EsuBft851_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft851_10a-0001
Unique Name	EsuBft851_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_441	contig	Scaffold_441:81433..83612 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LRU3
ProteomeId	EsuBft851_10
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	207
Hectar predicted targeting category	other localisation
Evalue	1.99e-25
EggNOG OGs	KOG0379@1\|root,KOG0379@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	nitrile biosynthetic process
COG category	P

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft851_10a	EsuBft851_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_441 81433..83612 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft851_10a-0001	EsuBft851_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_441 81473..81718 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft851_10a-0001-exon	EsuBft851_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 81433..82568 +
EsuBft851_10a-0001-exon	agat-exon-101737	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 82678..83612 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft851_10a-0001-exon	agat-five_prime_utr-14407	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_441 81433..81472 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft851_10a-0001-cds	EsuBft851_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_441 81473..81718 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft851_10a-0001-exon	agat-three_prime_utr-22260	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_441 81719..82568 +
EsuBft851_10a-0001-exon	agat-three_prime_utr-22261	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_441 82678..83612 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_441:81433..83612+
coding sequence from alignment at Scaffold_441:81433..83612+

spliced messenger RNA

>EsuBft851_10a-0001 ID=EsuBft851_10a-0001|Name=EsuBft851_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2071bp|location=Sequence derived from alignment at Scaffold_441:81433..83612+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTCCTGTGACGGAAAGCACGGACGAGACAGCAGGTGGTCATGTCAGCCC
TGGAGGGCCAACAATGGTACATCGAGGAAATACCCCCCGTAGAAGACAAC
GACGAGCTGGGCGATGTGGTATGTGAACCTTCTGTGACTGTCGAAAGCGA
ACCTGTTGATTCCGCGCAGGAGGCCGTGATCGCGCTTGATATCGGTTCAG
CTGCGACTTTGGATACACAACAACGATCGAAGGTGTGTGCCTATAGCAGT
ACAGGATATGATGCTGATACAGCTAAGAGGTACTGACATATACCCAAGAG
TTCAGCTTGGAGTGTCACTAACAATATTTTGTCGTCAATTTTTAGGAGTT
TTTTCCGCGCGCGAAGCGCGCGTGCGAAAAAAACCCCGGAGCGATAGCGG
AGTTTGTTTTTCGCAAAAAAACTTTGGATGGGTCCTTTTTGGTTCCCCGC
CTGGGTTCTGCGCACGTTGAATAACACCGCCCGTCAGCCCGACCCCTGAA
TTAATTACTGTTCTCAAATTGATGTCCATGTGTGTGTTCGCACCACCTTT
GCACCGATAAACAAGCCGTTTGAGGATCGTTTTCGGTGCGGAAAAGTGCA
CAAGCTGTAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNACGCATACGGAGTGCTGACAACAACGATTCGCATCAACA
ACATCGCATCAACAACGTTTTGGGTGTGTGTACCAAAACAAAAGCAACAC
ATACTCACGGGGGGCGCACGACCCAGCCTACTGCAGGCCGCATCTAGACT
ACAAGCGTACCTCTGCCATGGCGTAAAACATGTGTTATGTAAATAGTGTA
GTGGCGCTGGTGGTATCTTGATCTTTCAACGTTCCCTTCGAAGATTCAAG
GTACCGTACACAAGCATCAGCAGTACTGGGTCGCAAGCGAAGGACAACAG
AGTGTGGGGGGGGTGTGCAACTCTTCAGGAGTGTATTCTGAGGCAATGCG
GCATGAGGGCTCGTTAACGATCGTCTTGTGTACCTACCCCGTATAGTTTC
TCTCACTGCATGTATTTACGGAGCTGCTGTAAGCACAGCAGCTACACTTC
TGCGGATAAATGAAAGGTTAGAAACTTTGCAGCAAGGGAGGCGCTCATGT
GACTATGTGATTATGATGTGTCCAGTTTTATTTACGGGGCCGTGTGTTAT
GCATCCTTCCCTGCCTGCGGTGCACCATGATTCGCACTACGGCTGTACTA
CTGTAGTTGTACGATAGTTGTGTTGACTGGACAACAGCCTGACCCGTTGT
CAGAGAAAGCAGACACTTCAAGTGCGCACCATTGGCGAGGGTGTTCCTCA
AGCGTCCATCCGCTCGCCTGAGCCCCGACCAACAACTGTAGCTCCTGTCG
TCGCAATCTGTTCATACCTCCCTGCTATTCCCTGACTGTGTCGCACGATA
TGACCCGACCCCGAAAACTACATAACTTGGCTACCATTGTAGACTAGTTG
TGCTCCGGGTTCTCATGGCACGTGGTTGTTATTTGGTTTCCCAGCTTTGC
GACAACCCATGCCCAGGCAATCCACTCACACTCCAGACCGGCGTGGCAGA
ACGATAGCCCCCGCGAAGGTACACAGAGACCAAATGGAGTGCGCGGTGAG
AGAAGGCAGGTTTGGTTGCATCTGGTCGGATCAGTAATTATGAAACATGA
CGCTCCGAGCTTGAAGTGCTT

protein sequence of EsuBft851_10a-0001

>EsuBft851_10 ID=EsuBft851_10|Name=EsuBft851_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=81bp
MSALEGQQWYIEEIPPVEDNDELGDVVCEPSVTVESEPVDSAQEAVIALD
IGSAATLDTQQRSKVCAYSSTGYDADTAKRY

mRNA from alignment at Scaffold_441:81433..83612+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft851_10a-0001 ID=EsuBft851_10a-0001|Name=EsuBft851_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2180bp|location=Sequence derived from alignment at Scaffold_441:81433..83612+ (Ectocarpus subulatus male Bft15b)
GTTCCTGTGACGGAAAGCACGGACGAGACAGCAGGTGGTCATGTCAGCCC
TGGAGGGCCAACAATGGTACATCGAGGAAATACCCCCCGTAGAAGACAAC
GACGAGCTGGGCGATGTGGTATGTGAACCTTCTGTGACTGTCGAAAGCGA
ACCTGTTGATTCCGCGCAGGAGGCCGTGATCGCGCTTGATATCGGTTCAG
CTGCGACTTTGGATACACAACAACGATCGAAGGTGTGTGCCTATAGCAGT
ACAGGATATGATGCTGATACAGCTAAGAGGTACTGACATATACCCAAGAG
TTCAGCTTGGAGTGTCACTAACAATATTTTGTCGTCAATTTTTAGGAGTT
TTTTCCGCGCGCGAAGCGCGCGTGCGAAAAAAACCCCGGAGCGATAGCGG
AGTTTGTTTTTCGCAAAAAAACTTTGGATGGGTCCTTTTTGGTTCCCCGC
CTGGGTTCTGCGCACGTTGAATAACACCGCCCGTCAGCCCGACCCCTGAA
TTAATTACTGTTCTCAAATTGATGTCCATGTGTGTGTTCGCACCACCTTT
GCACCGATAAACAAGCCGTTTGAGGATCGTTTTCGGTGCGGAAAAGTGCA
CAAGCTGTAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNACGCATACGGAGTGCTGACAACAACGATTCGCATCAACA
ACATCGCATCAACAACGTTTTGGGTGTGTGTACCAAAACAAAAGCAACAC
ATACTCACGGGGGGCGCACGACCCAGCCTACTGCAGGTACTTTCCGCAGC
ACGGGTTATGCTGTTGTGATGGTGCGCGCGGAAAAAACTCCCCCCACTCG
GGGTCTAGTATGTATACATGCAGCCGGACAACGACGTGACAACAGGCCGC
ATCTAGACTACAAGCGTACCTCTGCCATGGCGTAAAACATGTGTTATGTA
AATAGTGTAGTGGCGCTGGTGGTATCTTGATCTTTCAACGTTCCCTTCGA
AGATTCAAGGTACCGTACACAAGCATCAGCAGTACTGGGTCGCAAGCGAA
GGACAACAGAGTGTGGGGGGGGTGTGCAACTCTTCAGGAGTGTATTCTGA
GGCAATGCGGCATGAGGGCTCGTTAACGATCGTCTTGTGTACCTACCCCG
TATAGTTTCTCTCACTGCATGTATTTACGGAGCTGCTGTAAGCACAGCAG
CTACACTTCTGCGGATAAATGAAAGGTTAGAAACTTTGCAGCAAGGGAGG
CGCTCATGTGACTATGTGATTATGATGTGTCCAGTTTTATTTACGGGGCC
GTGTGTTATGCATCCTTCCCTGCCTGCGGTGCACCATGATTCGCACTACG
GCTGTACTACTGTAGTTGTACGATAGTTGTGTTGACTGGACAACAGCCTG
ACCCGTTGTCAGAGAAAGCAGACACTTCAAGTGCGCACCATTGGCGAGGG
TGTTCCTCAAGCGTCCATCCGCTCGCCTGAGCCCCGACCAACAACTGTAG
CTCCTGTCGTCGCAATCTGTTCATACCTCCCTGCTATTCCCTGACTGTGT
CGCACGATATGACCCGACCCCGAAAACTACATAACTTGGCTACCATTGTA
GACTAGTTGTGCTCCGGGTTCTCATGGCACGTGGTTGTTATTTGGTTTCC
CAGCTTTGCGACAACCCATGCCCAGGCAATCCACTCACACTCCAGACCGG
CGTGGCAGAACGATAGCCCCCGCGAAGGTACACAGAGACCAAATGGAGTG
CGCGGTGAGAGAAGGCAGGTTTGGTTGCATCTGGTCGGATCAGTAATTAT
GAAACATGACGCTCCGAGCTTGAAGTGCTT

Coding sequence (CDS) from alignment at Scaffold_441:81433..83612+

>EsuBft851_10a-0001 ID=EsuBft851_10a-0001|Name=EsuBft851_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=246bp|location=Sequence derived from alignment at Scaffold_441:81433..83612+ (Ectocarpus subulatus male Bft15b)
ATGTCAGCCCTGGAGGGCCAACAATGGTACATCGAGGAAATACCCCCCGT
AGAAGACAACGACGAGCTGGGCGATGTGGTATGTGAACCTTCTGTGACTG
TCGAAAGCGAACCTGTTGATTCCGCGCAGGAGGCCGTGATCGCGCTTGAT
ATCGGTTCAGCTGCGACTTTGGATACACAACAACGATCGAAGGTGTGTGC
CTATAGCAGTACAGGATATGATGCTGATACAGCTAAGAGGTACTGA