1|root,KOG1339@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K01379,ko:K01382
KEGG Pathwayko04071,ko04140,ko04142,ko04210,ko04915,ko05152,map04071,map04140,map04142,map04210,map04915,map05152
EC3.4.23.34,3.4.23.5
Descriptionaspartic-type endopeptidase activity
COG categoryM
BRITEko00000,ko00001,ko01000,ko01002,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft865_7aEsuBft865_7aEctocarpus subulatus male Bft15bgeneScaffold_373 339218..339890 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft865_7a-0001-exonEsuBft865_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_373 339218..339890 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft865_7a-0001-exonagat-five_prime_utr-14505Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_373 339218..339509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft865_7a-0001-cdsEsuBft865_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_373 339510..339890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft865_7a-0001EsuBft865_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_373 339510..339890 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft865_7a-0001 ID=EsuBft865_7a-0001|Name=EsuBft865_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=673bp|location=Sequence derived from alignment at Scaffold_373:339218..339890+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGAAACAAAGAAACAAAGCGGCGCGTCTGTTACTGTCGACGCGACGCTGC
ATGCAGTGCGGGACGTTACGGCGTTACCGCCCCGCTTCACTTGTACCTGG
CCTCTGGTCCCTTCCAAGCTGAGCGTCCAACAAGTTCGCGAGGAGCTGCT
TTAAAATCTAGCCGAGAGAGAGGTGTGTGTTTGTTTGTTCGGCCTGCTCT
TCCCTCGGGAAAGTTCCCGGAACGGAGGGTTAAGTAGACCCAACCGTGAT
CGGGCCTACCGCTGTAGCACACACACTAGGGAGCGTCACACCATGCCAGC
TCGACGTCCGCGACCACGGCCGCAATTACAAGAGTTTGTCGCGGTTGCTA
CTCTCCTGGGGTCGTTGGCACGATTCAGCCTGGCAGAGCGTGCACATGTG
CACCTCGTTGTCGCCGCGGGCGGCGAAACAGCATCGAAGCCATTGCTCGA
GGATGGCGACAAGATGGGCGACGCTGACAAGGGCGGGGGTGCGACGGCCC
AGCAGCAGCAGCAGCAGCAGCAGAGGTTGTTTGTCCCGCTCACGAGGCGG
GCCAGAGCGGGCGGTGCCGTGTACGGCGTGGATGTGCGCGATGAGGGTAT
CTCGCGTCGGAGACTTGAGCTTGACGGGGCTGGCGGGGCAACAGCAGGTG
AGTCGAGACAACCTGAGGACTAA
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protein sequence of EsuBft865_7a-0001

>EsuBft865_7 ID=EsuBft865_7|Name=EsuBft865_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=126bp
MPARRPRPRPQLQEFVAVATLLGSLARFSLAERAHVHLVVAAGGETASKP
LLEDGDKMGDADKGGGATAQQQQQQQQRLFVPLTRRARAGGAVYGVDVRD
EGISRRRLELDGAGGATAGESRQPED
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mRNA from alignment at Scaffold_373:339218..339890+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft865_7a-0001 ID=EsuBft865_7a-0001|Name=EsuBft865_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=673bp|location=Sequence derived from alignment at Scaffold_373:339218..339890+ (Ectocarpus subulatus male Bft15b)
CGAAACAAAGAAACAAAGCGGCGCGTCTGTTACTGTCGACGCGACGCTGC
ATGCAGTGCGGGACGTTACGGCGTTACCGCCCCGCTTCACTTGTACCTGG
CCTCTGGTCCCTTCCAAGCTGAGCGTCCAACAAGTTCGCGAGGAGCTGCT
TTAAAATCTAGCCGAGAGAGAGGTGTGTGTTTGTTTGTTCGGCCTGCTCT
TCCCTCGGGAAAGTTCCCGGAACGGAGGGTTAAGTAGACCCAACCGTGAT
CGGGCCTACCGCTGTAGCACACACACTAGGGAGCGTCACACCATGCCAGC
TCGACGTCCGCGACCACGGCCGCAATTACAAGAGTTTGTCGCGGTTGCTA
CTCTCCTGGGGTCGTTGGCACGATTCAGCCTGGCAGAGCGTGCACATGTG
CACCTCGTTGTCGCCGCGGGCGGCGAAACAGCATCGAAGCCATTGCTCGA
GGATGGCGACAAGATGGGCGACGCTGACAAGGGCGGGGGTGCGACGGCCC
AGCAGCAGCAGCAGCAGCAGCAGAGGTTGTTTGTCCCGCTCACGAGGCGG
GCCAGAGCGGGCGGTGCCGTGTACGGCGTGGATGTGCGCGATGAGGGTAT
CTCGCGTCGGAGACTTGAGCTTGACGGGGCTGGCGGGGCAACAGCAGGTG
AGTCGAGACAACCTGAGGACTAA
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Coding sequence (CDS) from alignment at Scaffold_373:339218..339890+

>EsuBft865_7a-0001 ID=EsuBft865_7a-0001|Name=EsuBft865_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=381bp|location=Sequence derived from alignment at Scaffold_373:339218..339890+ (Ectocarpus subulatus male Bft15b)
ATGCCAGCTCGACGTCCGCGACCACGGCCGCAATTACAAGAGTTTGTCGC
GGTTGCTACTCTCCTGGGGTCGTTGGCACGATTCAGCCTGGCAGAGCGTG
CACATGTGCACCTCGTTGTCGCCGCGGGCGGCGAAACAGCATCGAAGCCA
TTGCTCGAGGATGGCGACAAGATGGGCGACGCTGACAAGGGCGGGGGTGC
GACGGCCCAGCAGCAGCAGCAGCAGCAGCAGAGGTTGTTTGTCCCGCTCA
CGAGGCGGGCCAGAGCGGGCGGTGCCGTGTACGGCGTGGATGTGCGCGAT
GAGGGTATCTCGCGTCGGAGACTTGAGCTTGACGGGGCTGGCGGGGCAAC
AGCAGGTGAGTCGAGACAACCTGAGGACTAA
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