EsuBft861_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft861_7a-0001
Unique NameEsuBft861_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:1025767..1026154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft861_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length38
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft861_7aEsuBft861_7aEctocarpus subulatus male Bft15bgeneScaffold_630 1025767..1026154 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft861_7a-0001-exonEsuBft861_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 1025767..1026154 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft861_7a-0001-cdsEsuBft861_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 1025767..1026132 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft861_7a-0001-exonagat-five_prime_utr-14488Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 1026133..1026154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft861_7a-0001EsuBft861_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 1025767..1026132 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft861_7a-0001 ID=EsuBft861_7a-0001|Name=EsuBft861_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=388bp|location=Sequence derived from alignment at Scaffold_630:1025767..1026154- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTAATTTGGACACCGCCGTACATGCCGACTTTCCAGCCGATCGAGCTGT
TCTGGCAGCACGGCAAGCAATACGTGAGCATTCATTTTGAGAAGGGGCGG
AACATGTTGGATGTCTGGAAGCAAACCCGTCTCGGTTGGTATGGCGACCC
GGAATGGGACGGTCAGGAGGGGGGATGGAAGGCAGTCAATTGTGGAAAAT
TGGTGGAACATGCCATTGGCAAGATGAACGAGTGGATCGGCCTGTATGGT
GGGAACCTGAGCGGTACGATCGGTAGCCTCGAGTATCCAGGAGCAGAGTA
CCGAGAGGCTACGGCCGAGGATGAGATAGAGGATGGGGTGGAGGAGCAGA
CGGATGAGTGGATGCCATTGAGGTCTGAAAAAAAATGA
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protein sequence of EsuBft861_7a-0001

>EsuBft861_7 ID=EsuBft861_7|Name=EsuBft861_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=121bp
MPTFQPIELFWQHGKQYVSIHFEKGRNMLDVWKQTRLGWYGDPEWDGQEG
GWKAVNCGKLVEHAIGKMNEWIGLYGGNLSGTIGSLEYPGAEYREATAED
EIEDGVEEQTDEWMPLRSEKK
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mRNA from alignment at Scaffold_630:1025767..1026154-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft861_7a-0001 ID=EsuBft861_7a-0001|Name=EsuBft861_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=388bp|location=Sequence derived from alignment at Scaffold_630:1025767..1026154- (Ectocarpus subulatus male Bft15b)
GTTAATTTGGACACCGCCGTACATGCCGACTTTCCAGCCGATCGAGCTGT
TCTGGCAGCACGGCAAGCAATACGTGAGCATTCATTTTGAGAAGGGGCGG
AACATGTTGGATGTCTGGAAGCAAACCCGTCTCGGTTGGTATGGCGACCC
GGAATGGGACGGTCAGGAGGGGGGATGGAAGGCAGTCAATTGTGGAAAAT
TGGTGGAACATGCCATTGGCAAGATGAACGAGTGGATCGGCCTGTATGGT
GGGAACCTGAGCGGTACGATCGGTAGCCTCGAGTATCCAGGAGCAGAGTA
CCGAGAGGCTACGGCCGAGGATGAGATAGAGGATGGGGTGGAGGAGCAGA
CGGATGAGTGGATGCCATTGAGGTCTGAAAAAAAATGA
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Coding sequence (CDS) from alignment at Scaffold_630:1025767..1026154-

>EsuBft861_7a-0001 ID=EsuBft861_7a-0001|Name=EsuBft861_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=366bp|location=Sequence derived from alignment at Scaffold_630:1025767..1026154- (Ectocarpus subulatus male Bft15b)
ATGCCGACTTTCCAGCCGATCGAGCTGTTCTGGCAGCACGGCAAGCAATA
CGTGAGCATTCATTTTGAGAAGGGGCGGAACATGTTGGATGTCTGGAAGC
AAACCCGTCTCGGTTGGTATGGCGACCCGGAATGGGACGGTCAGGAGGGG
GGATGGAAGGCAGTCAATTGTGGAAAATTGGTGGAACATGCCATTGGCAA
GATGAACGAGTGGATCGGCCTGTATGGTGGGAACCTGAGCGGTACGATCG
GTAGCCTCGAGTATCCAGGAGCAGAGTACCGAGAGGCTACGGCCGAGGAT
GAGATAGAGGATGGGGTGGAGGAGCAGACGGATGAGTGGATGCCATTGAG
GTCTGAAAAAAAATGA
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