EsuBft864_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft864_5a-0001
Unique NameEsuBft864_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:22992..26288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LRP2
ProteomeIdEsuBft864_5
Protein domainsPTHR18937
Protein domainsIPR003395
Protein domainsIPR028468
Protein domainsIPR027417
Ownerapollo_admin@sb-roscoff.fr
Notestructural maintenance of Scaffold_omosomes protein 1 os:schizosaccharomyces pombe (strain 972 atcc 24843) gn:psm1 pe:1 sv:2 [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length607
Hectar predicted targeting categoryother localisation
Evalue4.34e-114
EggNOG OGsCOG1196@1|root,KOG0018@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameSMC1
KEGG koko:K06636
KEGG Pathwayko04110,ko04111,ko04113,ko04114,map04110,map04111,map04113,map04114
GOsGO:0000793,GO:0000819,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008150,GO:0008278,GO:0009507,GO:0009536,GO:0009987,GO:0016043,GO:0022402,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0051276,GO:0071840,GO:0098813
Descriptionsister chromatid cohesion
COG categoryD
BRITEko00000,ko00001,ko03036
Cross References
External references for this mRNA
DatabaseAccession
GO0032876
GO0016887
GO0000090
GO0003680
GO0003682
GO0005622
GO0000236
GO0000398
GO0006302
GO0000910
GO0000217
GO0009314
GO0000776
GO0005829
GO0034991
GO0042770
GO0007052
GO0034990
GO0007093
GO0008280
GO0000084
GO0046982
GO0003690
EC3.6.1.3
GO0005730
GO0005654
GO0000087
GO0007126
GO0000800
GO0007064
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft864_5aEsuBft864_5aEctocarpus subulatus male Bft15bgeneScaffold_340 22992..26288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft864_5a-0001EsuBft864_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 22992..26254 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft864_5a-0001-exonagat-exon-99505Ectocarpus subulatus male Bft15bexonScaffold_340 22992..23015 -
EsuBft864_5a-0001-exonagat-exon-99506Ectocarpus subulatus male Bft15bexonScaffold_340 23447..23576 -
EsuBft864_5a-0001-exonagat-exon-99507Ectocarpus subulatus male Bft15bexonScaffold_340 24095..24285 -
EsuBft864_5a-0001-exonEsuBft864_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 24898..24958 -
EsuBft864_5a-0001-exonagat-exon-99508Ectocarpus subulatus male Bft15bexonScaffold_340 25650..25768 -
EsuBft864_5a-0001-exonagat-exon-99509Ectocarpus subulatus male Bft15bexonScaffold_340 26207..26288 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft864_5a-0001-cdsEsuBft864_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 22992..23015 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft864_5a-0001-exonagat-five_prime_utr-14499Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_340 26255..26288 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft864_5a-0001 ID=EsuBft864_5a-0001|Name=EsuBft864_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=607bp|location=Sequence derived from alignment at Scaffold_340:22992..26288- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTGGAGGAGGTGGTGTCTGGCTACAGGAAACAGATGCAGGAGCTGCAGG
CCCAGATCAACCAGATGACCCCCAACATGAGGGCTGTGGAGAGATTCGGC
GACGTGAGCGACCGCCTCAAGGCCTCGGGGCAAACGTTCGAGCAGTCCAA
GCAGAACGCGGCGGGCGCAGTGCTCAAGTTCAACGAGGTCAAACAGCTGA
GGTACGACACCTTCATGCAGGCGTACAACCTCGTGTCCGATAATCTCAAC
ACCATCTACAAGGACCTCACCCGCAGCAGCAAGCATCCCCTAGGAGGAAA
CGCCTTCCTGAGCCTCGACAACCCGGAGGAGCCGTACCTTGGAGGAGTCA
AGTTCAACGCCATGCCCCCAATGAAGCGCTTCCGCGATATGGAGCAGCTG
TCGGGCGGGGAGAAGACGGTGGCAGCGCTCGGCCTTCTCTTCGCGATACA
CAGCTTCCGTCCGGCACCGTTTTTCGTCATGGACGAGATTGACGCTGCCC
TAGACAACATCAATGTGAAGAAGGTGTGCAACTACATCCAGGGGAGGAGC
GGTGACTTCCAATCCATCGTCATCTCCCTCAAGCGCGTCGCTTCCAACGG
GGACTAG
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protein sequence of EsuBft864_5a-0001

>EsuBft864_5 ID=EsuBft864_5|Name=EsuBft864_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=190bp
MQELQAQINQMTPNMRAVERFGDVSDRLKASGQTFEQSKQNAAGAVLKFN
EVKQLRYDTFMQAYNLVSDNLNTIYKDLTRSSKHPLGGNAFLSLDNPEEP
YLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIHSFRPAPFFVMD
EIDAALDNINVKKVCNYIQGRSGDFQSIVISLKRVASNGD
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mRNA from alignment at Scaffold_340:22992..26288-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft864_5a-0001 ID=EsuBft864_5a-0001|Name=EsuBft864_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3297bp|location=Sequence derived from alignment at Scaffold_340:22992..26288- (Ectocarpus subulatus male Bft15b)
TCTGGAGGAGGTGGTGTCTGGCTACAGGAAACAGATGCAGGAGCTGCAGG
CCCAGATCAACCAGATGACCCCCAACATGAGGGTGAGCTTTCTTTTCATA
GAGTGCAACCCAAATAGATGATGCACCTCATGTTAGCAGCTTGTTTCTAC
CAGGGCTGCCCGCTCTTGGCCATTTCCCCGCCATCCGCTGAGGTGTGCTG
TAGAGCTTGGTGACTCTTTTGCCGGATAATTTGAAGAAGTCTACGTCAAG
TGATGCCTAGTTGCGATGACCTGGAAGTTTCATTTCTGTACCATCTTCTG
CCGTTGGCATCGGCGCCTGAGTTTCAAGAGGTGCCACGATCTGTGTATGA
AAAATGCCGCCCATGGGTCACATGGCGGAGGAACAATGATGAATCCATTT
TCGAATTGGTCTGGTTCACAGCAAGCAGTGTTTGAAAGGCCAACACGCGC
ACAGTGGTTCATGAACCATGTCGCCCCCCACCCCCCCCATTCTGATCATG
CTTGCGGGGGTCTCTGTCAGGCTGTGGAGAGATTCGGCGACGTGAGCGAC
CGCCTCAAGGCCTCGGGGCAAACGTTCGAGCAGTCCAAGCAGAACGCGGC
GGGCGCAGTGCTCAAGTTCAACGAGGTCAAACAGCTGAGGTGAGGAAGAA
GAAATAATCGAGTGTGCTTACCAACTGCCGTGTCAGTCCAACGTGCTTGA
GGACAGTAGTTGTTGTGCTGCAGTGCCCAGCACCATGCAGACGCTTGGGA
TGGAAGTTTCGCGCGGCGATACATGCCAGGATGTTGTTTGTTTCTATGTT
TTTCTTCTTTATTATTGTTCCTTGAAGCGAAATGTTCGTGGAAGTGAAGT
GAAAATTCGGCCTCCAATGCATGCTCTGTACAGTGTACATTATGGTTTTA
CTGTCTTGAAGGCAGCAAACACTAATATCCATGCCGCCCATGGAGGGCTT
GTTTTTAAGCCTATGAGGCGGAAGGCCTCTTTGATCTTTACATCGGGCTC
TTTTGGGCTTAGAGTGCTTCTCTCAACCCAGAGTCCTATCATATCTCAGA
AATTCGCGCCGTTGTGTCTGACGCGTTGGGAAGAGGGAGAAGCCGGAAGG
GGAAGCGCGCACGCAGGCGCACAACTCACCATTGGACCCAGTGAAGTGGT
GACCAAAGCCACACTGCACGGGGCGGCAACAATGGGTTACTGCATGACTT
TGCTCAGCCGTGACATGCACCAAGGGTCGAGTACGTGGTGCAACGACCTT
TGCTTGTGTCGCATAACAATCTGGACACAGCAGTCGCCGCTGACGCGTTT
GTCATCTTATTTTTTTGTCCCGTGATCCAGGTACGACACCTTCATGCAGG
CGTACAACCTCGTGTCCGATAATCTCAACACCATCTACAAGGTAAAACAA
GGGTTTGAGGAAAACGATTTTTTCGAGGAACGGTCTTGTAATTTTAATTG
GGTGTGGTTCATGGGAGGCGTTAGACCGTTCAGAATGGAGAACGTCTCGA
GTGCTTATTACACATAATATGGACTAGCGGCAGCCTGACTAGTTTGCGCT
CAGCGTTTATCTGTGCGTGAGGAGATGCTGTGACACGACCTCGTACGTGA
GGTGTAGCGGCTGCAATCATATCTTACGATCGGTCGAGGGACCTCTCATA
TTCACAGTAGCTTCAGCCCCCAAAACCGAACACCATTCACGTCGCGCCGT
GGATTCGACATCAGCAATCGCATCCTAACGGATTATCTTCAGCATACCAA
TCTGTATCACACAACGTTGGCAGTTTATTTATCGAGCAAAGAGCACTCAT
GACGCAATGTCAAGAAAGATCACGGTTTAAACACAGTGGACCCCAGCTCG
AAAGCACATGAACTTGGCTAACAGCAGTGAACTGCGGGGCTCAATGCTTA
CCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCGTGGC
CAGGACCTCACCCGCAGCAGCAAGCATCCCCTAGGAGGAAACGCCTTCCT
GAGCCTCGACAACCCGGAGGAGCCGTACCTTGGAGGAGTCAAGTTCAACG
CCATGCCCCCAATGAAGCGCTTCCGCGATATGGAGCAGCTGTCGGGCGGG
GAGAAGACGGTGGCAGCGCTCGGCCTTCTCTTCGCGATACACAGGTGTGT
GGTGTTGTTGTTGCTCTTCAGATCCAGCGTGCTTGTCTGTGTTTGAACGG
CCTGCCTGGTATTCCGGTTTGACTCACCGGAACGAAGTAGGCGTTTTTTT
TGTTCCTTCTGGCCTTTGAGGGTTGTTATATTTGTATGCAGTGATAGGAG
ATGGGGTTGTCTCATTCCGACGACCGACTATACAGGGAGGGGGACCTTGC
CGGCATGGATTGGGCAGGTGGGAAAAGTTTCTGTTGGGAACAGCGAGGCC
TAAATCATCGATAAAAGCTTGGCCCCACGGATTGAATACTTGCCCCCCAC
CCACCCCTTCATTCTTTCACCCCTTTTGTTGTTGACCTCCTTTTTTCACG
CGGAGTGTCACTCGTTCATCCCTCATGTCGTTTATTTTGCTTTCCCTTTG
CTTGAGCGTCATTCTTTCGCTTCTTTCTGTCGGTCATCGTGTTCTATTTT
TGCGGTGCTTTACTTCTTCGCTCCTTCTCTCGCCCATCTTATTTTTTTTT
TGTGGTACCCAGCTTCCGTCCGGCACCGTTTTTCGTCATGGACGAGATTG
ACGCTGCCCTAGACAACATCAATGTGAAGAAGGTGTGCAACTACATCCAG
GGGAGGAGCGGTGACTTCCAATCCATCGTCATCTCCCTCAAGGTATTGGA
TTGTCGGCATAAAATCTCCCCTTTCACATTGGTGCTGTCTTTATTTGTTC
CTGTTGTTGCTCCTGCTGCTCCTCCTCCTGCTGTGTTGCGCGTTGGTTGA
AATCCATTGTCCCGTCGCCCATACCGTCCCCTTCCGATTTCCTCTGTACC
ACTATTTGCGTGCCCGCGCTCCCTGCTCCACGGCATTCTCCGTCCCGACT
TTGATTATTTTTTCCTCCATCATTGGACTCTGTCGGCTGCCCCTCTGGCC
CCTATCCTCCACTTCTACCAGCTAGACGACCCAACCGGGGTCACATAGGA
GGGGGGGGTTGGACCCTCTCCTGCGGTTCCTGCCTGAGATATTTTTCCCG
CGAGAAGGGTACAGCAATCCCTTCCCTCGCGACTTATGAAGTCGATCAAG
TTCACTAACATCGAGCTTTGCAGCGCGTCGCTTCCAACGGGGACTAG
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Coding sequence (CDS) from alignment at Scaffold_340:22992..26288-

>EsuBft864_5a-0001 ID=EsuBft864_5a-0001|Name=EsuBft864_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=573bp|location=Sequence derived from alignment at Scaffold_340:22992..26288- (Ectocarpus subulatus male Bft15b)
ATGCAGGAGCTGCAGGCCCAGATCAACCAGATGACCCCCAACATGAGGGC
TGTGGAGAGATTCGGCGACGTGAGCGACCGCCTCAAGGCCTCGGGGCAAA
CGTTCGAGCAGTCCAAGCAGAACGCGGCGGGCGCAGTGCTCAAGTTCAAC
GAGGTCAAACAGCTGAGGTACGACACCTTCATGCAGGCGTACAACCTCGT
GTCCGATAATCTCAACACCATCTACAAGGACCTCACCCGCAGCAGCAAGC
ATCCCCTAGGAGGAAACGCCTTCCTGAGCCTCGACAACCCGGAGGAGCCG
TACCTTGGAGGAGTCAAGTTCAACGCCATGCCCCCAATGAAGCGCTTCCG
CGATATGGAGCAGCTGTCGGGCGGGGAGAAGACGGTGGCAGCGCTCGGCC
TTCTCTTCGCGATACACAGCTTCCGTCCGGCACCGTTTTTCGTCATGGAC
GAGATTGACGCTGCCCTAGACAACATCAATGTGAAGAAGGTGTGCAACTA
CATCCAGGGGAGGAGCGGTGACTTCCAATCCATCGTCATCTCCCTCAAGC
GCGTCGCTTCCAACGGGGACTAG
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