EsuBft850_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft850_2a-0001
Unique NameEsuBft850_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:515362..515854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft850_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length38
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft850_2aEsuBft850_2aEctocarpus subulatus male Bft15bgeneScaffold_129 515362..515854 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft850_2a-0001-exonEsuBft850_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 515362..515386 +
EsuBft850_2a-0001-exonagat-exon-89138Ectocarpus subulatus male Bft15bexonScaffold_129 515495..515854 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft850_2a-0001-cdsEsuBft850_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 515362..515386 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft850_2a-0001-exonagat-three_prime_utr-22252Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_129 515647..515854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft850_2a-0001EsuBft850_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 515362..515646 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft850_2a-0001 ID=EsuBft850_2a-0001|Name=EsuBft850_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=385bp|location=Sequence derived from alignment at Scaffold_129:515362..515854+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGTGGGAAGGATGGTACAACAGTGGCCATATCTCGGCGAGTGCAGA
GGTACAAGCTCGCATTGCGCGGGCGTCAAGACGCCGAAAACAGGCGAACA
AGATCGACCTCGGACCAGTCAACGCCAATGATATGGGGATGGAGTGTAGA
CGCATCGTAGAACGCGTTTTCGTTTGAAGTTGACGTCTTGTTTGAGAGTA
GATGTGACAGATTTGCGTAGAATAGGGTAAGATGTTATCATGAACGGAGA
TGAAAGGGCTTTTCCAACACGGAGATGTAGCATGGATCAAAGCATTTGTT
GGATTTCAGCTTTTACAAGCGGACATCAACGCAGGCAGTAGTATTTTAGC
AAGCTTACGAACGCATATAGGATACCATCAGGATT
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protein sequence of EsuBft850_2a-0001

>EsuBft850_2 ID=EsuBft850_2|Name=EsuBft850_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=58bp
MRWEGWYNSGHISASAEVQARIARASRRRKQANKIDLGPVNANDMGMECR
RIVERVFV
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mRNA from alignment at Scaffold_129:515362..515854+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft850_2a-0001 ID=EsuBft850_2a-0001|Name=EsuBft850_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=493bp|location=Sequence derived from alignment at Scaffold_129:515362..515854+ (Ectocarpus subulatus male Bft15b)
ATGCGGTGGGAAGGATGGTACAACAGTGAGTCCATGTCTGGGGTACAGCG
ACGAGGACGCGGGTATATGTGAGAGTGACGAACACTNAGTCTTCAAGGAA
CGACTTCTTCAGATCGTTTCGGTGGCTACACAGGTGGCCATATCTCGGCG
AGTGCAGAGGTACAAGCTCGCATTGCGCGGGCGTCAAGACGCCGAAAACA
GGCGAACAAGATCGACCTCGGACCAGTCAACGCCAATGATATGGGGATGG
AGTGTAGACGCATCGTAGAACGCGTTTTCGTTTGAAGTTGACGTCTTGTT
TGAGAGTAGATGTGACAGATTTGCGTAGAATAGGGTAAGATGTTATCATG
AACGGAGATGAAAGGGCTTTTCCAACACGGAGATGTAGCATGGATCAAAG
CATTTGTTGGATTTCAGCTTTTACAAGCGGACATCAACGCAGGCAGTAGT
ATTTTAGCAAGCTTACGAACGCATATAGGATACCATCAGGATT
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Coding sequence (CDS) from alignment at Scaffold_129:515362..515854+

>EsuBft850_2a-0001 ID=EsuBft850_2a-0001|Name=EsuBft850_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=177bp|location=Sequence derived from alignment at Scaffold_129:515362..515854+ (Ectocarpus subulatus male Bft15b)
ATGCGGTGGGAAGGATGGTACAACAGTGGCCATATCTCGGCGAGTGCAGA
GGTACAAGCTCGCATTGCGCGGGCGTCAAGACGCCGAAAACAGGCGAACA
AGATCGACCTCGGACCAGTCAACGCCAATGATATGGGGATGGAGTGTAGA
CGCATCGTAGAACGCGTTTTCGTTTGA
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