EsuBft858_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft858_2a-0001
Unique NameEsuBft858_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_455contigScaffold_455:23129..24823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LNG6
ProteomeIdEsuBft858_2
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length107
Hectar predicted targeting categorysignal peptide
Evalue2.25e-49
EggNOG OGsCOG1404@1|root,KOG1114@2759|Eukaryota
Ec32 ortholog descriptionpeptidase S8 and S53
Ec32 orthologEc-10_005730.1
Date last modified2016-06-14
Date creation2016-06-14
Descriptiontripeptidyl-peptidase activity
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft858_2aEsuBft858_2aEctocarpus subulatus male Bft15bgeneScaffold_455 23129..24823 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft858_2a-0001-exonagat-exon-89714Ectocarpus subulatus male Bft15bexonScaffold_455 23129..24187 +
EsuBft858_2a-0001-exonEsuBft858_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_455 24804..24823 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft858_2a-0001-exonagat-five_prime_utr-14445Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_455 23129..23298 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft858_2a-0001-cdsEsuBft858_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_455 23299..24187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft858_2a-0001EsuBft858_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_455 23299..24823 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft858_2a-0001 ID=EsuBft858_2a-0001|Name=EsuBft858_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1079bp|location=Sequence derived from alignment at Scaffold_455:23129..24823+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTCTCCACCCGGCACATACACAAAACATCCCCTGGCTTGCCCTGGCCGT
GAAAGTATCTCCCTGGGGGCACACTGAAGTCGCAGCAGACACCGTCAGCC
TTGCGGTGGAGTGCCCTTGCCTCTCTTGCACAAGTAAAGACGCACAGCAG
TAGAGAGTAGAGAGAGATCTATGCATAGAAACATCATGCGCGTCACCTTT
CGGGGAGCGGCGACTTCGGTCTTGTTGATTTCAACGGCAAGCGGAGCGAG
CCAGGTTCCCTCGCTGGGCTTCTTCGAGCAGACGCTGCTTACCACCGCCG
GGCTGGACTTCGACAGCGAGGCCGCCTTTGCGTTTGCGTCCGCCTGGCAG
GCCGGGGACAGGCAGGGTAGAAGCGCTCCCTATCTCTCGTGCGTCAAGCA
TGGTGAGGGCAGGCACGCCTACAGGAAGCTCGAGGGCTTCCTTGGCGCGC
GCGCGGTGAGGCCTGTCTCGTCGACGGCGACTCATGGCGCGTGCTTCATG
GTGACCGCCTCGCCAGCTGAGGCTACCCAGCTCTCGTCATGGGAAGACTT
GACTACCTTCGGGGCGTTTCCGGCTGCCCTCAAGATTGCGCCCGGGCTCC
TCGACCATGGCAGCTGCGACGGCTCAGCATCAGCCCGTGACGCAACAACA
ACAACAACCAGTGATTGTTCTGTCGAGCGGCTGTCAACGACGCACGGCGC
GTTGATGCAGGCGGACAGCGCCCACGGTCTCATGGTCGAGCTCTCGCCGG
GGACTCTGCCCTCGCACGGTGGTGGCGATGGCAACGAAGCGAAGGCTGAT
GAATTCATCCAAGAGTTGCTCAACAGCCTGTCTTCGCCCTCGCTGGATCT
TCACGCCATGACCTGTTGGTCTGATCTTGTCATGAAGGGCGGTGACCACC
TCTTCAGCGCGGCGGGGGCCCTCCGCGGGCGCGAGTGGAGCAGGGCGGCC
ACACTGGTGAACGAGCGGAGCGAGTCGGAGCTGGAGACTCCGAGCCAAGT
GTGCGGGTGGGAGCAAGTTGTTGTCCATCATGCTGCGAACGACGTGCTGC
TCGTGGCTGATACCTTCTGGTTTGGGTAA
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protein sequence of EsuBft858_2a-0001

>EsuBft858_2 ID=EsuBft858_2|Name=EsuBft858_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=302bp
MHRNIMRVTFRGAATSVLLISTASGASQVPSLGFFEQTLLTTAGLDFDSE
AAFAFASAWQAGDRQGRSAPYLSCVKHGEGRHAYRKLEGFLGARAVRPVS
STATHGACFMVTASPAEATQLSSWEDLTTFGAFPAALKIAPGLLDHGSCD
GSASARDATTTTTSDCSVERLSTTHGALMQADSAHGLMVELSPGTLPSHG
GGDGNEAKADEFIQELLNSLSSPSLDLHAMTCWSDLVMKGGDHLFSAAGA
LRGREWSRAATLVNERSESELETPSQVCGWEQVVVHHAANDVLLVADTFW
FG
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mRNA from alignment at Scaffold_455:23129..24823+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft858_2a-0001 ID=EsuBft858_2a-0001|Name=EsuBft858_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1695bp|location=Sequence derived from alignment at Scaffold_455:23129..24823+ (Ectocarpus subulatus male Bft15b)
TGTCTCCACCCGGCACATACACAAAACATCCCCTGGCTTGCCCTGGCCGT
GAAAGTATCTCCCTGGGGGCACACTGAAGTCGCAGCAGACACCGTCAGCC
TTGCGGTGGAGTGCCCTTGCCTCTCTTGCACAAGTAAAGACGCACAGCAG
TAGAGAGTAGAGAGAGATCTATGCATAGAAACATCATGCGCGTCACCTTT
CGGGGAGCGGCGACTTCGGTCTTGTTGATTTCAACGGCAAGCGGAGCGAG
CCAGGTTCCCTCGCTGGGCTTCTTCGAGCAGACGCTGCTTACCACCGCCG
GGCTGGACTTCGACAGCGAGGCCGCCTTTGCGTTTGCGTCCGCCTGGCAG
GCCGGGGACAGGCAGGGTAGAAGCGCTCCCTATCTCTCGTGCGTCAAGCA
TGGTGAGGGCAGGCACGCCTACAGGAAGCTCGAGGGCTTCCTTGGCGCGC
GCGCGGTGAGGCCTGTCTCGTCGACGGCGACTCATGGCGCGTGCTTCATG
GTGACCGCCTCGCCAGCTGAGGCTACCCAGCTCTCGTCATGGGAAGACTT
GACTACCTTCGGGGCGTTTCCGGCTGCCCTCAAGATTGCGCCCGGGCTCC
TCGACCATGGCAGCTGCGACGGCTCAGCATCAGCCCGTGACGCAACAACA
ACAACAACCAGTGATTGTTCTGTCGAGCGGCTGTCAACGACGCACGGCGC
GTTGATGCAGGCGGACAGCGCCCACGGTCTCATGGTCGAGCTCTCGCCGG
GGACTCTGCCCTCGCACGGTGGTGGCGATGGCAACGAAGCGAAGGCTGAT
GAATTCATCCAAGAGTTGCTCAACAGCCTGTCTTCGCCCTCGCTGGATCT
TCACGCCATGACCTGTTGGTCTGATCTTGTCATGAAGGGCGGTGACCACC
TCTTCAGCGCGGCGGGGGCCCTCCGCGGGCGCGAGTGGAGCAGGGCGGCC
ACACTGGTGAACGAGCGGAGCGAGTCGGAGCTGGAGACTCCGAGCCAAGT
GTGCGGGTGGGAGCAAGTTGTTGTCCATCATGCTGCGAACGACGTGCTGC
TCGTGGCTGGTGAGTTCGGTCGGACGCGTTTGTTCCTACTCTCCCTCTCC
CCTCGCCTCTTTCTGTGTTTGCCTCTCATGTGCCGCCCCTTGTGTTTCTC
ATACGGAAAGAAGGAAAAACACTCACACGAAAAAGAAAAAATACAGGAGT
GTGGCGTGGATGTGTGGATATGCTTGGTAGTAGTGGTACGCATACTGATG
CTGTTGTTTCATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCC
TGCTGCTCGTGTTGAGCCATTTATCTATTTCTTAGTACTGTTGATCGATC
AACTCCGCCCAACAACATTTGTGGAGCTTTTCTTGATTCTGTTCGTTTCC
CGAACCGAACACACCGGAAGTGTTGAAGTGTTGAAGATTTTCGGGTGGTT
TTATTATCCCCGATGTTTCTGCAAGCAACTTGCCACTTGCAACCGCTTGA
CATGCTCGCAGCAGCAGCAGCAGCGAGCGGATCATGTCACGAAATTTGGG
TATCGCTTATCACCCCTCGTTGTTCTGGGTCAGCTTGCGACCACGTCGTT
TATTGCGTTCATTAACAAGTACCGAGTTGCAGTGTACGATGCGTGGGAGA
ATGGGAGTAGGGAATGGATGTACAGATACCTTCTGGTTTGGGTAA
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Coding sequence (CDS) from alignment at Scaffold_455:23129..24823+

>EsuBft858_2a-0001 ID=EsuBft858_2a-0001|Name=EsuBft858_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=909bp|location=Sequence derived from alignment at Scaffold_455:23129..24823+ (Ectocarpus subulatus male Bft15b)
ATGCATAGAAACATCATGCGCGTCACCTTTCGGGGAGCGGCGACTTCGGT
CTTGTTGATTTCAACGGCAAGCGGAGCGAGCCAGGTTCCCTCGCTGGGCT
TCTTCGAGCAGACGCTGCTTACCACCGCCGGGCTGGACTTCGACAGCGAG
GCCGCCTTTGCGTTTGCGTCCGCCTGGCAGGCCGGGGACAGGCAGGGTAG
AAGCGCTCCCTATCTCTCGTGCGTCAAGCATGGTGAGGGCAGGCACGCCT
ACAGGAAGCTCGAGGGCTTCCTTGGCGCGCGCGCGGTGAGGCCTGTCTCG
TCGACGGCGACTCATGGCGCGTGCTTCATGGTGACCGCCTCGCCAGCTGA
GGCTACCCAGCTCTCGTCATGGGAAGACTTGACTACCTTCGGGGCGTTTC
CGGCTGCCCTCAAGATTGCGCCCGGGCTCCTCGACCATGGCAGCTGCGAC
GGCTCAGCATCAGCCCGTGACGCAACAACAACAACAACCAGTGATTGTTC
TGTCGAGCGGCTGTCAACGACGCACGGCGCGTTGATGCAGGCGGACAGCG
CCCACGGTCTCATGGTCGAGCTCTCGCCGGGGACTCTGCCCTCGCACGGT
GGTGGCGATGGCAACGAAGCGAAGGCTGATGAATTCATCCAAGAGTTGCT
CAACAGCCTGTCTTCGCCCTCGCTGGATCTTCACGCCATGACCTGTTGGT
CTGATCTTGTCATGAAGGGCGGTGACCACCTCTTCAGCGCGGCGGGGGCC
CTCCGCGGGCGCGAGTGGAGCAGGGCGGCCACACTGGTGAACGAGCGGAG
CGAGTCGGAGCTGGAGACTCCGAGCCAAGTGTGCGGGTGGGAGCAAGTTG
TTGTCCATCATGCTGCGAACGACGTGCTGCTCGTGGCTGATACCTTCTGG
TTTGGGTAA
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