EsuBft850_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft850_6a-0001
Unique NameEsuBft850_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:487283..488180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog164328.Phyra85923
ProteomeIdEsuBft850_6
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon2
Max annot lvl4776|Peronosporales
Length799
Hectar predicted targeting categoryother localisation
Evalue1.17e-28
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales
Date last modified2016-06-14
Date creation2016-06-14
Descriptiontransposition, RNA-mediated
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft850_6aEsuBft850_6aEctocarpus subulatus male Bft15bgeneScaffold_129 487283..488180 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft850_6a-0001-exonEsuBft850_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 487283..487579 -
EsuBft850_6a-0001-exonagat-exon-89143Ectocarpus subulatus male Bft15bexonScaffold_129 487679..488180 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft850_6a-0001-cdsEsuBft850_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 487283..487579 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft850_6a-0001-exonagat-five_prime_utr-14403Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_129 488102..488180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft850_6a-0001EsuBft850_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 487283..488101 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft850_6a-0001 ID=EsuBft850_6a-0001|Name=EsuBft850_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=799bp|location=Sequence derived from alignment at Scaffold_129:487283..488180- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTGTTCGCTTCCCTCAGCAAGACGTTTCCGGTGAAAAATCTTGGGGAGT
GTACCTGGTACGACGGGTGTGCTATCGCCATGGATGTAGAAAATGGCATT
ACCAAGCTGTCCCAGACAGCATACATTGAGAGTATGCTGAAGCGGTTTGA
TGTGACCACGACCGCTTTCACCCGTGCTGCTACCGATGCCGACCTAGGGC
CGAAGAGAGATGACGAGCCCGCGGTGGATAAGCCTGTGAGGGAGGCGATC
GGATGCCTGATGTTGACGAAGCTGACGAGGCCAGGCATCGCCTTGCCTCT
GAAAAAGCTCCAGAAGATCGCCCACTCACCCACCGGGAGGATATGGAACG
CGCTTGTGCGGATCATGTCCTACCTGAACTTCACGAATGACTTCAGCATC
ACCTACGTACGGGGGTCAGGACTAGACCTAAGCGTGTTTGTCGATGCCAG
CTACACTGACAACGAAGTAGACACGCGTTCGACGACCGGGCTAGCTGTGA
CCGAGGCGTTGTTTGTGCGTGGCGTTCTGTCGTTCATAGCGCCGGAGACG
AGTGGGACGAAGATCAAAGTCCTTGAGGACAACAAGAGGGCTCTCGCCTT
GATCGAGAACCCGTTCAGCTCAGCGAGGAGCAAGCACATCGACGTGCGGT
TCCATTTCATTCGCGAGCTATTCAAGTCGGGCAAGATCACTGCAGAGTAT
GTTCCGACTGGAGAGCAGCACGCAGACATGGTGACCAAGGTCCTTGGCAG
AGAGAAGTTAAAGTACCACCGGAAGGCTCTGATGAATCTATCGATGTAG
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protein sequence of EsuBft850_6a-0001

>EsuBft850_6 ID=EsuBft850_6|Name=EsuBft850_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=239bp
MDVENGITKLSQTAYIESMLKRFDVTTTAFTRAATDADLGPKRDDEPAVD
KPVREAIGCLMLTKLTRPGIALPLKKLQKIAHSPTGRIWNALVRIMSYLN
FTNDFSITYVRGSGLDLSVFVDASYTDNEVDTRSTTGLAVTEALFVRGVL
SFIAPETSGTKIKVLEDNKRALALIENPFSSARSKHIDVRFHFIRELFKS
GKITAEYVPTGEQHADMVTKVLGREKLKYHRKALMNLSM
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mRNA from alignment at Scaffold_129:487283..488180-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft850_6a-0001 ID=EsuBft850_6a-0001|Name=EsuBft850_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=898bp|location=Sequence derived from alignment at Scaffold_129:487283..488180- (Ectocarpus subulatus male Bft15b)
GTTGTTCGCTTCCCTCAGCAAGACGTTTCCGGTGAAAAATCTTGGGGAGT
GTACCTGGTACGACGGGTGTGCTATCGCCATGGATGTAGAAAATGGCATT
ACCAAGCTGTCCCAGACAGCATACATTGAGAGTATGCTGAAGCGGTTTGA
TGTGACCACGACCGCTTTCACCCGTGCTGCTACCGATGCCGACCTAGGGC
CGAAGAGAGATGACGAGCCCGCGGTGGATAAGCCTGTGAGGGAGGCGATC
GGATGCCTGATGTTGACGAAGCTGACGAGGCCAGGCATCGCCTTGCCTCT
GAAAAAGCTCCAGAAGATCGCCCACTCACCCACCGGGAGGATATGGAACG
CGCTTGTGCGGATCATGTCCTACCTGAACTTCACGAATGACTTCAGCATC
ACCTACGTACGGGGGTCAGGACTAGACCTAAGCGTGTTTGTCGATGCCAG
CTACACTGACAACGAAGTAGACACGCGTTCGACGACCGGGCTAGCTGTGA
CCGTGGGTGGTACCGTAGTGTGTGCATCCACCAAGACGCAGCCAGTGACG
GCTCAGTCGACCTCGGAAGCAGAGTATATGGCAGCCGGCGAGGGCGTAAA
GGAGGCGTTGTTTGTGCGTGGCGTTCTGTCGTTCATAGCGCCGGAGACGA
GTGGGACGAAGATCAAAGTCCTTGAGGACAACAAGAGGGCTCTCGCCTTG
ATCGAGAACCCGTTCAGCTCAGCGAGGAGCAAGCACATCGACGTGCGGTT
CCATTTCATTCGCGAGCTATTCAAGTCGGGCAAGATCACTGCAGAGTATG
TTCCGACTGGAGAGCAGCACGCAGACATGGTGACCAAGGTCCTTGGCAGA
GAGAAGTTAAAGTACCACCGGAAGGCTCTGATGAATCTATCGATGTAG
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Coding sequence (CDS) from alignment at Scaffold_129:487283..488180-

>EsuBft850_6a-0001 ID=EsuBft850_6a-0001|Name=EsuBft850_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=720bp|location=Sequence derived from alignment at Scaffold_129:487283..488180- (Ectocarpus subulatus male Bft15b)
ATGGATGTAGAAAATGGCATTACCAAGCTGTCCCAGACAGCATACATTGA
GAGTATGCTGAAGCGGTTTGATGTGACCACGACCGCTTTCACCCGTGCTG
CTACCGATGCCGACCTAGGGCCGAAGAGAGATGACGAGCCCGCGGTGGAT
AAGCCTGTGAGGGAGGCGATCGGATGCCTGATGTTGACGAAGCTGACGAG
GCCAGGCATCGCCTTGCCTCTGAAAAAGCTCCAGAAGATCGCCCACTCAC
CCACCGGGAGGATATGGAACGCGCTTGTGCGGATCATGTCCTACCTGAAC
TTCACGAATGACTTCAGCATCACCTACGTACGGGGGTCAGGACTAGACCT
AAGCGTGTTTGTCGATGCCAGCTACACTGACAACGAAGTAGACACGCGTT
CGACGACCGGGCTAGCTGTGACCGAGGCGTTGTTTGTGCGTGGCGTTCTG
TCGTTCATAGCGCCGGAGACGAGTGGGACGAAGATCAAAGTCCTTGAGGA
CAACAAGAGGGCTCTCGCCTTGATCGAGAACCCGTTCAGCTCAGCGAGGA
GCAAGCACATCGACGTGCGGTTCCATTTCATTCGCGAGCTATTCAAGTCG
GGCAAGATCACTGCAGAGTATGTTCCGACTGGAGAGCAGCACGCAGACAT
GGTGACCAAGGTCCTTGGCAGAGAGAAGTTAAAGTACCACCGGAAGGCTC
TGATGAATCTATCGATGTAG
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