EsuBft860_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft860_8a-0001
Unique NameEsuBft860_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_498contigScaffold_498:277041..279359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft860_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_010290.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft860_8aEsuBft860_8aEctocarpus subulatus male Bft15bgeneScaffold_498 277041..279359 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft860_8a-0001-exonagat-exon-93012Ectocarpus subulatus male Bft15bexonScaffold_498 277041..277352 +
EsuBft860_8a-0001-exonEsuBft860_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_498 277758..277944 +
EsuBft860_8a-0001-exonagat-exon-93011Ectocarpus subulatus male Bft15bexonScaffold_498 278366..278583 +
EsuBft860_8a-0001-exonagat-exon-93010Ectocarpus subulatus male Bft15bexonScaffold_498 278862..279359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft860_8a-0001-cdsEsuBft860_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_498 277041..277352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft860_8a-0001EsuBft860_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_498 277041..279359 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft860_8a-0001 ID=EsuBft860_8a-0001|Name=EsuBft860_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1215bp|location=Sequence derived from alignment at Scaffold_498:277041..279359+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGATAAAGATGTATCAAGAACGAGACGGTATACTCTGTCCGGCAG
CGCACAACGTCCGCCCTTCAGCCCATTGTCTCCGGTGCACCGCTCGTGCA
TCGCTCCCGAGGAGGGTTGCCGAGAGGGCGAGGGTCGGTGGAATTCAGAA
GCACAAGAGACACAACCGGCGGAGGCGCGAACAGGAGGAGACTTGAGTGC
GCTGGAGCAAGAGGAGTGGGTGAAGGTCTCTTGGAAGAAAGGGGAGTGCA
GGGAGGAGATTAAGCTTATTGCAGAGGCGTCCGGCCTGGCTTTCGACGAC
GCTCGAATCGTGGCCTTGCGTCTATACAACCACTTCAACTGGCTCCTTCA
GCTCCAGGAACGGTCGGAACAGCTCTTGGTAGTGATAGGCCGGGAACGGC
GTCTGTTTCTGACCCTCGTCAGAAACGAAGCCCTTGCTCTATCTCAAGCA
TCTGCTACCCATAAGGCTATGGCCGGCCGTGACGAGGCGGCTAAAACAGG
GTCCTACGGAGCCGCAGAAGGAGGCGGCTGTGACACCACGAAGGAACAGT
TCAACCGCTACGTCAAGGGGATGTGCGTGGTTTGCAACGAAGGAAGCTTC
GACCAGGTGTTGGACTTGCTCTTCCGGGCCTACTCGACGGCGAGGGACGA
TTGCACGATCACGCGCAACGAAATGGCGGCGATACTCTCCAAGCATGTCG
TCTATGAGGACTCAGAGGGGTTGTATTTGAAGTTCTTCTGGTGCGTTGCT
GTGAACAACATGCGCTCTTCTTTCGCTGAGACACCTTGGGAGAGGGAGCC
CATGGATATCACTCACTCCTCCTCTTCTGCTGATTGCCCGAACGTTCGAC
GTCATCAAACCTTGACCTGTGCGAAAACCTGTGCGAAACCACAACAGGAC
CCAACGGAGGAAAAAGATCGGGTGTACAGATGGCTGAAACGACAATTTGT
ACACCTTGCACCGACGACCTCTCGGACGACAAACTTGGGAACGGCTACAA
CCATGATTGCCTCGAGTGGCCATGTAGCAGCAGCAGGGAAGTATCAAGAA
GGTGGCGGTTGCGTAAGCTGGGACAGCGCTCGCGAGCTTCTTCGGCGAGG
CCCCCAGCGATTGATGGACTCTTTGGCGGTGGACTTGCCCTGCCTGTCTA
AGGACCTGTGGAGTGCGGACCTCGTTGATTTGGGGAGAACCAATCTCATG
TCGTCGTTGCAGTAG
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protein sequence of EsuBft860_8a-0001

>EsuBft860_8 ID=EsuBft860_8|Name=EsuBft860_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=404bp
MEDKDVSRTRRYTLSGSAQRPPFSPLSPVHRSCIAPEEGCREGEGRWNSE
AQETQPAEARTGGDLSALEQEEWVKVSWKKGECREEIKLIAEASGLAFDD
ARIVALRLYNHFNWLLQLQERSEQLLVVIGRERRLFLTLVRNEALALSQA
SATHKAMAGRDEAAKTGSYGAAEGGGCDTTKEQFNRYVKGMCVVCNEGSF
DQVLDLLFRAYSTARDDCTITRNEMAAILSKHVVYEDSEGLYLKFFWCVA
VNNMRSSFAETPWEREPMDITHSSSSADCPNVRRHQTLTCAKTCAKPQQD
PTEEKDRVYRWLKRQFVHLAPTTSRTTNLGTATTMIASSGHVAAAGKYQE
GGGCVSWDSARELLRRGPQRLMDSLAVDLPCLSKDLWSADLVDLGRTNLM
SSLQ
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mRNA from alignment at Scaffold_498:277041..279359+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft860_8a-0001 ID=EsuBft860_8a-0001|Name=EsuBft860_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2319bp|location=Sequence derived from alignment at Scaffold_498:277041..279359+ (Ectocarpus subulatus male Bft15b)
ATGGAAGATAAAGATGTATCAAGAACGAGACGGTATACTCTGTCCGGCAG
CGCACAACGTCCGCCCTTCAGCCCATTGTCTCCGGTGCACCGCTCGTGCA
TCGCTCCCGAGGAGGGTTGCCGAGAGGGCGAGGGTCGGTGGAATTCAGAA
GCACAAGAGACACAACCGGCGGAGGCGCGAACAGGAGGAGACTTGAGTGC
GCTGGAGCAAGAGGAGTGGGTGAAGGTCTCTTGGAAGAAAGGGGAGTGCA
GGGAGGAGATTAAGCTTATTGCAGAGGCGTCCGGCCTGGCTTTCGACGAC
GCTCGAATCGTGGTGAGGATGGCAACAGCGGTCAAGTATGCCGACATCAG
TTGGGAGTGAGCCATACATGTGCCGGACCGAGCACCCACTCAGAGTAGAC
TTCCGAGTTGACCATACGGCATTACGTTGTCAACTGTCAGGAGCCGGCAG
TCTTCTGATGATGATGACACGTGTGCCAGAAAGTACGTCAAGTGGATAGA
TAACGAGCCTACAGTTAACTCCCAACATGCATCCATCTCTACACGCGGTA
CGGTGAAAGAAATCTAAAAAACTGAGAGCAATCAACTCTGAAAATCACGG
CGGACTGCTGTGTCAACGCTCCGATTTCTTGGTCTGGGTATGCTACAGCA
GTAGCCATGCGACTGGGCGCAACAAATTGAACACATATCGATTTTTCTTC
TCTTCCATTTTGAGTAGGCCTTGCGTCTATACAACCACTTCAACTGGCTC
CTTCAGCTCCAGGAACGGTCGGAACAGCTCTTGGTAGTGATAGGCCGGGA
ACGGCGTCTGTTTCTGACCCTCGTCAGAAACGAAGCCCTTGCTCTATCTC
AAGCATCTGCTACCCATAAGGCTATGGCCGGCCGTGACGAGGCGGCTAAA
ACAGGTGAGATGTAGGGACAGGGCGACACGTCAGAGAGTGGGGAGATCGA
ACCCGCCATTTGACAGAAGACTGGTTTGCATAAATGTGTTGCCATCGGGC
GGTCGATTGTAGTAGGGACAAAGAATTCCACATGACATTCTGTCCAACAA
GTTCCAAGTGTTCCGGGTACTACGCTCTGTGATCGTTATCCCATGCACCT
CCATTTCCGCACACGTTTAACGTCATATGTGTAGTCAACAGCTTTTATAC
TTCATTTTCATCTAGGCAATATGTTGTCCCTAGTCATTCCTCTTGGTTAT
ACACCAACTGTAGCTCACTGCTAACCAAGAGACTATTTTGTGCGTTCTCC
TGAGATGCATTGCTCCTCTTGAAAGCCAAACCTACATCACGTGGGAATTG
TGGCGCCGTAAACTCCCGCATGAAGGGTCCTACGGAGCCGCAGAAGGAGG
CGGCTGTGACACCACGAAGGAACAGTTCAACCGCTACGTCAAGGGGATGT
GCGTGGTTTGCAACGAAGGAAGCTTCGACCAGGTGTTGGACTTGCTCTTC
CGGGCCTACTCGACGGCGAGGGACGATTGCACGATCACGCGCAACGAAAT
GGCGGCGATACTCTCCAAGCATGTCGTCTATGAGGACTCAGAGGTGAGGG
CTAACATGCGTCGTACCGCAACAACATGTCACGAAAACTGCCACCAGAAA
AGTAAAAACGTAAGGGAGGCAGACATCGTAAGGAAGAATTTTCCCATTGC
CCGGGGCTCAATATAAAACGCCACAATGCCCGGAAGGGTTGAAGTGCGCA
GAGTTTGGAAGCACCGTCACCAGTTGTAGACCTTCAAGGCTTCAGCGGTG
AAGTTTGGTTGCGGATCGGATGAAAACAAAGTTTATGATAAAGTAAACGC
TGCTGTGGCTAGACCAATCAGGGGTTGTATTTGAAGTTCTTCTGGTGCGT
TGCTGTGAACAACATGCGCTCTTCTTTCGCTGAGACACCTTGGGAGAGGG
AGCCCATGGATATCACTCACTCCTCCTCTTCTGCTGATTGCCCGAACGTT
CGACGTCATCAAACCTTGACCTGTGCGAAAACCTGTGCGAAACCACAACA
GGACCCAACGGAGGAAAAAGATCGGGTGTACAGATGGCTGAAACGACAAT
TTGTACACCTTGCACCGACGACCTCTCGGACGACAAACTTGGGAACGGCT
ACAACCATGATTGCCTCGAGTGGCCATGTAGCAGCAGCAGGGAAGTATCA
AGAAGGTGGCGGTTGCGTAAGCTGGGACAGCGCTCGCGAGCTTCTTCGGC
GAGGCCCCCAGCGATTGATGGACTCTTTGGCGGTGGACTTGCCCTGCCTG
TCTAAGGACCTGTGGAGTGCGGACCTCGTTGATTTGGGGAGAACCAATCT
CATGTCGTCGTTGCAGTAG
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Coding sequence (CDS) from alignment at Scaffold_498:277041..279359+

>EsuBft860_8a-0001 ID=EsuBft860_8a-0001|Name=EsuBft860_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1215bp|location=Sequence derived from alignment at Scaffold_498:277041..279359+ (Ectocarpus subulatus male Bft15b)
ATGGAAGATAAAGATGTATCAAGAACGAGACGGTATACTCTGTCCGGCAG
CGCACAACGTCCGCCCTTCAGCCCATTGTCTCCGGTGCACCGCTCGTGCA
TCGCTCCCGAGGAGGGTTGCCGAGAGGGCGAGGGTCGGTGGAATTCAGAA
GCACAAGAGACACAACCGGCGGAGGCGCGAACAGGAGGAGACTTGAGTGC
GCTGGAGCAAGAGGAGTGGGTGAAGGTCTCTTGGAAGAAAGGGGAGTGCA
GGGAGGAGATTAAGCTTATTGCAGAGGCGTCCGGCCTGGCTTTCGACGAC
GCTCGAATCGTGGCCTTGCGTCTATACAACCACTTCAACTGGCTCCTTCA
GCTCCAGGAACGGTCGGAACAGCTCTTGGTAGTGATAGGCCGGGAACGGC
GTCTGTTTCTGACCCTCGTCAGAAACGAAGCCCTTGCTCTATCTCAAGCA
TCTGCTACCCATAAGGCTATGGCCGGCCGTGACGAGGCGGCTAAAACAGG
GTCCTACGGAGCCGCAGAAGGAGGCGGCTGTGACACCACGAAGGAACAGT
TCAACCGCTACGTCAAGGGGATGTGCGTGGTTTGCAACGAAGGAAGCTTC
GACCAGGTGTTGGACTTGCTCTTCCGGGCCTACTCGACGGCGAGGGACGA
TTGCACGATCACGCGCAACGAAATGGCGGCGATACTCTCCAAGCATGTCG
TCTATGAGGACTCAGAGGGGTTGTATTTGAAGTTCTTCTGGTGCGTTGCT
GTGAACAACATGCGCTCTTCTTTCGCTGAGACACCTTGGGAGAGGGAGCC
CATGGATATCACTCACTCCTCCTCTTCTGCTGATTGCCCGAACGTTCGAC
GTCATCAAACCTTGACCTGTGCGAAAACCTGTGCGAAACCACAACAGGAC
CCAACGGAGGAAAAAGATCGGGTGTACAGATGGCTGAAACGACAATTTGT
ACACCTTGCACCGACGACCTCTCGGACGACAAACTTGGGAACGGCTACAA
CCATGATTGCCTCGAGTGGCCATGTAGCAGCAGCAGGGAAGTATCAAGAA
GGTGGCGGTTGCGTAAGCTGGGACAGCGCTCGCGAGCTTCTTCGGCGAGG
CCCCCAGCGATTGATGGACTCTTTGGCGGTGGACTTGCCCTGCCTGTCTA
AGGACCTGTGGAGTGCGGACCTCGTTGATTTGGGGAGAACCAATCTCATG
TCGTCGTTGCAGTAG
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