EsuBft839_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft839_9a-0001
Unique NameEsuBft839_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:309497..310626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft839_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length113
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft839_9aEsuBft839_9aEctocarpus subulatus male Bft15bgeneScaffold_340 309497..310626 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_9a-0001-exonEsuBft839_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 309497..310626 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_9a-0001-exonagat-five_prime_utr-14309Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_340 309497..309530 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_9a-0001-cdsEsuBft839_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 309531..309686 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_9a-0001-exonagat-three_prime_utr-22129Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_340 309687..310626 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_9a-0001EsuBft839_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 309531..309686 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft839_9a-0001 ID=EsuBft839_9a-0001|Name=EsuBft839_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1130bp|location=Sequence derived from alignment at Scaffold_340:309497..310626+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCGCGGGCCTCCAGGCCGTCGGTGTAGGCAGCAATGCCCATCTCATCTT
TGTGCGCGGAGGCAGACGTCATCAGAAAGGTGGACGGGCACTATGTACAC
GGCCCTAGGTTTGCCAGAGGGAGCTGTACTGTCTCAGTAACCTGGTTTTG
CCATCAAAGGAGGAGGGGACAGGTGGTGACGACGAGCTGATTGGGCTGGT
TGACCCTTCGGCGCGAGAATCTTCAGACCGAGATGAACTCTTAAGTGCGA
CGAGGGGGAGAGCGAGGAACCGACTGGGAAGGACAGCAACGAGAGCGTGT
ACGAGCGGAGCGGGTCGAGTTTGGTCGTGCTAGGACTGGCCACAGCGGCA
CCGGAGCAGCGGCACAACAGCAGCGACACCGGAGCAGCGGAACCGGAGCA
GGCGGACGGCATCGAACCGTGGCGTACGGACAAACATCTCTTGTATTGTC
GATTATTTTTCCGTTTTTTTTCCTGAATACAGGTGTTGGGTGTGTGTGAT
GACGTCACTGGTTTTGTAGAGAGACGCGGCAGAGATGGCGCGGATAACCC
GGGTGCCTTAATTGTGTACCTGCATCGTGGAAGACCCCTTCAATGTGGAA
CGATTCCTAGTCAGCGTCGATGTTTACACTGCTGTGCCTAACACAGCTGA
TCTGGATTGATTCGGGTGATTGTCAATTGCAATGATGGCTTTGGTTGGCC
ATTCTTCTTCATTGTATGTCCACGGGCTCATTCTGACAGCACTTCAGACA
GCAGCTGCATGCCCCGAGCTTGTGTACCATGCACCATGGTGTTNATGCCC
CGAGCTTGTGTACCATGCACTATGGTGTTATTATTGTGCAGACAGCACTT
CAGACAGCAGTACGCTGTAGTAGTCGACAAACATTCATTTTGGTTAAATG
CGGGGCAGGGGGGGTGATGCTGCTGCTGTAGCCGATTTGTAGTGTGTGGG
CGTGTATTCTGAATCAGTTGGGAGCACGCAAACGTGCGGCAGGGATTGCA
GGTGTACCTCCTCGGGCTTGCGTACCCTTTCCTTGCAAAAAGTGTGTGTG
TTCTTCAGATCTTCTGATGGCTCTAGTATTTTTGTGACCACGGACCGAGT
CTTTTGCTAGATTTTGGGATTAGCAACTGA
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protein sequence of EsuBft839_9a-0001

>EsuBft839_9 ID=EsuBft839_9|Name=EsuBft839_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=51bp
MPISSLCAEADVIRKVDGHYVHGPRFARGSCTVSVTWFCHQRRRGQVVTT
S
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mRNA from alignment at Scaffold_340:309497..310626+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft839_9a-0001 ID=EsuBft839_9a-0001|Name=EsuBft839_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1130bp|location=Sequence derived from alignment at Scaffold_340:309497..310626+ (Ectocarpus subulatus male Bft15b)
TGCGCGGGCCTCCAGGCCGTCGGTGTAGGCAGCAATGCCCATCTCATCTT
TGTGCGCGGAGGCAGACGTCATCAGAAAGGTGGACGGGCACTATGTACAC
GGCCCTAGGTTTGCCAGAGGGAGCTGTACTGTCTCAGTAACCTGGTTTTG
CCATCAAAGGAGGAGGGGACAGGTGGTGACGACGAGCTGATTGGGCTGGT
TGACCCTTCGGCGCGAGAATCTTCAGACCGAGATGAACTCTTAAGTGCGA
CGAGGGGGAGAGCGAGGAACCGACTGGGAAGGACAGCAACGAGAGCGTGT
ACGAGCGGAGCGGGTCGAGTTTGGTCGTGCTAGGACTGGCCACAGCGGCA
CCGGAGCAGCGGCACAACAGCAGCGACACCGGAGCAGCGGAACCGGAGCA
GGCGGACGGCATCGAACCGTGGCGTACGGACAAACATCTCTTGTATTGTC
GATTATTTTTCCGTTTTTTTTCCTGAATACAGGTGTTGGGTGTGTGTGAT
GACGTCACTGGTTTTGTAGAGAGACGCGGCAGAGATGGCGCGGATAACCC
GGGTGCCTTAATTGTGTACCTGCATCGTGGAAGACCCCTTCAATGTGGAA
CGATTCCTAGTCAGCGTCGATGTTTACACTGCTGTGCCTAACACAGCTGA
TCTGGATTGATTCGGGTGATTGTCAATTGCAATGATGGCTTTGGTTGGCC
ATTCTTCTTCATTGTATGTCCACGGGCTCATTCTGACAGCACTTCAGACA
GCAGCTGCATGCCCCGAGCTTGTGTACCATGCACCATGGTGTTNATGCCC
CGAGCTTGTGTACCATGCACTATGGTGTTATTATTGTGCAGACAGCACTT
CAGACAGCAGTACGCTGTAGTAGTCGACAAACATTCATTTTGGTTAAATG
CGGGGCAGGGGGGGTGATGCTGCTGCTGTAGCCGATTTGTAGTGTGTGGG
CGTGTATTCTGAATCAGTTGGGAGCACGCAAACGTGCGGCAGGGATTGCA
GGTGTACCTCCTCGGGCTTGCGTACCCTTTCCTTGCAAAAAGTGTGTGTG
TTCTTCAGATCTTCTGATGGCTCTAGTATTTTTGTGACCACGGACCGAGT
CTTTTGCTAGATTTTGGGATTAGCAACTGA
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Coding sequence (CDS) from alignment at Scaffold_340:309497..310626+

>EsuBft839_9a-0001 ID=EsuBft839_9a-0001|Name=EsuBft839_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=156bp|location=Sequence derived from alignment at Scaffold_340:309497..310626+ (Ectocarpus subulatus male Bft15b)
ATGCCCATCTCATCTTTGTGCGCGGAGGCAGACGTCATCAGAAAGGTGGA
CGGGCACTATGTACACGGCCCTAGGTTTGCCAGAGGGAGCTGTACTGTCT
CAGTAACCTGGTTTTGCCATCAAAGGAGGAGGGGACAGGTGGTGACGACG
AGCTGA
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