EsuBft841_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft841_7a-0001
Unique NameEsuBft841_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_389contigScaffold_389:236656..240462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LGP6
ProteomeIdEsuBft841_7
Protein domainsIPR000511
Ownerapollo_admin@sb-roscoff.fr
Noteprobable cytoScaffold_ome c-type heme lyase os:dictyostelium discoideum gn:cchl pe:3 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1773
Hectar predicted targeting categoryother localisation
Evalue2.73e-166
EggNOG OGsKOG3996@1|root,KOG3996@2759|Eukaryota
Ec32 ortholog descriptionCytochrome c/c1 haem-lyase
Ec32 orthologEc-10_003030.1
Date last modified2016-06-15
Date creation2016-06-15
Preferred nameHCCS
KEGG rclassRC00727,RC02130
KEGG koko:K01764
KEGG ReactionR02480
KEGG Pathwayko00860,map00860
GOsGO:0003674,GO:0003824,GO:0004408,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0006464,GO:0006807,GO:0006996,GO:0007005,GO:0007275,GO:0008150,GO:0008152,GO:0009653,GO:0009887,GO:0009987,GO:0016020,GO:0016043,GO:0016829,GO:0016846,GO:0017003,GO:0017004,GO:0017006,GO:0018063,GO:0019538,GO:0019866,GO:0022607,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0034622,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0055114,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:1901564
EC4.4.1.17
Descriptionholocytochrome-c synthase activity
COG categoryH
BRITEko00000,ko00001,ko01000
Cross References
External references for this mRNA
DatabaseAccession
GO0004408
GO0007275
GO0005794
GO0005740
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft841_7aEsuBft841_7aEctocarpus subulatus male Bft15bgeneScaffold_389 236656..240462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft841_7a-0001EsuBft841_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_389 236729..240034 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft841_7a-0001-exonagat-exon-9374Ectocarpus subulatus male Bft15bexonScaffold_389 236656..237385 +
EsuBft841_7a-0001-exonEsuBft841_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_389 238667..238998 +
EsuBft841_7a-0001-exonagat-exon-9375Ectocarpus subulatus male Bft15bexonScaffold_389 239193..239331 +
EsuBft841_7a-0001-exonagat-exon-9376Ectocarpus subulatus male Bft15bexonScaffold_389 239891..240462 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft841_7a-0001-exonagat-five_prime_utr-14335Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_389 236656..236728 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft841_7a-0001-cdsEsuBft841_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_389 236729..237385 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft841_7a-0001-exonagat-three_prime_utr-22175Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_389 240035..240462 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft841_7a-0001 ID=EsuBft841_7a-0001|Name=EsuBft841_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1773bp|location=Sequence derived from alignment at Scaffold_389:236656..240462+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGCCGCCGCTGCTGTGCACACCGCACACAGCAGGACGGCAATCTACACAG
TCGTCCTAACTGCCGTCAGAAGCATGGCTGGCAGAAGTAGCGGGTGCCCG
GTGCAGCACGCGCCGAAAGAATCCTCGCCGACGCCAGCAGCAACAGCAGC
GGCCGGAAATGAGTCGACTGCTTCGACGGAGTCAGAGCAAGCAAGCGGAC
GGCGCTGGTCATCAAGGGTTGCCGCCTGGCTTCCCTTCCGCCAGGGCGGC
GGTGGTGGCAGTGACAGCAGCGCTTCCAAGGGTAGCGGTGGAGCTGCAGC
ACCAGCACCAGCACCCGTTCAAGGCAGCGCGGCTTGGCGCGGGACGAAGG
AGGAACACGGCGGCGGCGGCGGTGGGGGGTGTCCGGTGAACAGCTCTGGG
GAGGACGGAGGAGACGACGCCGTCCCGCCGTCGTCTTCGTCCGGCTGTCC
CGTCGAGCATGGCTCGGCAGCAACGTCAACAGCAGCCCCGGCAGAAGGGT
TGGGCAGAGTGTGGGGATACCTGACCGGGAGCATCGGTGGGGCGGGAGGT
AGTGGCGAAGTTTCTTCGGCCACGGCACCAGCGCCGGCAGCACCGGAGTT
GTACAATGCGCGGAATAACGAGTACGTCTACGGGCAGGAGGTGGCCGCGG
GGCAGGAGGTTCCCCTGTCCACGTCGCGGCAACGCTCCTCGATTCCGAAG
GCAGAGTTCAACCCGGACCATCAGCCCCAGAAGGAGGCCGAGAAGTGGGT
CTACCCGTCGGAGCAGCAGTACTACAACGCCATCAAGAGGAAGGGGTACA
AGGCCTCGGCGGCAGACATGCCGTCCACCCTGGCTATCCACAACGCCGTG
AACGAAAAGGGGTGGGAGATGGTTCAGGAGTGGGAGAGGGCTCGCGCCGA
GGCCGCCGCAGCTGCGAAGCCCGCCGCCGAGGGAGGGGGGGGCGACGGCG
ACGGTGTCCCAGCAGCCCCCAAGTTGCTCCGCTTCACGGGGAGGCCGCAG
GATACATCGCCGAAGGCTTGGGTCAAGTCGACCCTTCTCGGCTACCGTCC
CCCGTTCGACAGACACGATTGGGTGGTGAAGAGGGCAGACGGCACCGAGG
CACGGTACGTGATCGACTTCTACGCGGGAAAGGCTCCCCCCGGCTCCAGC
ATGCCGGTAGCGATGCACTTGGACGTGCGGCCCGCTCTCGATTCCTACGA
TGCGGTCGTGGACCGGACGCGGATGTTCTACAGCAGGGAGGTCCGCCCCT
ACCTTGCCGGGGTGCTGAACGCCTTCAAGAACGACCCAGGGCCGCCGCCG
TCGGATCACGATGCGCCGCCGCCGCCGCCCTCCGTGGCGCGGTGACACGG
CGTGGGACTGCTGTGCTTGATGCTGCTTCTGCTTCTGCTGCTGCTGCTGC
TGCCGCTGTCAACAGCTCGGGGGTACTCCAGCTCTTGTTTGCCTGAGAGC
GTTGTTGCTGTTGTTGCCGCTGCCATGAAATTGTTTTCCTGGGGGGGGAG
GGTGCCGTGTACATGGAACATATACTATTTTTTGTGGGCGAACATTGCCC
CGGATAGCTGTTACTTGTGTCACTCAATCCCTGGATGTATGGCGGGGCAA
AACAAGCACATTAAGTTGACGGTTGGACCCGTGCGTCTATCTCCTTCTGC
CGCCACGCGTGTGTTGTGTTGAAGCAGCTAGCTATTTACGCCAAGCATGA
GACCACGCCCCGCGAACCGATCTCACGACCACCACCGTGCGGAAGGGGGC
GCAACAATTGAAATTTGGCGATT
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protein sequence of EsuBft841_7a-0001

>EsuBft841_7 ID=EsuBft841_7|Name=EsuBft841_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=423bp
MAGRSSGCPVQHAPKESSPTPAATAAAGNESTASTESEQASGRRWSSRVA
AWLPFRQGGGGGSDSSASKGSGGAAAPAPAPVQGSAAWRGTKEEHGGGGG
GGCPVNSSGEDGGDDAVPPSSSSGCPVEHGSAATSTAAPAEGLGRVWGYL
TGSIGGAGGSGEVSSATAPAPAAPELYNARNNEYVYGQEVAAGQEVPLST
SRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMP
STLAIHNAVNEKGWEMVQEWERARAEAAAAAKPAAEGGGGDGDGVPAAPK
LLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFY
AGKAPPGSSMPVAMHLDVRPALDSYDAVVDRTRMFYSREVRPYLAGVLNA
FKNDPGPPPSDHDAPPPPPSVAR
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mRNA from alignment at Scaffold_389:236656..240462+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft841_7a-0001 ID=EsuBft841_7a-0001|Name=EsuBft841_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3807bp|location=Sequence derived from alignment at Scaffold_389:236656..240462+ (Ectocarpus subulatus male Bft15b)
CGCCGCCGCTGCTGTGCACACCGCACACAGCAGGACGGCAATCTACACAG
TCGTCCTAACTGCCGTCAGAAGCATGGCTGGCAGAAGTAGCGGGTGCCCG
GTGCAGCACGCGCCGAAAGAATCCTCGCCGACGCCAGCAGCAACAGCAGC
GGCCGGAAATGAGTCGACTGCTTCGACGGAGTCAGAGCAAGCAAGCGGAC
GGCGCTGGTCATCAAGGGTTGCCGCCTGGCTTCCCTTCCGCCAGGGCGGC
GGTGGTGGCAGTGACAGCAGCGCTTCCAAGGGTAGCGGTGGAGCTGCAGC
ACCAGCACCAGCACCCGTTCAAGGCAGCGCGGCTTGGCGCGGGACGAAGG
AGGAACACGGCGGCGGCGGCGGTGGGGGGTGTCCGGTGAACAGCTCTGGG
GAGGACGGAGGAGACGACGCCGTCCCGCCGTCGTCTTCGTCCGGCTGTCC
CGTCGAGCATGGCTCGGCAGCAACGTCAACAGCAGCCCCGGCAGAAGGGT
TGGGCAGAGTGTGGGGATACCTGACCGGGAGCATCGGTGGGGCGGGAGGT
AGTGGCGAAGTTTCTTCGGCCACGGCACCAGCGCCGGCAGCACCGGAGTT
GTACAATGCGCGGAATAACGAGTACGTCTACGGGCAGGAGGTGGCCGCGG
GGCAGGAGGTTCCCCTGTCCACGTCGCGGCAACGCTCCTCGATTCCGAAG
GCAGAGTTCAACCCGGACCATCAGCCCCAGGTGCGTTAGTGCGAGGAAAA
CGGGGGAGGTTGTATCTATCCCACCCGGTATACAAAAAGCAGAGTCACCC
CGCAGGGTGGCATAGAGTCAGCTTCGATCGATAATACCGGTCGCCCCGGT
GGTCTAGTGGGTAACCTCGCAGCTTGCTAAGGGCCAGGTCATGGGTTCGA
GTCTCGGCAGAATGAGTTTTTTTCTCACTAAATAACTCCTGGTCTAGGAT
GAAAGCGATGCGTTGCAAAGCTCGTTGTTAGTAAACCATAATCGATTTCG
TAAGTCGCGAGGGAAGGGATTGCGGTACCCTTCTCGCGATAAAAATACAT
ACCTCAGGCAGGAACCGCAGGAGGGGGTCCAGCCCCCCCTTCTATGTGAC
CCCAGTTGGGTCTTCTAGCTAGTAGAAGTGGAGGATAGGGGCCAGAGGGG
CAGAAGACAGAATCCGATGATGGGAGAAAAAAACATACATATTCTCCATG
TCTGCTGTGCGCAAAGTGCGCAACTTCACGAAGACCAAGCGGTCGGTTCC
ACACGAGTTCCTTTCGTTTCCAGCTCTTGGCACGACCACTTCAATGCGCT
GGAGGACGGCCTTTCCAGCATCGCTGGTGCGAGCCTGGGCGGGGTCGATG
CCAATGCCGTTCAGGTCACGGCACAGCGCTCTGTACCGAAGTCGTGGGAT
CCCTTCCCCGATTTCTACCCGCGCAACAGCTTATATATATATTGTGACGC
ACTGATGTTCGAAGGAATATGTACAGCTTGGATCACTCACAGCAGGATTG
GCCGTATCAGGAATGGTGGCGCACAGTGTGGAAAAGAGAAGACTGAGAAC
CTTCCCGGGTGTGCGTCTTGTCTGCGTGATATATGTCTGCGCAAGGGGCT
GAAATCGACTTGCCGGAATGCGCGGGCGTAGCGTTTCAACCTGCTACCTG
CGTGCTTCTGTTTCCGTTGCTCCTCTCCTGTCACTCTACTTGTACGGGTT
TGTTGGAGCGTTGGGCGTTTTTTTCCGTGGGTGAGGGCTTTCATTCAACC
CTCCGAGGAATCCTTATCCTGTTATCTGGTGCGGGAAACTCTCTGTCGTG
CCGAACCCGCTCTTCCTTCTCGCAATTGCTTCGAGGTCCCTGTTCCAAGT
TCCTTGAGCTCCCTCCCCCCGCCCCCCCCGCCCTCGCCCCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTGCGTAAAAAAAAAAACA
CCGCCGTTCAGAAGGAGGCCGAGAAGTGGGTCTACCCGTCGGAGCAGCAG
TACTACAACGCCATCAAGAGGAAGGGGTACAAGGCCTCGGCGGCAGACAT
GCCGTCCACCCTGGCTATCCACAACGCCGTGAACGAAAAGGGGTGGGAGA
TGGTTCAGGAGTGGGAGAGGGCTCGCGCCGAGGCCGCCGCAGCTGCGAAG
CCCGCCGCCGAGGGAGGGGGGGGCGACGGCGACGGTGTCCCAGCAGCCCC
CAAGTTGCTCCGCTTCACGGGGAGGCCGCAGGATACATCGCCGAAGGCTT
GGGTCAAGTCGACCCTTCTCGGCTACCGTCCCCCGTTCGACAGGTAGACC
ACATGCTGTGTGTTGGCTTCATGCTGTCAACGGTGTGGGTGTCAGTTCAC
CTCGTTCTAGGTAAAGTTTTTTTTATGGGGGGGGGGGGGGGCATTGGGAA
TGAGCAGCCATGACGCGCTTGTTTGTTTCGCCCCATCCCACCCCACCCAC
ATGTCTCATTTCTCGTGCGCTTCCCCCTCCCCGGCAGACACGATTGGGTG
GTGAAGAGGGCAGACGGCACCGAGGCACGGTACGTGATCGACTTCTACGC
GGGAAAGGCTCCCCCCGGCTCCAGCATGCCGGTAGCGATGCACTTGGACG
TGCGGCCCGCTCTCGATTCCTACGATGTAAGTCGGCCAGTTTCGTGCCAG
GTACTTTTTCCATGTCGTTGGTTCATGTTGTCTACTTTGTCATCAGTTGT
GTCTGCCTTCGAAGGCTTGCCGTCACGGCGCGTGCATGTCGGTCACCGCA
AACGTTGTCATCGGACGGCCTTGTTTGGCGGCGACGATGTGCCCAGATAT
GGAGGCCAATCGTTCCCTAGGATATCTTCATCCACGCAGGGAGCAATAAC
TCCCTCATCAAGGCGAGGTTCGAGACAACCACAAAGCGAAAGAGTCAACT
CTTGCATCGATCGCACGGTCATTGTGATGCATGCATATGTCTTTCTTGCG
TTGCACGCGAGAACTGCACGAGCTCTCATGTTTATCCCCCCGACGGTGTT
TCCGCTCGCAAGACAAGACGACTCTCCCCCGTTATACTTTTTTCTCTGTT
TGGCAAGAGACCGTCACTGTTGCTTCCCTCCCCTTCTTTTGTTTTATTGT
GTAGCAAGCATAGACCAATGACCGCTGCTTCCCTTCCCAAAATGTGGATG
GTGCCGTTTGTCATCCGAACTGGGACACACTTAAGGCGGTCGTGGACCGG
ACGCGGATGTTCTACAGCAGGGAGGTCCGCCCCTACCTTGCCGGGGTGCT
GAACGCCTTCAAGAACGACCCAGGGCCGCCGCCGTCGGATCACGATGCGC
CGCCGCCGCCGCCCTCCGTGGCGCGGTGACACGGCGTGGGACTGCTGTGC
TTGATGCTGCTTCTGCTTCTGCTGCTGCTGCTGCTGCCGCTGTCAACAGC
TCGGGGGTACTCCAGCTCTTGTTTGCCTGAGAGCGTTGTTGCTGTTGTTG
CCGCTGCCATGAAATTGTTTTCCTGGGGGGGGAGGGTGCCGTGTACATGG
AACATATACTATTTTTTGTGGGCGAACATTGCCCCGGATAGCTGTTACTT
GTGTCACTCAATCCCTGGATGTATGGCGGGGCAAAACAAGCACATTAAGT
TGACGGTTGGACCCGTGCGTCTATCTCCTTCTGCCGCCACGCGTGTGTTG
TGTTGAAGCAGCTAGCTATTTACGCCAAGCATGAGACCACGCCCCGCGAA
CCGATCTCACGACCACCACCGTGCGGAAGGGGGCGCAACAATTGAAATTT
GGCGATT
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Coding sequence (CDS) from alignment at Scaffold_389:236656..240462+

>EsuBft841_7a-0001 ID=EsuBft841_7a-0001|Name=EsuBft841_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1272bp|location=Sequence derived from alignment at Scaffold_389:236656..240462+ (Ectocarpus subulatus male Bft15b)
ATGGCTGGCAGAAGTAGCGGGTGCCCGGTGCAGCACGCGCCGAAAGAATC
CTCGCCGACGCCAGCAGCAACAGCAGCGGCCGGAAATGAGTCGACTGCTT
CGACGGAGTCAGAGCAAGCAAGCGGACGGCGCTGGTCATCAAGGGTTGCC
GCCTGGCTTCCCTTCCGCCAGGGCGGCGGTGGTGGCAGTGACAGCAGCGC
TTCCAAGGGTAGCGGTGGAGCTGCAGCACCAGCACCAGCACCCGTTCAAG
GCAGCGCGGCTTGGCGCGGGACGAAGGAGGAACACGGCGGCGGCGGCGGT
GGGGGGTGTCCGGTGAACAGCTCTGGGGAGGACGGAGGAGACGACGCCGT
CCCGCCGTCGTCTTCGTCCGGCTGTCCCGTCGAGCATGGCTCGGCAGCAA
CGTCAACAGCAGCCCCGGCAGAAGGGTTGGGCAGAGTGTGGGGATACCTG
ACCGGGAGCATCGGTGGGGCGGGAGGTAGTGGCGAAGTTTCTTCGGCCAC
GGCACCAGCGCCGGCAGCACCGGAGTTGTACAATGCGCGGAATAACGAGT
ACGTCTACGGGCAGGAGGTGGCCGCGGGGCAGGAGGTTCCCCTGTCCACG
TCGCGGCAACGCTCCTCGATTCCGAAGGCAGAGTTCAACCCGGACCATCA
GCCCCAGAAGGAGGCCGAGAAGTGGGTCTACCCGTCGGAGCAGCAGTACT
ACAACGCCATCAAGAGGAAGGGGTACAAGGCCTCGGCGGCAGACATGCCG
TCCACCCTGGCTATCCACAACGCCGTGAACGAAAAGGGGTGGGAGATGGT
TCAGGAGTGGGAGAGGGCTCGCGCCGAGGCCGCCGCAGCTGCGAAGCCCG
CCGCCGAGGGAGGGGGGGGCGACGGCGACGGTGTCCCAGCAGCCCCCAAG
TTGCTCCGCTTCACGGGGAGGCCGCAGGATACATCGCCGAAGGCTTGGGT
CAAGTCGACCCTTCTCGGCTACCGTCCCCCGTTCGACAGACACGATTGGG
TGGTGAAGAGGGCAGACGGCACCGAGGCACGGTACGTGATCGACTTCTAC
GCGGGAAAGGCTCCCCCCGGCTCCAGCATGCCGGTAGCGATGCACTTGGA
CGTGCGGCCCGCTCTCGATTCCTACGATGCGGTCGTGGACCGGACGCGGA
TGTTCTACAGCAGGGAGGTCCGCCCCTACCTTGCCGGGGTGCTGAACGCC
TTCAAGAACGACCCAGGGCCGCCGCCGTCGGATCACGATGCGCCGCCGCC
GCCGCCCTCCGTGGCGCGGTGA
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