EsuBft848_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft848_2a-0001
Unique NameEsuBft848_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:1322023..1325491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G5Y7
ProteomeIdEsuBft848_2
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsIPR000800
Protein domainsSignalP-TM
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length203
Hectar predicted targeting categorysignal peptide
Evalue4.28e-15
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Ec32 ortholog descriptionNotch domain
Ec32 orthologEc-05_006290.1
Date last modified2016-06-13
Date creation2016-06-13
Cross References
External references for this mRNA
DatabaseAccession
GO0030154
GO0003333
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft848_2aEsuBft848_2aEctocarpus subulatus male Bft15bgeneScaffold_523 1322023..1325491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft848_2a-0001EsuBft848_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 1322059..1323650 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft848_2a-0001-exonagat-exon-52329Ectocarpus subulatus male Bft15bexonScaffold_523 1322023..1322242 +
EsuBft848_2a-0001-exonEsuBft848_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 1322544..1322588 +
EsuBft848_2a-0001-exonagat-exon-52328Ectocarpus subulatus male Bft15bexonScaffold_523 1323076..1323231 +
EsuBft848_2a-0001-exonagat-exon-52330Ectocarpus subulatus male Bft15bexonScaffold_523 1323631..1323906 +
EsuBft848_2a-0001-exonagat-exon-52331Ectocarpus subulatus male Bft15bexonScaffold_523 1324157..1325491 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft848_2a-0001-exonagat-five_prime_utr-14369Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_523 1322023..1322058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft848_2a-0001-cdsEsuBft848_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 1322059..1322242 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft848_2a-0001-exonagat-three_prime_utr-22213Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_523 1323651..1323906 +
EsuBft848_2a-0001-exonagat-three_prime_utr-22214Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_523 1324157..1325491 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft848_2a-0001 ID=EsuBft848_2a-0001|Name=EsuBft848_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2032bp|location=Sequence derived from alignment at Scaffold_523:1322023..1325491+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGGGCGAAGCTTCTCGAAAGCGAGTGGTATCAAGCATGATCATGAGGGT
GTCAAGCCGTTCAGCTGCCGCAACGTTTGCGGCAACGCTCCTCTGCATGG
GAACAGGCGTCCACGGTGCTACAACCACGGCAACCAACACCGGAACCTCT
TCTGTGTGCTTCGACGAGTCTGCCGTCGGTGATGGAAACTGCGACAGAGA
CATCAACTTTGCGGAGTGTGGATACGACGGCGGCGATTGCTGCGAGTGTA
CATGTGTTGCAGAAGGGGAGTACGAGTGCGGAGCTGGTGGCTATGCGTGC
ATCGATCCAGCCGCTGAGTGCGTAAACGATGACGACGTTACCTTCCAGAT
TGCTAGCAGTTGCGTCGCCGACATGATCGGGGATGCGTATTGCGACGAAC
CTAACAACGTAGAGGAGTGCGGCTGCGAGGCTACCCACTAGACCACCGGG
GCGACCGGGTCTGATACTACATGTCGTAGATCGAATGGTCAGCGTGTTGC
GCCTGTGGTGAGCACGGCACTGATCATGGTCGTGCTTAATTAAGCGTTTC
GCGCTGCGTCAACCAGCTACTGATTTCATATGCATCCCTGAACTCAATGC
TGTCCGTTTGGGGTCTCGGTGTCATCCGATGGTTCAGTGTTCGACTCAAT
GCATAGAAAGCTTGCGTGTGACAAACAGCAGAATCCGAGTTGACGAGGCT
ACGACGGCGGTGACTGCTGTCCTTGCACCTGCGAGGTACGAAATATTCGT
CTCGACGACGGGGTAGGGGTAGACTGGATGGAGAAGGAACACCTCAAACC
TAAAAAACGCCGCGGTCGGGAGTTCTAATGTGGTTGGAAGCACTAGTTGG
TTCAACTGGTTTATTGTTCGAAGGAATGAAGGGAACCACAGCCGTTCCTA
GGATGATGATGGTACAAAAGCGTGCTTGCCTGGTGCCAAAAGTCGTGTCC
CGCCCACTCGGTTATTGCTATTTCTTGGTAAGCAAGCATTGTCTTTTTGT
GGCTTATCTACCCATCGTCGTTGATATTCTCTTCCGGCGCGTTCTTACAT
CACGATTACCGTGTGAAACGGGGAAGTATTTTGCATCCTTGTCGCTGCGC
CCTGGCGCTGCGTCCTCCGCCGTTGACTGGATTGATTGACCCTGTCAGGA
CATCCCCACGTACCCGTGCGGGAGCTTCTCGCGCTTCTCGTGCGTCGACC
CCAACGCCCCCTGCGTCAACGACACCGAAGCCCCTACGCCCGTCCCGACT
CCGGTGCCGCCGACAAGCCTGACTGCCGCTCCAGTTGTCGTTGCGTCGTC
GTCTTCCACCCCGGGGTTCCGCAGAATGCACGCCGGGGAGATCGCGGTGA
CGACGGCCGTTGCCGCCGCCTTTGCGGCCGTACTGGTGGCGTAAGCTCCC
TGGGTTTGTGACGCGAGGGTTGGTTTTGGCAAGTGGCTTACAGGGAGTGA
AAAATAACAAACTTTGTGTGGTGCTCGTGGATGAGATTTTCTTTGGGCGC
TCTTCCTTTGGTTGAAGGCACGCGGCTGTGGCTGGTAAAATAATTATGTA
GGAGGCCGTGTTTCCTCCCTGTTCGCCGTCTGAAGATTCTGACGCCAGGA
TGCCCGTTCGAATCGGCTAGAAGAAGTAGATAAGAGTATCAAGCACGCCC
TTTCACGATGAAGAAACGCAATGTTCCTTCATGCCAGAGCGTACACGTGT
GTATGCGTGTCGGAAACGACTTGAGTATCATCCGCACCTTCAAACGCGGG
TAGCTGCTCCCCGTAGGTTTTCACATTGGCGGCGTTCGTGGTGCCGAGTG
CGACGGACCTGCGGTAGTTTTCATGACACGTTTAGGTTTTAGTTGATGGT
GCGTAGCTGTGGTTGACGGTCCTCTCAATAGTATTGAAGCTTCCCGGAAA
AAACTTATATGGGATACAAAGACTAGCACTTATGTTGAGGTCAGAAATGG
CGTTTCTTTGGTTGAAGTTGAGGAGTAAATCAAAGGAGGGGATACAGTAG
GGGGCCCTCTTTAGTGCCGGTATGTGTTCAGA
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protein sequence of EsuBft848_2a-0001

>EsuBft848_2 ID=EsuBft848_2|Name=EsuBft848_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=134bp
MIMRVSSRSAAATFAATLLCMGTGVHGATTTATNTGTSSVCFDESAVGDG
NCDRDINFAECGYDGGDCCECTCVAEGEYECGAGGYACIDPAAECVNDDD
VTFQIASSCVADMIGDAYCDEPNNVEECGCEATH
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mRNA from alignment at Scaffold_523:1322023..1325491+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft848_2a-0001 ID=EsuBft848_2a-0001|Name=EsuBft848_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3469bp|location=Sequence derived from alignment at Scaffold_523:1322023..1325491+ (Ectocarpus subulatus male Bft15b)
GTGGGCGAAGCTTCTCGAAAGCGAGTGGTATCAAGCATGATCATGAGGGT
GTCAAGCCGTTCAGCTGCCGCAACGTTTGCGGCAACGCTCCTCTGCATGG
GAACAGGCGTCCACGGTGCTACAACCACGGCAACCAACACCGGAACCTCT
TCTGTGTGCTTCGACGAGTCTGCCGTCGGTGATGGAAACTGCGACAGAGA
CATCAACTTTGCGGAGTGTGGTGAGCAGCAAAGCGTCATGATCATCCAAG
AACTGCGCGTAACCCTTCGTTTTCGGCGGTTTGCCGTGCGTACCTCTCGT
CCCGATCGATAGCGATTGTTCACGAAGCAGGCTTACAGTCTGGGTTGTAT
CCAACCTGTTTAACTTGCAAGGCTTTCAACCGTTTCGAGCGCGATGCAGA
CTAGTTCACAGTAGTGAACGCTATGCAGACTACATAATAGTAGTGGTGGT
GTTCGAAATTCGACATAATTCCTTTCGAACAGCCCTTTGCGTCTGCTTGC
TCCTCGTATGCCTTGCTGCAGGATACGACGGCGGCGATTGCTGCGAGTGT
ACATGTGTTGCAGAAGGTACGGTTTGCAGCACATTCCAGTCTCCTGTGGT
CCTGTAGCAAGATGATGTGTCTGCGCCGACGTTTGCTGTATGCTTTTTAT
TTTCTAGTGCTTCAAAGCCTATCGATCTTTGGCAAAAATGGGTCGTACAC
CCGAGCTACAGCAGTACTGGTGTACGTTCTTGAAGGGATGGCCTTTGCCC
GCACATCACCGATGCGAATGGTTCGAAATGCAGGGTTTGTTTTTACCGGT
TGGTGCTTTGTGCTGTATCTATTCCCTTTTTTAGCACCTGTACACAATGA
AACATTGTTGTAGTGCTGTTGTCTGCACTGCCCCAGTGTACGGATTACCT
CAGCATAACTTGAAAACGGTGCGTTTCGGCTGCCTGTGCTTTCCCACACA
ATGCCCTACAACGCTTTTTTGGGGGACGACGGCAATGAGACTAGACTAAT
TGTTTCAAACAGCGACAATTAATCAAACAAGTCGGTGCTCACCCATCTCT
CAGGGGAGTACGAGTGCGGAGCTGGTGGCTATGCGTGCATCGATCCAGCC
GCTGAGTGCGTAAACGATGACGACGTTACCTTCCAGATTGCTAGCAGTTG
CGTCGCCGACATGATCGGGGATGCGTATTGCGACGAACCTAACAACGTAG
AGGAGTGCGGTGAGTGCGCGGGACGTTGTAACCGTAGTTTCCGGCGTGGA
TGTCCACCACGAAGTTGCTGTTGTAATAGCGCTACATGTTTTTTTTTGTT
TTTTTTACTCCCATCATTGGACTCTGTCGTCTGCCCCTCTGGCCCCTATC
CTCCACTTCTTCTAGCTAGACCACCCAACCGGGGTCACATAGGAGGGGGG
AGCTGGACCCCCTCCTGCGGTTCATGCCTGAGGTATTTTTATCGCGAGAA
GGGTACAGCAATCCCTTCCCTCGCGACATACGAAGTCGATTATGGTTTAC
TAACAAACGAGCTTTGCAGCGCGTCGCTTTCATCCTACACCAGGATTTAT
TTAGTGAGAAAGAAACTCACTCTGCCGGGACTCGAACCCATGACCTGGCC
CTTAGCAGGCTGCGAGGCTACCCACTAGACCACCGGGGCGACCGGGTCTG
ATACTACATGTCGTAGATCGAATGGTCAGCGTGTTGCGCCTGTGGTGAGC
ACGGCACTGATCATGGTCGTGCTTAATTAAGCGTTTCGCGCTGCGTCAAC
CAGCTACTGATTTCATATGCATCCCTGAACTCAATGCTGTCCGTTTGGGG
TCTCGGTGTCATCCGATGGTTCAGTGTTCGACTCAATGCATAGAAAGCTT
GCGTGTGACAAACAGCAGAATCCGAGTTGACGAGGTACGTGTTGTGACCC
GCGCGAATACATATATTTGCTCACGGTGTAAAACTTTCGCCCAACCTGGC
ATATATACCATGACTGCTTGTGCTGCGGAGAAATCGGGCATTGAACATGA
ATGAGTCCAGGGGTATGGTAACTCATGCAACGCTCGAAACTTTCGCGGCC
CTCAAGGTGATCCGGCATGCTCTGACTGATGTTGCTGTCATTTTCTCGCT
TCCGTGCCTGTGCTCCATTGTTGGCTTCCTTCAGGCTACGACGGCGGTGA
CTGCTGTCCTTGCACCTGCGAGGTACGAAATATTCGTCTCGACGACGGGG
TAGGGGTAGACTGGATGGAGAAGGAACACCTCAAACCTAAAAAACGCCGC
GGTCGGGAGTTCTAATGTGGTTGGAAGCACTAGTTGGTTCAACTGGTTTA
TTGTTCGAAGGAATGAAGGGAACCACAGCCGTTCCTAGGATGATGATGGT
ACAAAAGCGTGCTTGCCTGGTGCCAAAAGTCGTGTCCCGCCCACTCGGTT
ATTGCTATTTCTTGGTAAGCAAGCATTGTCTTTTTGTGGCTTATCTACCC
ATCGTCGTTGATATTCTCTTCCGGCGCGTTCTTACATCACGATTACCGTG
TGAAACGGGGAAGTATTTTGCATCCTTGTCGCTGCGCCCTGGCGCTGCGT
CCTCCGCCGTTGACTGGATTGATTGACCCTGTCAGGACATCCCCACGTAC
CCGTGCGGGAGCTTCTCGCGCTTCTCGTGCGTCGACCCCAACGCCCCCTG
CGTCAACGACACCGAAGCCCCTACGCCCGTCCCGACTCCGGTGCCGCCGA
CAAGCCTGACTGCCGCTCCAGTTGTCGTTGCGTCGTCGTCTTCCACCCCG
GGGTTCCGCAGAATGCACGCCGGGGAGATCGCGGTGACGACGGCCGTTGC
CGCCGCCTTTGCGGCCGTACTGGTGGCGTAAGCTCCCTGGGTTTGTGACG
CGAGGGTTGGTTTTGGCAAGTGGCTTACAGGGAGTGAAAAATAACAAACT
TTGTGTGGTGCTCGTGGATGAGATTTTCTTTGGGCGCTCTTCCTTTGGTT
GAAGGCACGCGGCTGTGGCTGGTAAAATAATTATGTAGGAGGCCGTGTTT
CCTCCCTGTTCGCCGTCTGAAGATTCTGACGCCAGGATGCCCGTTCGAAT
CGGCTAGAAGAAGTAGATAAGAGTATCAAGCACGCCCTTTCACGATGAAG
AAACGCAATGTTCCTTCATGCCAGAGCGTACACGTGTGTATGCGTGTCGG
AAACGACTTGAGTATCATCCGCACCTTCAAACGCGGGTAGCTGCTCCCCG
TAGGTTTTCACATTGGCGGCGTTCGTGGTGCCGAGTGCGACGGACCTGCG
GTAGTTTTCATGACACGTTTAGGTTTTAGTTGATGGTGCGTAGCTGTGGT
TGACGGTCCTCTCAATAGTATTGAAGCTTCCCGGAAAAAACTTATATGGG
ATACAAAGACTAGCACTTATGTTGAGGTCAGAAATGGCGTTTCTTTGGTT
GAAGTTGAGGAGTAAATCAAAGGAGGGGATACAGTAGGGGGCCCTCTTTA
GTGCCGGTATGTGTTCAGA
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Coding sequence (CDS) from alignment at Scaffold_523:1322023..1325491+

>EsuBft848_2a-0001 ID=EsuBft848_2a-0001|Name=EsuBft848_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=405bp|location=Sequence derived from alignment at Scaffold_523:1322023..1325491+ (Ectocarpus subulatus male Bft15b)
ATGATCATGAGGGTGTCAAGCCGTTCAGCTGCCGCAACGTTTGCGGCAAC
GCTCCTCTGCATGGGAACAGGCGTCCACGGTGCTACAACCACGGCAACCA
ACACCGGAACCTCTTCTGTGTGCTTCGACGAGTCTGCCGTCGGTGATGGA
AACTGCGACAGAGACATCAACTTTGCGGAGTGTGGATACGACGGCGGCGA
TTGCTGCGAGTGTACATGTGTTGCAGAAGGGGAGTACGAGTGCGGAGCTG
GTGGCTATGCGTGCATCGATCCAGCCGCTGAGTGCGTAAACGATGACGAC
GTTACCTTCCAGATTGCTAGCAGTTGCGTCGCCGACATGATCGGGGATGC
GTATTGCGACGAACCTAACAACGTAGAGGAGTGCGGCTGCGAGGCTACCC
ACTAG
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