EsuBft848_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft848_10a-0001
Unique NameEsuBft848_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:1422301..1423698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft848_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length33
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft848_10aEsuBft848_10aEctocarpus subulatus male Bft15bgeneScaffold_523 1422301..1423698 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft848_10a-0001-exonagat-exon-52385Ectocarpus subulatus male Bft15bexonScaffold_523 1422301..1422324 -
EsuBft848_10a-0001-exonagat-exon-52386Ectocarpus subulatus male Bft15bexonScaffold_523 1422672..1422770 -
EsuBft848_10a-0001-exonagat-exon-52387Ectocarpus subulatus male Bft15bexonScaffold_523 1423036..1423234 -
EsuBft848_10a-0001-exonEsuBft848_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 1423685..1423698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft848_10a-0001-cdsEsuBft848_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 1422301..1422324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft848_10a-0001EsuBft848_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 1422301..1423698 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft848_10a-0001 ID=EsuBft848_10a-0001|Name=EsuBft848_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=336bp|location=Sequence derived from alignment at Scaffold_523:1422301..1423698- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCTCATCGCGGGGTCGTGCGGTAGCTCAACCGCAGGAGTCAGTCGA
CCGTTCGCCATTGGCGACATTCTTGTTGTCCGGTAGCCGCGAGCAGCACC
TCGTCTTCACGGAATTGGACGGAGCTGGTCCACACTTGGCACATCTCACC
CCCACCGTGCACTTTTCGATTACCGCTGGGCACAGCCTGGAGAGGGCGGG
GGGTCCAATGCAGGTGAGAAAAGACGGGCGCGTCTACGTCGCAGTGAAGT
GTCCCAGTATCAGCGAGCTCTGGCCGGAGATCTACAACAATAGATCCATC
CGAGTCGTGCAGGTGGATGTCTATGTTACGGTTTGA
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protein sequence of EsuBft848_10a-0001

>EsuBft848_10 ID=EsuBft848_10|Name=EsuBft848_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=111bp
MISSRGRAVAQPQESVDRSPLATFLLSGSREQHLVFTELDGAGPHLAHLT
PTVHFSITAGHSLERAGGPMQVRKDGRVYVAVKCPSISELWPEIYNNRSI
RVVQVDVYVTV
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mRNA from alignment at Scaffold_523:1422301..1423698-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft848_10a-0001 ID=EsuBft848_10a-0001|Name=EsuBft848_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1398bp|location=Sequence derived from alignment at Scaffold_523:1422301..1423698- (Ectocarpus subulatus male Bft15b)
ATGATCTCATCGCGGTAAGCTTGGAATCTCTATTGGCCTGTCCGTCGTCT
CGCTCCTGCCGCCGTTCTGATGCAGCAGTCTTCAAATATAGAACTATTTA
TTTGCTTTTGTCAACTACGACACTGAGCCAACATCCAAATTATGACACAC
TTTCTGCTTTTGTTTTATGCCATCATGGATTGTAACATTGCATTTCCAAG
ACTGCTCTGTAAGAGCACCACCATCCGTGATGTTACTGCTGCTGCAGCAG
AAGAACAAGGGTAGATGCCGGGATACTATGTAGTTGAGTGGTGCGACGAT
GTTTGTCTGTCGAACTGCGGTGGTACACGCCGTTGCTCCCAGACACATTG
ATTGACGTGTTCGCCTTGTTGTCATCATATGGTCATTCGAAGGTGCTCCT
GGAGCTCATGATGCTGCCCTTTCACTTCGTGCTGCTACACCACCTCTCAG
GAGTGCGACTTCAGGGGTCGTGCGGTAGCTCAACCGCAGGAGTCAGTCGA
CCGTTCGCCATTGGCGACATTCTTGTTGTCCGGTAGCCGCGAGCAGCACC
TCGTCTTCACGGAATTGGACGGAGCTGGTCCACACTTGGCACATCTCACC
CCCACCGTGCACTTTTCGATTACCGCTGGGCACAGCCTGGAGAGGGCGGG
GGGTCCAATGCAGGTATGCATATGATGTAGGTGGGGGATTGCATTAGTCC
AAGGCTGGCAACCCGTGCGCTTTCCGCGAGGATTGCCGGGCGTACAAGTA
CCATGGGATATTTAGAGCGACAGCGACAGAGGGGTTTTACGAGCGGACAG
GTGGTGAATTCAATACCAACTGTCATAATTGTCTCGAAAGCTTAATGTTG
AGCTCCGATGTTGCATTCACGAACGCCTCACTATTAGACTATGTAGGCGG
GCGTTTCCTTCCTTCCGGCTGTGTTCAGGTGAGAAAAGACGGGCGCGTCT
ACGTCGCAGTGAAGTGTCCCAGTATCAGCGAGCTCTGGCCGGAGATCTAC
AACAATAGATCCATCCGAGTCGTGCAGGTATGGCATGATTTCGTCATATC
AAGTATCAGCGTGACGGGATGAATGTCAATGAGAATCCTACGCTGTGCTT
TACCAGGCTTGCTTTTCCAGCCGAAAAGCCTCAACATACGCACGTAAGCT
TTCGCCGATTGACGATTGACATTGTCAATATAAGGTTGTCGATGCGCCTT
CCGTGTTGCGTTGAGATTATCGTGTATGGACGGGCATGGAGCTGTCCATC
GTCGAGTGCCCCTCCGGAGCTCGTATGCATTCTCCCCCGCCCACCCGTTC
CGGCATCTGTCTGCACCCTTCCCACAAACGAACGTGAACTAAGCCGTCGT
CATTCGTCGTTGGATGATACACAGGTGGATGTCTATGTTACGGTTTGA
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Coding sequence (CDS) from alignment at Scaffold_523:1422301..1423698-

>EsuBft848_10a-0001 ID=EsuBft848_10a-0001|Name=EsuBft848_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=336bp|location=Sequence derived from alignment at Scaffold_523:1422301..1423698- (Ectocarpus subulatus male Bft15b)
ATGATCTCATCGCGGGGTCGTGCGGTAGCTCAACCGCAGGAGTCAGTCGA
CCGTTCGCCATTGGCGACATTCTTGTTGTCCGGTAGCCGCGAGCAGCACC
TCGTCTTCACGGAATTGGACGGAGCTGGTCCACACTTGGCACATCTCACC
CCCACCGTGCACTTTTCGATTACCGCTGGGCACAGCCTGGAGAGGGCGGG
GGGTCCAATGCAGGTGAGAAAAGACGGGCGCGTCTACGTCGCAGTGAAGT
GTCCCAGTATCAGCGAGCTCTGGCCGGAGATCTACAACAATAGATCCATC
CGAGTCGTGCAGGTGGATGTCTATGTTACGGTTTGA
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