EsuBft851_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft851_6a-0001
Unique NameEsuBft851_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_441contigScaffold_441:51392..54727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6087.XP_002157234.2
ProteomeIdEsuBft851_6
Protein domainsIPR006600
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl33208|Metazoa
Length333
Evalue2.61e-07
EggNOG OGsCOG5059@1|root,KOG0244@2759|Eukaryota,38CGP@33154|Opisthokonta,3BCNH@33208|Metazoa
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameKIF21B
KEGG koko:K10395
GOsGO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005871,GO:0005875,GO:0005886,GO:0006928,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0071944
Descriptionmicrotubule motor activity
COG categoryZ
BRITEko00000,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft851_6aEsuBft851_6aEctocarpus subulatus male Bft15bgeneScaffold_441 51392..54727 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft851_6a-0001-exonEsuBft851_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_441 51392..54727 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft851_6a-0001-exonagat-three_prime_utr-22265Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_441 51392..54412 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft851_6a-0001-cdsEsuBft851_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_441 54413..54727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft851_6a-0001EsuBft851_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_441 54413..54727 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft851_6a-0001 ID=EsuBft851_6a-0001|Name=EsuBft851_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3336bp|location=Sequence derived from alignment at Scaffold_441:51392..54727- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGAAAAAGATGTGCTGCTGTACGCTGGTCGGAACTATATTCCTCT
CACGAGGAACGACCTGAAGGAGCGTGTGAGACAGCTCTGCAACGACGGCC
GGCCGATCCCATGGGACCCCGACAAGGGCCCGGGGAAGTCGTGGTTGCAG
GGCTTCCTCCGAAGGCACGATCGCATCAGCCTTCGACTCGCCCGCATCTA
CGAGGCCAACAGGATGACCTCGCCGGAAGATGATCGTCTGCACAACTTCT
ACAAGTTCTGGCAGGAGTTCGTCAACGAGCACAAGCCAGCACCCGACCAC
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TCTATGTGCTTTTTTTTTTCTTCTTGTCCAACGCGTTTTCTGCAACGTTT
ACTTCGTTTCTCTCAACCGGCGTCTCGTGGGGGTTGAGTTGTGGGTGTAA
ATTGTTCATTTAACTGTAGCAGATTTTTTCGGAATTTTCTGCCGTACAAG
CCGAAAAAGGGGGGAAAGTACCCCATGTCTGGACAGGCATAATGTCGTCC
GTAGGCATTCGATTGCCGCAATTTTTTTTTTGTGAGTCCGAGTAGGACGC
ATACAAGTCATTAGTTCATCAAATTACTACGTTTGCATGGTTTCAAGGCA
AGAGAACACGCAGTACCACCCAAAAGGGGTATATTCCGTTCCTCAAAACT
GGGCCGAAAAACCGGGGATATGGGCATTTTGTCCCCGGGTGTGCACCAAT
TTATTTTATTTTTTTTATCGAACATACGTCATACTAAGAGCCTGTGTACC
AAATTTCAGGTCGTGGAACGCTTTAGAACGTGCGTATCCGGCCACTACCG
GAAAGTGGTCCTTAATACCCCCCCCCCTTCTTTTGACCCAAATTTTACCT
AGAACGTGAGGTATACTTCAAGGTCTTATGTATACTCGCCCTCACTTTTT
TCAATTTTTCTTTCTTTGTCATGTAGTCTATGTTATAGGCTATCGTATGA
TACCTTGATCTCTTCATGAATCATCTTGAAACCAGAGAACAAGCTGCCTA
AGTGGGGGGTGCCTTAAGGGGTCCTTAATACCCGTC
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protein sequence of EsuBft851_6a-0001

>EsuBft851_6 ID=EsuBft851_6|Name=EsuBft851_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=105bp
MREKDVLLYAGRNYIPLTRNDLKERVRQLCNDGRPIPWDPDKGPGKSWLQ
GFLRRHDRISLRLARIYEANRMTSPEDDRLHNFYKFWQEFVNEHKPAPDH
VWNTX
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mRNA from alignment at Scaffold_441:51392..54727-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft851_6a-0001 ID=EsuBft851_6a-0001|Name=EsuBft851_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3336bp|location=Sequence derived from alignment at Scaffold_441:51392..54727- (Ectocarpus subulatus male Bft15b)
ATGCGCGAAAAAGATGTGCTGCTGTACGCTGGTCGGAACTATATTCCTCT
CACGAGGAACGACCTGAAGGAGCGTGTGAGACAGCTCTGCAACGACGGCC
GGCCGATCCCATGGGACCCCGACAAGGGCCCGGGGAAGTCGTGGTTGCAG
GGCTTCCTCCGAAGGCACGATCGCATCAGCCTTCGACTCGCCCGCATCTA
CGAGGCCAACAGGATGACCTCGCCGGAAGATGATCGTCTGCACAACTTCT
ACAAGTTCTGGCAGGAGTTCGTCAACGAGCACAAGCCAGCACCCGACCAC
GTTTGGAACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TCTATGTGCTTTTTTTTTTCTTCTTGTCCAACGCGTTTTCTGCAACGTTT
ACTTCGTTTCTCTCAACCGGCGTCTCGTGGGGGTTGAGTTGTGGGTGTAA
ATTGTTCATTTAACTGTAGCAGATTTTTTCGGAATTTTCTGCCGTACAAG
CCGAAAAAGGGGGGAAAGTACCCCATGTCTGGACAGGCATAATGTCGTCC
GTAGGCATTCGATTGCCGCAATTTTTTTTTTGTGAGTCCGAGTAGGACGC
ATACAAGTCATTAGTTCATCAAATTACTACGTTTGCATGGTTTCAAGGCA
AGAGAACACGCAGTACCACCCAAAAGGGGTATATTCCGTTCCTCAAAACT
GGGCCGAAAAACCGGGGATATGGGCATTTTGTCCCCGGGTGTGCACCAAT
TTATTTTATTTTTTTTATCGAACATACGTCATACTAAGAGCCTGTGTACC
AAATTTCAGGTCGTGGAACGCTTTAGAACGTGCGTATCCGGCCACTACCG
GAAAGTGGTCCTTAATACCCCCCCCCCTTCTTTTGACCCAAATTTTACCT
AGAACGTGAGGTATACTTCAAGGTCTTATGTATACTCGCCCTCACTTTTT
TCAATTTTTCTTTCTTTGTCATGTAGTCTATGTTATAGGCTATCGTATGA
TACCTTGATCTCTTCATGAATCATCTTGAAACCAGAGAACAAGCTGCCTA
AGTGGGGGGTGCCTTAAGGGGTCCTTAATACCCGTC
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Coding sequence (CDS) from alignment at Scaffold_441:51392..54727-

>EsuBft851_6a-0001 ID=EsuBft851_6a-0001|Name=EsuBft851_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=315bp|location=Sequence derived from alignment at Scaffold_441:51392..54727- (Ectocarpus subulatus male Bft15b)
ATGCGCGAAAAAGATGTGCTGCTGTACGCTGGTCGGAACTATATTCCTCT
CACGAGGAACGACCTGAAGGAGCGTGTGAGACAGCTCTGCAACGACGGCC
GGCCGATCCCATGGGACCCCGACAAGGGCCCGGGGAAGTCGTGGTTGCAG
GGCTTCCTCCGAAGGCACGATCGCATCAGCCTTCGACTCGCCCGCATCTA
CGAGGCCAACAGGATGACCTCGCCGGAAGATGATCGTCTGCACAACTTCT
ACAAGTTCTGGCAGGAGTTCGTCAACGAGCACAAGCCAGCACCCGACCAC
GTTTGGAACACNNNN
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