EsuBft861_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft861_2a-0001
Unique Name	EsuBft861_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_630	contig	Scaffold_630:947253..952367 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft861_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	56
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft861_2a	EsuBft861_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_630 947253..952367 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft861_2a-0001	EsuBft861_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_630 947275..947493 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft861_2a-0001-exon	EsuBft861_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 947253..947786 +
EsuBft861_2a-0001-exon	agat-exon-99712	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 952335..952367 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft861_2a-0001-exon	agat-five_prime_utr-14485	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_630 947253..947274 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft861_2a-0001-cds	EsuBft861_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_630 947275..947493 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft861_2a-0001-exon	agat-three_prime_utr-22374	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_630 947494..947786 +
EsuBft861_2a-0001-exon	agat-three_prime_utr-22375	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_630 952335..952367 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_630:947253..952367+
coding sequence from alignment at Scaffold_630:947253..952367+

spliced messenger RNA

>EsuBft861_2a-0001 ID=EsuBft861_2a-0001|Name=EsuBft861_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=567bp|location=Sequence derived from alignment at Scaffold_630:947253..952367+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCCCCCTCCTTCTCCTCTTTCATGCCAAACGCCACGAGGTCCTCTCCTA
GGCGATACACCCAGTCGCTCTCCTGCCCGCCCCGGTATCCGGTACCCCCC
GCCATCGCTCCCAGCAGCATGCGCTTGGGGAGGCGGTTGTCCTCCATGCG
CATAACGAAGCCCGCAAAACACAGCCTCCGTTTGCGCACGGTGGCCTCGA
TGGTTTCCTCGCAGCCTGCCTGGATGAGGGCCTGGGCATAGGACAGGGGG
CGGTCTGAGCGTTTCCGCTTGCTCCAGCCGATGCACCGTGTGAGGAACTG
GCGGTGGGTCCCATTGAGCTTCGTGTAGTGCTCCGCTGTTAGGCTCCACG
AGGCGCACCCATACAGGAGAGTCTCCACCACTTCAGCCTGGAGAAGCCGG
ATCTTGAGCTGGCGGTCGGCCCGTCGCCTGTCGTACATCGAAGCACTGTT
CCGGCGGTAGCACTTCCACGCTCGGCAGCTGCGGCTCGTGATCTCCCGGT
CGGCCTTCCCGTCCGCGGAGATGGTACGTCCGAGTAAACCATAATCGACT
TCGTAAGTCGCGAGGGA

protein sequence of EsuBft861_2a-0001

>EsuBft861_2 ID=EsuBft861_2|Name=EsuBft861_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=72bp
MPNATRSSPRRYTQSLSCPPRYPVPPAIAPSSMRLGRRLSSMRITKPAKH
SLRLRTVASMVSSQPAWMRAWA

mRNA from alignment at Scaffold_630:947253..952367+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft861_2a-0001 ID=EsuBft861_2a-0001|Name=EsuBft861_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5115bp|location=Sequence derived from alignment at Scaffold_630:947253..952367+ (Ectocarpus subulatus male Bft15b)
CCCCCCCTCCTTCTCCTCTTTCATGCCAAACGCCACGAGGTCCTCTCCTA
GGCGATACACCCAGTCGCTCTCCTGCCCGCCCCGGTATCCGGTACCCCCC
GCCATCGCTCCCAGCAGCATGCGCTTGGGGAGGCGGTTGTCCTCCATGCG
CATAACGAAGCCCGCAAAACACAGCCTCCGTTTGCGCACGGTGGCCTCGA
TGGTTTCCTCGCAGCCTGCCTGGATGAGGGCCTGGGCATAGGACAGGGGG
CGGTCTGAGCGTTTCCGCTTGCTCCAGCCGATGCACCGTGTGAGGAACTG
GCGGTGGGTCCCATTGAGCTTCGTGTAGTGCTCCGCTGTTAGGCTCCACG
AGGCGCACCCATACAGGAGAGTCTCCACCACTTCAGCCTGGAGAAGCCGG
ATCTTGAGCTGGCGGTCGGCCCGTCGCCTGTCGTACATCGAAGCACTGTT
CCGGCGGTAGCACTTCCACGCTCGGCAGCTGCGGCTCGTGATCTCCCGGT
CGGCCTTCCCGTCCGCGGAGATGGTACGTCCGAGGTACACAAACCGATCT
GTCTGCTTGTACGTCTGGCCGGCGGCGCTGACCGTGAACGGGCGTTCCTC
GATCCCTTTTGGCAGCATGCACATGATCTCCGTCTTGGGCTCCGACACCA
TCAGTCCGAACAGGCCGGCCACGCGCACGATGACCGACATCATCTTCTCG
AGACTCTCCGGCGAGCGCGAGACGATGGCCGCGTCGTCAGCGTAGAGCAT
GTCCCACAGGGCCTCTGCGACCGTCACCATCATCGCCTTCTTCCCCGCCG
ACCTGCCCCTCTTGCCCGTGCACTCCACTCGTGTTGCGATCTTGATCATA
TCCGCCGTCACCTTGGGGTCCTTGTCGAACTCGGTCACGGCGACCATGAG
CATCGCGGCAAAGAACAAGTTGAACAGCAGCGGGGCCAGGTTGCACCCCT
GTCGGAGACCTTGGCCGACGTCAAACCATTCCGAGTACTGCCCGTCGTCC
GTTCGAACCCGCGCCCTCATGCCCTCGTGGAAGTGGCGAATGACCGCCAG
CATCTTCGGGGGCACGCCGAAGCGTCGGAGCACGTCCCGCAGTAGGTCTC
GGTCCACCGAATCGTATGCCTTGGTGAGGTCGACGAAGCACGCGAACACC
GCAGTACTCTTCTTCCTCGCGAGCTCATGGAGCCGCTGGATGGCGAACAG
CATGTCGAGCGTCGACCGGTGTGGGCGGAAACCGCTCTGCTCCTCCGGGA
GGATGCCCTCTCGCTCGCAGTAGTGGCTCAGGCGTGTTGCAACGACCTTA
AGCAGCACCTTGCCGGCGTGTGCAACGAGAGAGATGCCCCGGTAGTTGCC
GCACTCCATCGTGTCCCCCTTCTTGAACAGAACCTTGATGGTGGCGTCCT
TCCACTGCTGCGGTACGTTCCCCGTCTGCCACACGTCCACGACGATGGCG
TGGAATTCGCGGAGGAAGCCTCGGTCTCCATCCAGGAACAGCTTGATCAG
CTCAGCCGGTAGGTCGTCCGGCCCGACGGCCTTTCTGTTGGCCATTTCCC
GTACCGCTTCCTCAACCTCAAGTAGAGATGGGATGTCGTCGAGTGGCACG
CACGTGGGCCACCGCTTGACCTTGTCAGCCGCATGCAGGTCGATGGTCGG
CGACTTGGTGTTGAGAAGCTTGTGGAACCACCGTGCCCACCGTTGGCGAA
TAAACGTGGGGTCCCGAAGGACCTTGCCGTCCTCGTCCTTGATGTTCTGA
GAGGTGAACGACCTCTTACCTTCGACGTCGATCATCTTCAGGTGCCTGTA
GAAACCCGCCTGGTCCCCCTCACGGCTCTTCTTCTCGAGCTGCCTCACAT
AGCCCTCGAAGAACTTTTCCAGTGCTCTCCACCTCGCGCTGCTGCGTTTC
TTCCGCGCCGCCTTGAGCTTCGCCTTCAGGGTCGTCTCTAAGTCGCTGTT
CTTTGAGGCCCCGCGCAGCTGCTGTTGGGCCACTCTTATCTCCCTAGACG
CTTCGGAAATCTCGTGCTGCGCTTCGCTCGTGTACCATCCTCCCTTCCCT
CGTGCGCTCCTCGCCAGCGGCGCGATCTCCGCAGCGGCCGACATCACCAC
AGCGGTGAGCTCGGCGGCGGTCTCTCCCGTTGGCCTGCTGAGGGCCGTGG
GCGGAGGGCGGTTGAGAGCCCTGTCTTGGAAGACGGCCCGTAGGTGCACA
TCCTTCCTCAACCGTTCGAGGTCGATACGGATCCGGCTGCTTCCGCTGTT
TCCCCGCGTTCGTCGGTTGGGTGCGACACGGGGGGGGGAGCGGACAGTCG
TATGCACCAGGTTGTGGTCAGAGTCCTTGAAATCGACACGTTTGACGGAG
GCATTACGTACGAGACGCCGGTCCGTCTGTCGCATGAGGATGAAGTCGAG
GCGGTGCTTCTCCTTCCCCTTGTTGGAGCTCTGGAACGTATGCTGCACTC
CTCCTTTCGGTGTCCGGAAGTAGGTGTTGATCAGGGAGAGTCGGTTGTCT
GCTGCCAGTCCGAGAAGTCGTTCCCCGTTGTTGTTCATAATGTCGCGTCC
GTACGCGCCCATAATCTTGGCATCGCAGCATCCGTCTCGCCTCCTGCCAG
TACGTGCGTTGGCGTCCATTAGTACCACGAGATGGTCACGGCTATGGACC
TCCCGGATCTCTGCGTCGAGAGCAGTCCAGAAGGAGTCCTTGGCATTGAC
ATCACCGCCCGCGGTGTTGCGGGCAGTTTCCGTAGGGGCGTACCCCACCA
CGAAAGTTACTCCGCAGGTGCGGCCAATTTGCAGGCGCACCTTCATCAGC
CTCGGGCTAATGCACTCCACCGTCCTACCTCCCTCGCCTACGCTGTCCCA
CATGGTCTCCTTAATCGCTATGCCCACACCGTGCACGCCCCTCTTGTCCT
TGGTGCCGGCACGGGCACCACTCCAAATGATCACGTACCCGTCGTGTGTA
ATCGCGCCTTGTCCCGCTCGTCGGGTCTCTTGGAGTCCTATCACATCACA
GTCGGTCGCGGCACAGATCTGCATGACCGTCATCACGTTGTGGCCGATGG
GGTTCCTGCCGCTGTAGGCGAGCGTGCGTACGTTGAACGTGCCGAACGAT
AAATCGCCCTCCCGTGCCTTCTTCTTCGCGGTCGCCTTCACGCCCGCTGC
GATCTCCTGTCGCTCTCGGTCCGCCTCGCGCTGGGGGGGTGTTTTCTTCC
GTTTAATCCGAGCGGCGAGTTTCTCCGCATCGATCCATCTTTGCAGGGCT
CGGTGCTTGCCTGTGGTGTTTGGACGAGGAGGGTGCAGCACTCCCCCCCC
GCGTCGCCCGCGGTTATCTCCCTTCTCCCGCGAACGGTGCTTACTCGCGT
GGTTTTTACGAATCTCTCTGCTCCTCCAGCTTCGTGGGCCACGTTTTCCG
CGACGGTGGTTACCAGGTGCAGTTTGCCGCTTTGCATTGCTGCCGCGGGG
ACAAGGTCCACATACACGTCTCGCCACTACCACCGTCTGTGCATCCTCAC
CGCCACGCTGAGCCAGCGCGGCGGTGAGTTGCACCTTGGGACACCACCCA
CCTACTATCTGTTGTAGCCTGGTTCGCCCGCGAGGGGCTCACAAGGTCGA
TTTCGGCCCCGGCCGGGGAGCAGGCCGGGGAGGGGAAGAGGTACTGTACT
CCACTGGTTCCGGATAGTATTCCGAGTATCTGCTCGGGTTCCAGCAAAGG
GCGTGTTGATGACGTCATTCTTGCGCAGTGCGGCGAGTTTCATCTGTGTG
TGTACCACCAGAACCAGACCACCAGCATCTCGGTGCTCTACTCACAGGGT
ACTCGAGCGCTAGTAAAAGTACAAGTAACTGCAGAGTACCCGACAGGGGA
GGTAGCAGGTAGCAGCCGATTTATCCCGGAGTACCGCGATATCCCTAGTA
TCGACTCGAGGGACATCAGGAAGTGTCTACCTGCGAAGTTCAACGGAACA
GACGAAGACCTCCTGAAGGCAGAGATGGCGCTTGACCCGCTGTCAAACGA
CTCGCCTCCCAAGGAGGCTGACATTGGCCTCTAGACGGGTAGTTCAACTG
TCAAGTAAAAAGTTAAAGTCGATTTCTAGCACAAGAACGAATAGCTATAG
CTATCAGTTGCACTTTTGCTTTTACTTGTTGGTTTTGTTGCCCTGCTTGA
GGCAATTTTCATGGCCGACACAAGAACCTCGAAAGGGACGGACGGGGAAG
GGTTGTCTTGTCTTGTTGTCTTTCTATTCGTATTGTTTTCGGTCTCTTTG
CTGCACTGGAACGCTTCTTATGTGCATGGGTCCTGGGACGCATAAATATG
GGTCTGGACACTGCTGTTTTGTCCTCGGCGTCAACAATAATACTGTACTT
GAACCAATAGTACGTTTAGTACAGCCCTCGATACTGTACTAAAACCTACA
GTACGTTTAGTACAGCCAGCCCTCGACACTGTACTAAAACCTACAGTAAG
TACGTTTAGTACAGCCCTCGATACTGTACTAAAATCAGCAGTACGTTTAG
TACAGCTTTCGATACTGTACTAAAATCAGCAGTACGTTTAGTACAGCCCT
CGATACTGCACTACAATACTTCGGGTTTAGTACCGGGTTTGGATCGGTAC
TACTCGGCTTAGTATAGTACTTCTGAAAATACTGTACTATACTATTGGCT
TTAGTACAGCTTTCGATACTGTACTATAACCAATAGTACGTTTTGTGCAG
TCCTCGATACTGTACTATACTGCACGTTTAGTACAACTCCTGATACTATA
CTAAAGAGTAGGTTTAGTACTACAATCGATACTGTACTAAACATACTGTA
CTGTACTAAACACACCCTTGGAATCGTTCGACATTGAAGGGGTCTTCCGC
GATGCAGTTACACAATTGAGGCACCCGGGTTATCCGCGCCTTCTCTGCCG
GGTCTCTCTACAAAATCAGAGACGTCACCACACACATCGGTCGCCCCGGT
GGTCTAGTGGGTAGTCTCGCAGCCTGCTAAGGGCCAGGTCATGGGTTCGA
GTTCCGGTAGAGAGAGTTTTTTTCTCACTCAATAAATCCTGGTCTAGGAT
GAAAGCGACGCGCTGCAAAGCTCGTTTGTTAGTAAACCATAATCGACTTC
GTAAGTCGCGAGGGA

Coding sequence (CDS) from alignment at Scaffold_630:947253..952367+

>EsuBft861_2a-0001 ID=EsuBft861_2a-0001|Name=EsuBft861_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=219bp|location=Sequence derived from alignment at Scaffold_630:947253..952367+ (Ectocarpus subulatus male Bft15b)
ATGCCAAACGCCACGAGGTCCTCTCCTAGGCGATACACCCAGTCGCTCTC
CTGCCCGCCCCGGTATCCGGTACCCCCCGCCATCGCTCCCAGCAGCATGC
GCTTGGGGAGGCGGTTGTCCTCCATGCGCATAACGAAGCCCGCAAAACAC
AGCCTCCGTTTGCGCACGGTGGCCTCGATGGTTTCCTCGCAGCCTGCCTG
GATGAGGGCCTGGGCATAG