EsuBft848_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft848_9a-0001
Unique NameEsuBft848_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:1412652..1413646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft848_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length40
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft848_9aEsuBft848_9aEctocarpus subulatus male Bft15bgeneScaffold_523 1412652..1413646 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft848_9a-0001-exonEsuBft848_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 1412652..1412804 -
EsuBft848_9a-0001-exonagat-exon-52384Ectocarpus subulatus male Bft15bexonScaffold_523 1413395..1413646 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft848_9a-0001-cdsEsuBft848_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 1412652..1412804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft848_9a-0001EsuBft848_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 1412652..1413646 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft848_9a-0001 ID=EsuBft848_9a-0001|Name=EsuBft848_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=405bp|location=Sequence derived from alignment at Scaffold_523:1412652..1413646- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCGCCTTCTTCTTCTGTGTTTAACTCTCTCCAGGTGTGCGACTT
CCACGGACGTGCGGTGGCACACCCGCAGGAATCAGTCGATTCTTCAGCCT
TGGCGGCGTGCTTCATGTCCGGCAGCCTCGAGCAGCACCTCGTCTTCACG
GGATTGGTCGGGGCCGGCCCTGACTTGGATTATCTGACCACCACCGTCTA
CTTCTCGATCAACTCTGGGCGCCCGCTCGCGAGAGCCGCCGGTCCAATGC
AGGTGGGGGAGGACGAGCGCGTCTACGTGGCCGTGAAATTCCCTACCATG
AACGAGCTCTGGCCGGAGATCTACCAAAACGTCGCCGTTGAGGTGGTGCA
GGTGCGCTTGTTTCCTTCTATTCTTTTCTTGTCCGTCAACGGAATGAATG
CGTAG
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protein sequence of EsuBft848_9a-0001

>EsuBft848_9 ID=EsuBft848_9|Name=EsuBft848_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=134bp
MASPSSSVFNSLQVCDFHGRAVAHPQESVDSSALAACFMSGSLEQHLVFT
GLVGAGPDLDYLTTTVYFSINSGRPLARAAGPMQVGEDERVYVAVKFPTM
NELWPEIYQNVAVEVVQVRLFPSILFLSVNGMNA
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mRNA from alignment at Scaffold_523:1412652..1413646-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft848_9a-0001 ID=EsuBft848_9a-0001|Name=EsuBft848_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=995bp|location=Sequence derived from alignment at Scaffold_523:1412652..1413646- (Ectocarpus subulatus male Bft15b)
ATGGCGTCGCCTTCTTCTTCTGTGTTTAACTCTCTCCAGGTGTGCGACTT
CCACGGACGTGCGGTGGCACACCCGCAGGAATCAGTCGATTCTTCAGCCT
TGGCGGCGTGCTTCATGTCCGGCAGCCTCGAGCAGCACCTCGTCTTCACG
GGATTGGTCGGGGCCGGCCCTGACTTGGATTATCTGACCACCACCGTCTA
CTTCTCGATCAACTCTGGGCGCCCGCTCGCGAGAGCCGCCGGTCCAATGC
AGGTATAAGGTGCTACTTTTGTTTCGCCGTTGACCTGAAAGCTTTCCTGT
TAGAACTGTACCGTTCAAGTCCATGTGCTCACATCCCGTTGTGGCTTTCC
TGTAAAAACTGTACCGTTCAAGTCCATGTGCTCAAATTTCCGTAGTAACA
CCTCGACATGATTTTGGCGGTCTCTGCAGTCCGGGGGCTGACTGTTGTCC
GTGAAACGACCACCCGGAGGTAGAGGCGGAAGAGGAAACACGATTAACTG
CCGTTCGTTGTTGTGGCAGTAGTAGTAGCATTTCCTCTCTTCGGAGTGAA
ACGAGTTCTCTCGTTTTCTTCGAATTCTGCTCAATGATGCTGCGCAGCGC
CTCACCGAACTCGCGCACATCAACTGAGCCAGCCGCAGACAATGAAACGA
CCATTAACGACAATAGAACGAACGCCACGAAACAGCAACGGTCGCCACTA
CCACTACAGAAAAAAATTTTAACGTCATATTTTGCTTCATGCTCATATTC
CCCTATCGAAAACAACTGACCCGACTCGCCACTTTTCTTCTCCCTGTCAT
ACTACGTGATGTCATGTCATGTCATGTATGGGCTACCGGCAGGTGGGGGA
GGACGAGCGCGTCTACGTGGCCGTGAAATTCCCTACCATGAACGAGCTCT
GGCCGGAGATCTACCAAAACGTCGCCGTTGAGGTGGTGCAGGTGCGCTTG
TTTCCTTCTATTCTTTTCTTGTCCGTCAACGGAATGAATGCGTAG
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Coding sequence (CDS) from alignment at Scaffold_523:1412652..1413646-

>EsuBft848_9a-0001 ID=EsuBft848_9a-0001|Name=EsuBft848_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=405bp|location=Sequence derived from alignment at Scaffold_523:1412652..1413646- (Ectocarpus subulatus male Bft15b)
ATGGCGTCGCCTTCTTCTTCTGTGTTTAACTCTCTCCAGGTGTGCGACTT
CCACGGACGTGCGGTGGCACACCCGCAGGAATCAGTCGATTCTTCAGCCT
TGGCGGCGTGCTTCATGTCCGGCAGCCTCGAGCAGCACCTCGTCTTCACG
GGATTGGTCGGGGCCGGCCCTGACTTGGATTATCTGACCACCACCGTCTA
CTTCTCGATCAACTCTGGGCGCCCGCTCGCGAGAGCCGCCGGTCCAATGC
AGGTGGGGGAGGACGAGCGCGTCTACGTGGCCGTGAAATTCCCTACCATG
AACGAGCTCTGGCCGGAGATCTACCAAAACGTCGCCGTTGAGGTGGTGCA
GGTGCGCTTGTTTCCTTCTATTCTTTTCTTGTCCGTCAACGGAATGAATG
CGTAG
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