EsuBft864_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft864_7a-0001
Unique Name	EsuBft864_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_340	contig	Scaffold_340:2668..4512 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6500.XP_005092035.1
ProteomeId	EsuBft864_7
Protein domains	PTHR19446
Protein domains	SSF56672
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	line-1 retrotransposable element orf2 protein os:homo sapiens pe:1 sv:1 [Automatic annotation]
Nb exon	2
Max annot lvl	33208\|Metazoa
Length	1785
Evalue	1.21e-37
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BI15@33208\|Metazoa,3D94V@33213\|Bilateria
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Ribonuclease H protein
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0006259
EC	3.1
GO	0004518
GO	0016740

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft864_7a	EsuBft864_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_340 2668..4512 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft864_7a-0001-exon	agat-exon-99514	Ectocarpus subulatus male Bft15b	exon	Scaffold_340 2668..3099 +
EsuBft864_7a-0001-exon	EsuBft864_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_340 3160..4512 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft864_7a-0001-cds	EsuBft864_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_340 2668..3099 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft864_7a-0001-exon	agat-three_prime_utr-22389	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_340 4060..4512 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft864_7a-0001	EsuBft864_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_340 2668..4059 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_340:2668..4512+
coding sequence from alignment at Scaffold_340:2668..4512+

spliced messenger RNA

>EsuBft864_7a-0001 ID=EsuBft864_7a-0001|Name=EsuBft864_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1785bp|location=Sequence derived from alignment at Scaffold_340:2668..4512+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTGTGGCAGACTGGGGACGTACCACAGCAGTGGAAGGATGCCAC
CATCAAAGTGCTTTTCAAGAAGGGGGACACGATGGAGTGCGGCAACTACC
GGGGCATCTCTCTCGTTGCACACGCCGGCAAGGTGCTGCTAAAGGTCGTC
GCAACACGACTGAGCCACTTCTGCGAGCGAGAGGGCGTCCTCCCGGAGGA
GCAGAGCGGTTTCCGCCCACACCGGTCGACGCTCGACATGCTGTTCGCCA
TTCAGCGGCTCCATGAGCTCGCGAGGAAGAAGAGTACTGCGGTGTTCGCG
TGCTTCGTCGACCTCACCAAGGCATACGATTCGGTGGACCGAGACCTACT
GTGGGACGTGCTCCGACGCTTCGGCGTGCCCCCGAAGATGCTGGCGGTCA
TTCGCCACTTCCACGAGGGCATGAGGGCGTGCGGATGCAACCTGGCCCCG
CTGCTGTTCAACTTGTTCTTTGCCGCGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNACAGGCGACGGACCAACCGCCAGCT
CAAGATCCGGCTACTCCAGGCTGAAGGTGGAGACTCTCCTGTACGGGTGC
GCCTCATCATGGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGGAC
CCACCGCCAGTTCCTCACACGGTGCATCGGCTGGAGCAAGCGGAAACGCT
CAGACCGCCCCCTGTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAG
GAAACCATCGAGGCCACCGTGCGCAAACGGAGACTGTGTTTCGCGGGCTT
CGTTATGCGCATGGAGGACAGCCGCCTCCCCAAGTGCATGCCGTTAGAAG
CGATGGCAGGGGGCGTGGGATACCGTGGCGGGCAGGAGAGCGACTGGGTG
TCTCGTCTAGGAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGA
AGGGGGGAAATGGAAAGAGAGCGCCAAGAACTCGGAGGTGTGGTACAACA
AGGTCGAGGACGGGGCGGCATGGTTCATGAGGAAATGGCACAGGCAGGAA
GCAGAAGCGTCCGCGAAGCGCCAGCGCGCGAGGGAAACAGAAGCAGAGAG
TACGACCATCTCAGGACCGAAGCGAAAGAGAACCGGGGAAGCGGCGGTGG
GGGGAAGAAACGGCGACCGGGCACTGCTGTAGAAGCGAGTAGGGCGGCCG
AGGCAGCACTTGTGGCGAACTATGTACCCGGCTGATATTGTTGTGCCCGG
TTTCCCTCCCTGCTGTATGCTATACTCCTTTATATATGTCCTTTGTATTG
CCTTCGGCCTCTGTGCTGTGTTTCTCTATTTTTCATGACCTCCCTGCCTA
CTCTGCTGTGTTGGGTACCTTGATCTTGCTTTTTCTGTTGCCTTTGTTTT
TGTACGTCTGGCTGTCTGCCCATCTGCCGCCCCTTTGTCCTGTTTGCTCC
TTTACTCCCATGCCCTGGTGCGTAGTGCCTGGTGCTGGTACGTTACCCTT
CGATTTTTTCTTTGGGCGGGTGTGGGAAGCGTCCTCCTTTATTTTTGTTT
TTGTTTTATTTTGATCGGTTTCCGAGGGCTCTGTTCTCGAACGGTCGGTG
CGATACCTGTTCTTTTCTTTCTATCATTTTGTTTT

protein sequence of EsuBft864_7a-0001

>EsuBft864_7 ID=EsuBft864_7|Name=EsuBft864_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=443bp
MDVWQTGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVV
ATRLSHFCEREGVLPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFA
CFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGMRACGCNLAP
LLFNLFFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGDGPTASSRSGYSRLKVETLLYGC
ASSWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCE
ETIEATVRKRRLCFAGFVMRMEDSRLPKCMPLEAMAGGVGYRGGQESDWV
SRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQE
AEASAKRQRARETEAESTTISGPKRKRTGEAAVGGRNGDRALL

mRNA from alignment at Scaffold_340:2668..4512+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft864_7a-0001 ID=EsuBft864_7a-0001|Name=EsuBft864_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1845bp|location=Sequence derived from alignment at Scaffold_340:2668..4512+ (Ectocarpus subulatus male Bft15b)
ATGGACGTGTGGCAGACTGGGGACGTACCACAGCAGTGGAAGGATGCCAC
CATCAAAGTGCTTTTCAAGAAGGGGGACACGATGGAGTGCGGCAACTACC
GGGGCATCTCTCTCGTTGCACACGCCGGCAAGGTGCTGCTAAAGGTCGTC
GCAACACGACTGAGCCACTTCTGCGAGCGAGAGGGCGTCCTCCCGGAGGA
GCAGAGCGGTTTCCGCCCACACCGGTCGACGCTCGACATGCTGTTCGCCA
TTCAGCGGCTCCATGAGCTCGCGAGGAAGAAGAGTACTGCGGTGTTCGCG
TGCTTCGTCGACCTCACCAAGGCATACGATTCGGTGGACCGAGACCTACT
GTGGGACGTGCTCCGACGCTTCGGCGTGCCCCCGAAGATGCTGGCGGTCA
TTCGCCACTTCCACGAGGGCATGAGGGCGTGCGTCTGAAGGGGCGACGGG
CAGTACTCGGAATGGTTCGACGTGGGCCAAGGCCTCCGACAGGGATGCAA
CCTGGCCCCGCTGCTGTTCAACTTGTTCTTTGCCGCGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGGCGACGGACCA
ACCGCCAGCTCAAGATCCGGCTACTCCAGGCTGAAGGTGGAGACTCTCCT
GTACGGGTGCGCCTCATCATGGAGCCTAACAGCGGAGCACTACACGAAGC
TCAATGGGACCCACCGCCAGTTCCTCACACGGTGCATCGGCTGGAGCAAG
CGGAAACGCTCAGACCGCCCCCTGTCCTATGCCCAGGCCCTCATCCAGGC
AGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAACGGAGACTGTGTT
TCGCGGGCTTCGTTATGCGCATGGAGGACAGCCGCCTCCCCAAGTGCATG
CCGTTAGAAGCGATGGCAGGGGGCGTGGGATACCGTGGCGGGCAGGAGAG
CGACTGGGTGTCTCGTCTAGGAGAGGACCTCGTGGCCTTCAACATGGGAG
ACGAAAAGGAAGGGGGGAAATGGAAAGAGAGCGCCAAGAACTCGGAGGTG
TGGTACAACAAGGTCGAGGACGGGGCGGCATGGTTCATGAGGAAATGGCA
CAGGCAGGAAGCAGAAGCGTCCGCGAAGCGCCAGCGCGCGAGGGAAACAG
AAGCAGAGAGTACGACCATCTCAGGACCGAAGCGAAAGAGAACCGGGGAA
GCGGCGGTGGGGGGAAGAAACGGCGACCGGGCACTGCTGTAGAAGCGAGT
AGGGCGGCCGAGGCAGCACTTGTGGCGAACTATGTACCCGGCTGATATTG
TTGTGCCCGGTTTCCCTCCCTGCTGTATGCTATACTCCTTTATATATGTC
CTTTGTATTGCCTTCGGCCTCTGTGCTGTGTTTCTCTATTTTTCATGACC
TCCCTGCCTACTCTGCTGTGTTGGGTACCTTGATCTTGCTTTTTCTGTTG
CCTTTGTTTTTGTACGTCTGGCTGTCTGCCCATCTGCCGCCCCTTTGTCC
TGTTTGCTCCTTTACTCCCATGCCCTGGTGCGTAGTGCCTGGTGCTGGTA
CGTTACCCTTCGATTTTTTCTTTGGGCGGGTGTGGGAAGCGTCCTCCTTT
ATTTTTGTTTTTGTTTTATTTTGATCGGTTTCCGAGGGCTCTGTTCTCGA
ACGGTCGGTGCGATACCTGTTCTTTTCTTTCTATCATTTTGTTTT

Coding sequence (CDS) from alignment at Scaffold_340:2668..4512+

>EsuBft864_7a-0001 ID=EsuBft864_7a-0001|Name=EsuBft864_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1332bp|location=Sequence derived from alignment at Scaffold_340:2668..4512+ (Ectocarpus subulatus male Bft15b)
ATGGACGTGTGGCAGACTGGGGACGTACCACAGCAGTGGAAGGATGCCAC
CATCAAAGTGCTTTTCAAGAAGGGGGACACGATGGAGTGCGGCAACTACC
GGGGCATCTCTCTCGTTGCACACGCCGGCAAGGTGCTGCTAAAGGTCGTC
GCAACACGACTGAGCCACTTCTGCGAGCGAGAGGGCGTCCTCCCGGAGGA
GCAGAGCGGTTTCCGCCCACACCGGTCGACGCTCGACATGCTGTTCGCCA
TTCAGCGGCTCCATGAGCTCGCGAGGAAGAAGAGTACTGCGGTGTTCGCG
TGCTTCGTCGACCTCACCAAGGCATACGATTCGGTGGACCGAGACCTACT
GTGGGACGTGCTCCGACGCTTCGGCGTGCCCCCGAAGATGCTGGCGGTCA
TTCGCCACTTCCACGAGGGCATGAGGGCGTGCGGATGCAACCTGGCCCCG
CTGCTGTTCAACTTGTTCTTTGCCGCGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNACAGGCGACGGACCAACCGCCAGCT
CAAGATCCGGCTACTCCAGGCTGAAGGTGGAGACTCTCCTGTACGGGTGC
GCCTCATCATGGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGGAC
CCACCGCCAGTTCCTCACACGGTGCATCGGCTGGAGCAAGCGGAAACGCT
CAGACCGCCCCCTGTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAG
GAAACCATCGAGGCCACCGTGCGCAAACGGAGACTGTGTTTCGCGGGCTT
CGTTATGCGCATGGAGGACAGCCGCCTCCCCAAGTGCATGCCGTTAGAAG
CGATGGCAGGGGGCGTGGGATACCGTGGCGGGCAGGAGAGCGACTGGGTG
TCTCGTCTAGGAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGA
AGGGGGGAAATGGAAAGAGAGCGCCAAGAACTCGGAGGTGTGGTACAACA
AGGTCGAGGACGGGGCGGCATGGTTCATGAGGAAATGGCACAGGCAGGAA
GCAGAAGCGTCCGCGAAGCGCCAGCGCGCGAGGGAAACAGAAGCAGAGAG
TACGACCATCTCAGGACCGAAGCGAAAGAGAACCGGGGAAGCGGCGGTGG
GGGGAAGAAACGGCGACCGGGCACTGCTGTAG