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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 6500.XP_005100548.1 |
| ProteomeId | EsuBft854_11 |
| Protein domains | Coil |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 33208|Metazoa |
| Length | 364 |
| Evalue | 5.94e-05 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3E41I@33213|Bilateria |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft854_11a-0001 ID=EsuBft854_11a-0001|Name=EsuBft854_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3644bp|location=Sequence derived from alignment at Scaffold_617:135663..139407- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCACACACGTATCGACCGTATCGACCTCGAGCGGTTAACGAAGGACAA ACACCTACGGGTCGCCTTCCAAAACAGGGCCTCCGGCCGCCCTCCGCCCA CGGCGCTCGGGCGGCCAACGGGAGAGACCGCCGCCGAGCTGACGGCTACG GTGATGTCGGCCGCTGCTGAGACCGCGCCGATGGCGAGGTGCGAACGAGG GCAGAGAGGCTGGTACACGAGCGAAGCGCAGCACGAGATCTCCCAAGCGT CTAAAGAGATTAAGGCGGCCCAGCAGCAACTGCGTGGGGCCTCAAAGAAC AGCGCCTTCGAGGCGACCCTGAAGGCGATGCTCAAGGCGGCGCGGAAGAA GCGCAGCATCGCAAGGTTGAGAGCACTGGAAACGTTCTTCGAGGGCTATG TAAGGCAGCTCGAGAAGAAGAGCCGCGAGGGGGATCAGCCGGGTTTCTAC AGGCACCTGAAGATGATCGACGTCGAAGGTAAGAGGTCGTTCACCTCTCA GAACATCAAGGACGAGGACGGCAAGGTCCTTCGGGACCCCACGTTTATTC GCCAACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACCAAGTCGCCG ACCATCGACCTGCATGCGGCTGACAAGGTCAAGCGGTGGCCCACGTGCGT GCCACTCGACGACATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNTCTCCGCGGACGGGAAGGCCGACCGGGAGATCACGAGCCGCAGCT GCCGAGCGTGGAAGTGCTACCGCCGGAACAGTGCTTCGATGCACGACAGG CGACGGGCCGACAGCCAGCTCAAGATTCGGCTGCTCCAGGCTGAAGTGCT GGAGACTCTCCTATATGGGTGCGCCTCGTGGAGCCTAACAGCGGAGAACT ACACGAAGCCCAATGGGACCCACCGCCAGTTCCTTACACGGTGCATCGGC TGGAGCAAGCGGAAACGCTCAGACCGCCTCCTGCTGTCCTATGCCCAGGC CGTCATCCAGGCAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAAC GGAGACTGTGTTTCGCGGGCTTCGACGGTCGCCTCCCCAAGCGCAAGCTG TTAGGAGCGATGGCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGA CTGGGTGTCTCGTCTAGGAGAGGACCTCGTGGCCTTCAACATGGGAGACG AAAAGGAAGGGGGGAAACTAAAAGAGAGCGCCAAGGACCTGGAGGTGTGG TACAACAAGGTCCAGGACGGGGCGGCATGGTTCATGAGGAAATGGCACAG GCAGGAGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAG CAGAGAGTACGGTCATCTCAGGACCGAAGAGAAAGAGAGACGGGGAAGCG GCGATGGGGGGGGAGAAACGGCGACCGGGCACTGCTGTAGAAGCGAGTGG GGCGGCCGAGGCAGCACTTGTGGCGAACTATGTACCCGGCTGATGTTGTT GCGCCCTGTTTCCCTCCCTGCTGTATGCTATACTCCTTTGTGTATGTCCT GTGCATTGCCTTCGGCCTCTGTGCTGTGTTTCTATTTTTTCATGTCTTCC CTGCCTACTCTGCTGTGTTGGGTACCTTGATCTCGCTTTTGCTATTGCCT TTGTTTTTGTACATCTGGCTGCCTGCCCATCTGCCGCCTCTTTGTCCCGT TTGCTCCGATACTCCCATGCCCTGGTGCCTAGTGCCTGGTGCTGGTACGT TACCCTTTGATTTTTCTTTGGGTGGGTGTGGGAAGCGTCCTCCTTTATTT TGTTTCTGTTTTATTTCGATCGGTTTCCGAGGGCTCTTTTCTCGAACGGC CGGTGCGGTACCTTTGTTTTCTTTCTATCATTTTGTTTTCTTTTTCCGAG TGGTTTGTACCCTATTTTTGTTTTGTTTCCCCGCGGCGTCGTATGTGCCG GGTGTTGAGACCACGGGCTCCCCATTTTTTGTGGACTATAGAGCTAATGT GAGAAACAACAACAACAACAACAACANTCCCTGCGGCGTCGTTTGTGCCG GGTTTTGAGACCACGGGCTCCCCATTTTTTGTGGACTATTTTCAAGGAGT AATGCCGTGGGAGCTTGCTCATAGAGATAGATGAAGGTTCTGTCGTTGAC ACGCTTGTCCACGACCATGTTGAGATGGGAAAGTTGCTTGTTATTGCTGA GAGAACGATCAGTAAGGGTCTGAGATGAAGTGGGGATCCAACTTCATCCC AGGGGGTACACAGAGTAGACAATTCTAAGGGGATAGGGGTCAGAAGGGTA TACCTCTTGACCGACCCGCATCATATCAACAATAAGATGTACCCTATTCA TGCTAGCTAGCAGCCACACTCCTTAACACTATAGAGCTAATGTGAGAAAC AACACCAACAAACAAACTAAAACCTACATAGCGGCCATTTGCAGCCCACA AGAGGATGATGATCAGAAAAACAAGAACCCCAGCTTCGGCCGAAACTAAC CATTTATTATTCGTCTTCGTCACGCTGTCGAGCACAGGATTTTTAATAAG GACGGCGGCACATTATTAGGAGAGCAAATCAAAAGATATGCATTTCGGAG CGTAACTTCGCAATATGATGCGCAGCACAGCATACGTTAGCGCAACTTAA CGACAGGGCAAACTTTAAAGGCCGTCACGATGAAAAATATATATCAAATT GCTTGTCGTGCATCTCAGCAGAGATTCAAAATCGGAAATAATGCCGAGAA ACATAGGGCCAACATCGGTATCCCCACTTCTCGGCCTGTAACTAATATGA GACTAGACTACACAGTTGACGCGAAGTTGGAAAATAAAAGTAATGAAATA ACAGGCGTTCGACATGTAGTTAGTGTCGTCATCGTACTTGTAAGAAGCGC CGCGTGATATGCAGGGCGTGGTCTTTCTCATCATCTAATCCAATCTAGTC TTTATTCTCTCGTGAAAATTCGCCTCATCATTTTCCTGACTGACCTGACG ACCTGACCGAGTATGTGTCTTGGACTAGACTATTTATTTGCGGGCCGCTC AGTGAACTGGGCACATCGCACGGGAATGTTTAGTATAGTATAGTATCTTC AGTAGAGTATGGAGAACCTGTACTAACGGCTGAGTAGAGTGGAGTATGAG AGAGGTGAATCCTCTACTCACCTGAGTAGAGTACAGAGGTCAGGTACTGA ACTCAAAGAGTATGTTTAGTAGAGTATGAAAAGCCGTACTAAACCGCAAG AGAACTTTGAGTAGAGTATGAAGAGCCATACTAAAATGTGAGTATGAGTA GAGTATGAAAAGCCGTACTATACTCAAAAAAATGTTTAGTAGAGTATTGA AGAGCCGTACTTACAAAAATTTTAGTTTAGTACGAAGAGCCGTA back to topprotein sequence of EsuBft854_11a-0001 >EsuBft854_11 ID=EsuBft854_11|Name=EsuBft854_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=580bp
MHTRIDRIDLERLTKDKHLRVAFQNRASGRPPPTALGRPTGETAAELTAT VMSAAAETAPMARCERGQRGWYTSEAQHEISQASKEIKAAQQQLRGASKN SAFEATLKAMLKAARKKRSIARLRALETFFEGYVRQLEKKSREGDQPGFY RHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSP TIDLHAADKVKRWPTCVPLDDIPXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXSADGKADREITSRSCRAWKCYRRNSASMHDR RRADSQLKIRLLQAEVLETLLYGCASWSLTAENYTKPNGTHRQFLTRCIG WSKRKRSDRLLLSYAQAVIQAGCEETIEATVRKRRLCFAGFDGRLPKRKL LGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKLKESAKDLEVW YNKVQDGAAWFMRKWHRQEAEASAKRQRAREAEAESTVISGPKRKRDGEA AMGGEKRRPGTAVEASGAAEAALVANYVPG back to topmRNA from alignment at Scaffold_617:135663..139407- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft854_11a-0001 ID=EsuBft854_11a-0001|Name=EsuBft854_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3745bp|location=Sequence derived from alignment at Scaffold_617:135663..139407- (Ectocarpus subulatus male Bft15b) ATGCACACACGTATCGACCGTATCGACCTCGAGCGGTTAACGAAGGACAA
ACACCTACGGGTCGCCTTCCAAAACAGGGCCTCCGGCCGCCCTCCGCCCA
CGGCGCTCGGGCGGCCAACGGGAGAGACCGCCGCCGAGCTGACGGCTACG
GTGATGTCGGCCGCTGCTGAGACCGCGCCGATGGCGAGGTGCGAACGAGG
GCAGAGAGGCTGGTACACGAGCGAAGCGCAGCACGAGATCTCCCAAGCGT
CTAAAGAGATTAAGGCGGCCCAGCAGCAACTGCGTGGGGCCTCAAAGAAC
AGCGCCTTCGAGGCGACCCTGAAGGCGATGCTCAAGGCGGCGCGGAAGAA
GCGCAGCATCGCAAGGTTGAGAGCACTGGAAACGTTCTTCGAGGGCTATG
TAAGGCAGCTCGAGAAGAAGAGCCGCGAGGGGGATCAGCCGGGTTTCTAC
AGGCACCTGAAGATGATCGACGTCGAAGGTAAGAGGTCGTTCACCTCTCA
GAACATCAAGGACGAGGACGGCAAGGTCCTTCGGGACCCCACGTTTATTC
GCCAACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACCAAGTCGCCG
ACCATCGACCTGCATGCGGCTGACAAGGTCAAGCGGTGGCCCACGTGCGT
GCCACTCGACGACATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTCTCCGCGGACGGGAAGGCCGACCGGGAGATCACGAGCCGCAGCT
GCCGAGCGTGGAAGTGCTACCGCCGGAACAGTGCTTCGATGCACGACAGG
CGACGGGCCGACAGCCAGCTCAAGATTCGGCTGCTCCAGGCTGAAGTGCT
GGAGACTCTCCTATATGGGTGCGCCTCGTGGAGCCTAACAGCGGAGAACT
ACACGAAGCCCAATGGGACCCACCGCCAGTTCCTTACACGGTGCATCGGC
TGGAGCAAGCGGAAACGCTCAGACCGCCTCCTGCTGTCCTATGCCCAGGC
CGTCATCCAGGCAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAAC
GGAGACTGTGTTTCGCGGGCTTCGTAATGCGCATGGAGGACAGCCGCCTC
CCCAAGCGCATGCTGTTAGGAGCNCCGTGCGCAAACGGAGACTGTGTTTC
GCGGGCTTTGTTATCCGCATGGAGGACGGTCGCCTCCCCAAGCGCAAGCT
GTTAGGAGCGATGGCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCG
ACTGGGTGTCTCGTCTAGGAGAGGACCTCGTGGCCTTCAACATGGGAGAC
GAAAAGGAAGGGGGGAAACTAAAAGAGAGCGCCAAGGACCTGGAGGTGTG
GTACAACAAGGTCCAGGACGGGGCGGCATGGTTCATGAGGAAATGGCACA
GGCAGGAGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAA
GCAGAGAGTACGGTCATCTCAGGACCGAAGAGAAAGAGAGACGGGGAAGC
GGCGATGGGGGGGGAGAAACGGCGACCGGGCACTGCTGTAGAAGCGAGTG
GGGCGGCCGAGGCAGCACTTGTGGCGAACTATGTACCCGGCTGATGTTGT
TGCGCCCTGTTTCCCTCCCTGCTGTATGCTATACTCCTTTGTGTATGTCC
TGTGCATTGCCTTCGGCCTCTGTGCTGTGTTTCTATTTTTTCATGTCTTC
CCTGCCTACTCTGCTGTGTTGGGTACCTTGATCTCGCTTTTGCTATTGCC
TTTGTTTTTGTACATCTGGCTGCCTGCCCATCTGCCGCCTCTTTGTCCCG
TTTGCTCCGATACTCCCATGCCCTGGTGCCTAGTGCCTGGTGCTGGTACG
TTACCCTTTGATTTTTCTTTGGGTGGGTGTGGGAAGCGTCCTCCTTTATT
TTGTTTCTGTTTTATTTCGATCGGTTTCCGAGGGCTCTTTTCTCGAACGG
CCGGTGCGGTACCTTTGTTTTCTTTCTATCATTTTGTTTTCTTTTTCCGA
GTGGTTTGTACCCTATTTTTGTTTTGTTTCCCCGCGGCGTCGTATGTGCC
GGGTGTTGAGACCACGGGCTCCCCATTTTTTGTGGACTATAGAGCTAATG
TGAGAAACAACAACAACAACAACAACANTCCCTGCGGCGTCGTTTGTGCC
GGGTTTTGAGACCACGGGCTCCCCATTTTTTGTGGACTATTTTCAAGGAG
TAATGCCGTGGGAGCTTGCTCATAGAGATAGATGAAGGTTCTGTCGTTGA
CACGCTTGTCCACGACCATGTTGAGATGGGAAAGTTGCTTGTTATTGCTG
AGAGAACGATCAGTAAGGGTCTGAGATGAAGTGGGGATCCAACTTCATCC
CAGGGGGTACACAGAGTAGACAATTCTAAGGGGATAGGGGTCAGAAGGGT
ATACCTCTTGACCGACCCGCATCATATCAACAATAAGATGTACCCTATTC
ATGCTAGCTAGCAGCCACACTCCTTAACACTATAGAGCTAATGTGAGAAA
CAACACCAACAAACAAACTAAAACCTACATAGCGGCCATTTGCAGCCCAC
AAGAGGATGATGATCAGAAAAACAAGAACCCCAGCTTCGGCCGAAACTAA
CCATTTATTATTCGTCTTCGTCACGCTGTCGAGCACAGGATTTTTAATAA
GGACGGCGGCACATTATTAGGAGAGCAAATCAAAAGATATGCATTTCGGA
GCGTAACTTCGCAATATGATGCGCAGCACAGCATACGTTAGCGCAACTTA
ACGACAGGGCAAACTTTAAAGGCCGTCACGATGAAAAATATATATCAAAT
TGCTTGTCGTGCATCTCAGCAGAGATTCAAAATCGGAAATAATGCCGAGA
AACATAGGGCCAACATCGGTATCCCCACTTCTCGGCCTGTAACTAATATG
AGACTAGACTACACAGTTGACGCGAAGTTGGAAAATAAAAGTAATGAAAT
AACAGGCGTTCGACATGTAGTTAGTGTCGTCATCGTACTTGTAAGAAGCG
CCGCGTGATATGCAGGGCGTGGTCTTTCTCATCATCTAATCCAATCTAGT
CTTTATTCTCTCGTGAAAATTCGCCTCATCATTTTCCTGACTGACCTGAC
GACCTGACCGAGTATGTGTCTTGGACTAGACTATTTATTTGCGGGCCGCT
CAGTGAACTGGGCACATCGCACGGGAATGTTTAGTATAGTATAGTATCTT
CAGTAGAGTATGGAGAACCTGTACTAACGGCTGAGTAGAGTGGAGTATGA
GAGAGGTGAATCCTCTACTCACCTGAGTAGAGTACAGAGGTCAGGTACTG
AACTCAAAGAGTATGTTTAGTAGAGTATGAAAAGCCGTACTAAACCGCAA
GAGAACTTTGAGTAGAGTATGAAGAGCCATACTAAAATGTGAGTATGAGT
AGAGTATGAAAAGCCGTACTATACTCAAAAAAATGTTTAGTAGAGTATTG
AAGAGCCGTACTTACAAAAATTTTAGTTTAGTACGAAGAGCCGTA back to topCoding sequence (CDS) from alignment at Scaffold_617:135663..139407- >EsuBft854_11a-0001 ID=EsuBft854_11a-0001|Name=EsuBft854_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1743bp|location=Sequence derived from alignment at Scaffold_617:135663..139407- (Ectocarpus subulatus male Bft15b) ATGCACACACGTATCGACCGTATCGACCTCGAGCGGTTAACGAAGGACAA ACACCTACGGGTCGCCTTCCAAAACAGGGCCTCCGGCCGCCCTCCGCCCA CGGCGCTCGGGCGGCCAACGGGAGAGACCGCCGCCGAGCTGACGGCTACG GTGATGTCGGCCGCTGCTGAGACCGCGCCGATGGCGAGGTGCGAACGAGG GCAGAGAGGCTGGTACACGAGCGAAGCGCAGCACGAGATCTCCCAAGCGT CTAAAGAGATTAAGGCGGCCCAGCAGCAACTGCGTGGGGCCTCAAAGAAC AGCGCCTTCGAGGCGACCCTGAAGGCGATGCTCAAGGCGGCGCGGAAGAA GCGCAGCATCGCAAGGTTGAGAGCACTGGAAACGTTCTTCGAGGGCTATG TAAGGCAGCTCGAGAAGAAGAGCCGCGAGGGGGATCAGCCGGGTTTCTAC AGGCACCTGAAGATGATCGACGTCGAAGGTAAGAGGTCGTTCACCTCTCA GAACATCAAGGACGAGGACGGCAAGGTCCTTCGGGACCCCACGTTTATTC GCCAACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACCAAGTCGCCG ACCATCGACCTGCATGCGGCTGACAAGGTCAAGCGGTGGCCCACGTGCGT GCCACTCGACGACATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNTCTCCGCGGACGGGAAGGCCGACCGGGAGATCACGAGCCGCAGCT GCCGAGCGTGGAAGTGCTACCGCCGGAACAGTGCTTCGATGCACGACAGG CGACGGGCCGACAGCCAGCTCAAGATTCGGCTGCTCCAGGCTGAAGTGCT GGAGACTCTCCTATATGGGTGCGCCTCGTGGAGCCTAACAGCGGAGAACT ACACGAAGCCCAATGGGACCCACCGCCAGTTCCTTACACGGTGCATCGGC TGGAGCAAGCGGAAACGCTCAGACCGCCTCCTGCTGTCCTATGCCCAGGC CGTCATCCAGGCAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAAC GGAGACTGTGTTTCGCGGGCTTCGACGGTCGCCTCCCCAAGCGCAAGCTG TTAGGAGCGATGGCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGA CTGGGTGTCTCGTCTAGGAGAGGACCTCGTGGCCTTCAACATGGGAGACG AAAAGGAAGGGGGGAAACTAAAAGAGAGCGCCAAGGACCTGGAGGTGTGG TACAACAAGGTCCAGGACGGGGCGGCATGGTTCATGAGGAAATGGCACAG GCAGGAGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAG CAGAGAGTACGGTCATCTCAGGACCGAAGAGAAAGAGAGACGGGGAAGCG GCGATGGGGGGGGAGAAACGGCGACCGGGCACTGCTGTAGAAGCGAGTGG GGCGGCCGAGGCAGCACTTGTGGCGAACTATGTACCCGGCTGA back to top
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