EsuBft861_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft861_8a-0001
Unique NameEsuBft861_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:1026156..1026702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft861_8
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length54
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft861_8aEsuBft861_8aEctocarpus subulatus male Bft15bgeneScaffold_630 1026156..1026702 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft861_8a-0001-exonEsuBft861_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 1026156..1026702 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft861_8a-0001-exonagat-three_prime_utr-22379Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 1026156..1026201 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft861_8a-0001-cdsEsuBft861_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 1026202..1026702 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft861_8a-0001EsuBft861_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 1026202..1026702 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft861_8a-0001 ID=EsuBft861_8a-0001|Name=EsuBft861_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=547bp|location=Sequence derived from alignment at Scaffold_630:1026156..1026702- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGAGAGCTTTGTTCACCAGGCGCATGGTTCCGCGTACTCGTACTT
TCCTTCTGACGATAAGGGGGTTGTGCAGGATGGGGTAGACCGTACAACGG
GGAAAGGTTTGCACATGATCATGGTGCATGCGATCGCGAAGCACGGGCCC
TTGGCCGAGCTACAGGAGGGATTTCCTATCCGTGAGGGTTGGTTCAAGGC
TAAGGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTCGTTCAA
GGTGATGCGTGAGTCGGAGGGTAAGGCTGCTGAGTACAACTTTGAGGTGC
CGACGCACGGGTCGTTACCCAATGCGAACGGCAAGAACGGCCTCAGCAAA
GAAGAGAAAGCCTTCGTCACTCGGACGCACTTCAAAAAGAAATTTCCATA
GAAGCTCGAGGAAAAGGCTGAGACGTGCATGAGGGAGAAGGGGTGGG
back to top

protein sequence of EsuBft861_8a-0001

>EsuBft861_8 ID=EsuBft861_8|Name=EsuBft861_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=166bp
MDESFVHQAHGSAYSYFPSDDKGVVQDGVDRTTGKGLHMIMVHAIAKHGP
LAELQEGFPIREGWFKAKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTSFKVMRESEGKAAEYNFEVPTHGSLPNANGKNGLSK
EEKAFVTRTHFKKKFP
back to top

mRNA from alignment at Scaffold_630:1026156..1026702-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft861_8a-0001 ID=EsuBft861_8a-0001|Name=EsuBft861_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=547bp|location=Sequence derived from alignment at Scaffold_630:1026156..1026702- (Ectocarpus subulatus male Bft15b)
ATGGATGAGAGCTTTGTTCACCAGGCGCATGGTTCCGCGTACTCGTACTT
TCCTTCTGACGATAAGGGGGTTGTGCAGGATGGGGTAGACCGTACAACGG
GGAAAGGTTTGCACATGATCATGGTGCATGCGATCGCGAAGCACGGGCCC
TTGGCCGAGCTACAGGAGGGATTTCCTATCCGTGAGGGTTGGTTCAAGGC
TAAGGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTCGTTCAA
GGTGATGCGTGAGTCGGAGGGTAAGGCTGCTGAGTACAACTTTGAGGTGC
CGACGCACGGGTCGTTACCCAATGCGAACGGCAAGAACGGCCTCAGCAAA
GAAGAGAAAGCCTTCGTCACTCGGACGCACTTCAAAAAGAAATTTCCATA
GAAGCTCGAGGAAAAGGCTGAGACGTGCATGAGGGAGAAGGGGTGGG
back to top

Coding sequence (CDS) from alignment at Scaffold_630:1026156..1026702-

>EsuBft861_8a-0001 ID=EsuBft861_8a-0001|Name=EsuBft861_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=501bp|location=Sequence derived from alignment at Scaffold_630:1026156..1026702- (Ectocarpus subulatus male Bft15b)
ATGGATGAGAGCTTTGTTCACCAGGCGCATGGTTCCGCGTACTCGTACTT
TCCTTCTGACGATAAGGGGGTTGTGCAGGATGGGGTAGACCGTACAACGG
GGAAAGGTTTGCACATGATCATGGTGCATGCGATCGCGAAGCACGGGCCC
TTGGCCGAGCTACAGGAGGGATTTCCTATCCGTGAGGGTTGGTTCAAGGC
TAAGGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTCGTTCAA
GGTGATGCGTGAGTCGGAGGGTAAGGCTGCTGAGTACAACTTTGAGGTGC
CGACGCACGGGTCGTTACCCAATGCGAACGGCAAGAACGGCCTCAGCAAA
GAAGAGAAAGCCTTCGTCACTCGGACGCACTTCAAAAAGAAATTTCCATA
G
back to top