EsuBft850_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft850_5a-0001
Unique NameEsuBft850_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:488182..488842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog4538.ORGLA12G0123700.1
ProteomeIdEsuBft850_5
Protein domainsIPR013103
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon1
Max annot lvl35493|Streptophyta
Length661
Hectar predicted targeting categoryother localisation
Evalue9.97e-27
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M2IR@4447|Liliopsida,3IKX9@38820|Poales
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0006259
GO0005515
EC3.1
GO0097159
GO1901363
GO0004518
GO0016740
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft850_5aEsuBft850_5aEctocarpus subulatus male Bft15bgeneScaffold_129 488182..488842 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft850_5a-0001-exonEsuBft850_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 488182..488842 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft850_5a-0001-exonagat-three_prime_utr-22255Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_129 488182..488338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft850_5a-0001-cdsEsuBft850_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 488339..488812 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft850_5a-0001-exonagat-five_prime_utr-14402Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_129 488813..488842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft850_5a-0001EsuBft850_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 488339..488812 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft850_5a-0001 ID=EsuBft850_5a-0001|Name=EsuBft850_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=661bp|location=Sequence derived from alignment at Scaffold_129:488182..488842- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCGGGTAGAANTGATGTGGAAGCAATACCGATGACGTACAAGGATGTGAT
GTGTTCCAAGTACAAGGTTTTCTGGGAGGCGGCCATGAAGAAAGAGATAG
ATGACCACGACAAGACTGGAACCTTTACCAAGGTCAAGGAGCTGCCCGAC
GGGCGGAAGGCCATCGGTTCAAAGTGGGTGTTCTCTTGGAAGACGAATGA
GAAGGGCCTGATAGTCGACTTCAAGGCCCGTATGGTTGCGCGGGGTTTCT
CTGAAATCCCCGGCATCGACTTCCACCACTCATCCTCAGCGAGCCCGTCT
GCAGCGTCTATCAAGACGGTGATTGCCGTAGCCACTGAAAAGGGCAAGAA
ACTCGCTCACTGGGACGTGAAGCAAGCGTACATCCACGCTAAGCTAAAAA
ACGAAATATACCTCAGGTTCCCGGAAGGCTGTGGTAGCATGTCCGGCAAG
GTGGTCAAGGTTGAGCGTGCCCTGTATGGCCTAAAGCAGAGTGGCCGTGA
GTGAGGGTTTGAAGCTGCCGATGCCCTCATCGAGTATGGATACGAGCAGT
GCAGGGTTGACCCATGTGTCGTCCGGAAGGTGGTGGATGGAGAGGTCGTA
GGTCTCATCGTGATCTACGTTGATGACATCTTTGTGGCGGCAGACGAGGG
AGAGCGAGAGG
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protein sequence of EsuBft850_5a-0001

>EsuBft850_5 ID=EsuBft850_5|Name=EsuBft850_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=157bp
MTYKDVMCSKYKVFWEAAMKKEIDDHDKTGTFTKVKELPDGRKAIGSKWV
FSWKTNEKGLIVDFKARMVARGFSEIPGIDFHHSSSASPSAASIKTVIAV
ATEKGKKLAHWDVKQAYIHAKLKNEIYLRFPEGCGSMSGKVVKVERALYG
LKQSGRE
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mRNA from alignment at Scaffold_129:488182..488842-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft850_5a-0001 ID=EsuBft850_5a-0001|Name=EsuBft850_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=661bp|location=Sequence derived from alignment at Scaffold_129:488182..488842- (Ectocarpus subulatus male Bft15b)
TCGGGTAGAANTGATGTGGAAGCAATACCGATGACGTACAAGGATGTGAT
GTGTTCCAAGTACAAGGTTTTCTGGGAGGCGGCCATGAAGAAAGAGATAG
ATGACCACGACAAGACTGGAACCTTTACCAAGGTCAAGGAGCTGCCCGAC
GGGCGGAAGGCCATCGGTTCAAAGTGGGTGTTCTCTTGGAAGACGAATGA
GAAGGGCCTGATAGTCGACTTCAAGGCCCGTATGGTTGCGCGGGGTTTCT
CTGAAATCCCCGGCATCGACTTCCACCACTCATCCTCAGCGAGCCCGTCT
GCAGCGTCTATCAAGACGGTGATTGCCGTAGCCACTGAAAAGGGCAAGAA
ACTCGCTCACTGGGACGTGAAGCAAGCGTACATCCACGCTAAGCTAAAAA
ACGAAATATACCTCAGGTTCCCGGAAGGCTGTGGTAGCATGTCCGGCAAG
GTGGTCAAGGTTGAGCGTGCCCTGTATGGCCTAAAGCAGAGTGGCCGTGA
GTGAGGGTTTGAAGCTGCCGATGCCCTCATCGAGTATGGATACGAGCAGT
GCAGGGTTGACCCATGTGTCGTCCGGAAGGTGGTGGATGGAGAGGTCGTA
GGTCTCATCGTGATCTACGTTGATGACATCTTTGTGGCGGCAGACGAGGG
AGAGCGAGAGG
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Coding sequence (CDS) from alignment at Scaffold_129:488182..488842-

>EsuBft850_5a-0001 ID=EsuBft850_5a-0001|Name=EsuBft850_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=474bp|location=Sequence derived from alignment at Scaffold_129:488182..488842- (Ectocarpus subulatus male Bft15b)
ATGACGTACAAGGATGTGATGTGTTCCAAGTACAAGGTTTTCTGGGAGGC
GGCCATGAAGAAAGAGATAGATGACCACGACAAGACTGGAACCTTTACCA
AGGTCAAGGAGCTGCCCGACGGGCGGAAGGCCATCGGTTCAAAGTGGGTG
TTCTCTTGGAAGACGAATGAGAAGGGCCTGATAGTCGACTTCAAGGCCCG
TATGGTTGCGCGGGGTTTCTCTGAAATCCCCGGCATCGACTTCCACCACT
CATCCTCAGCGAGCCCGTCTGCAGCGTCTATCAAGACGGTGATTGCCGTA
GCCACTGAAAAGGGCAAGAAACTCGCTCACTGGGACGTGAAGCAAGCGTA
CATCCACGCTAAGCTAAAAAACGAAATATACCTCAGGTTCCCGGAAGGCT
GTGGTAGCATGTCCGGCAAGGTGGTCAAGGTTGAGCGTGCCCTGTATGGC
CTAAAGCAGAGTGGCCGTGAGTGA
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