EsuBft839_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft839_8a-0001
Unique NameEsuBft839_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:303852..308925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LN75
ProteomeIdEsuBft839_8
Protein domainsPTHR11717
Protein domainsIPR017867
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsG3DSA
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsIPR023485
Ownerapollo_admin@sb-roscoff.fr
Notelow molecular weight protein-tyrosine-phosphatase slr0328 os:synechocystis (strain pcc 6803 kazusa) gn:slr0328 pe:3 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length817
Hectar predicted targeting categorysignal peptide
Evalue2.12e-168
EggNOG OGsCOG0394@1|root,KOG3217@2759|Eukaryota
Ec32 ortholog descriptionProtein tyrosine phosphatase
Ec32 orthologEc-05_003800.1
Date last modified2016-06-13
Date creation2016-06-13
Preferred namestp1
KEGG rclassRC00017
KEGG koko:K01104,ko:K14394
KEGG ReactionR00548,R02135
KEGG Pathwayko00730,ko00740,ko01100,map00730,map00740,map01100
GOsGO:0003674,GO:0003824,GO:0003993,GO:0004721,GO:0004725,GO:0004726,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0023052,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0071704,GO:0140096,GO:1901564
EC3.1.3.2,3.1.3.48
Descriptionnon-membrane spanning protein tyrosine phosphatase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01009
Cross References
External references for this mRNA
DatabaseAccession
GO0005975
GO0004725
GO0006470
EC3.1.3.48
GO0044424
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft839_8aEsuBft839_8aEctocarpus subulatus male Bft15bgeneScaffold_340 303852..308925 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_8a-0001EsuBft839_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 303872..308905 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_8a-0001-exonagat-exon-46620Ectocarpus subulatus male Bft15bexonScaffold_340 303852..303949 -
EsuBft839_8a-0001-exonEsuBft839_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 304815..304982 -
EsuBft839_8a-0001-exonagat-exon-46621Ectocarpus subulatus male Bft15bexonScaffold_340 306274..306424 -
EsuBft839_8a-0001-exonagat-exon-46618Ectocarpus subulatus male Bft15bexonScaffold_340 306870..307149 -
EsuBft839_8a-0001-exonagat-exon-46619Ectocarpus subulatus male Bft15bexonScaffold_340 308806..308925 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_8a-0001-exonagat-three_prime_utr-22128Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_340 303852..303871 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_8a-0001-cdsEsuBft839_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 303872..303949 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_8a-0001-exonagat-five_prime_utr-14308Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_340 308906..308925 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft839_8a-0001 ID=EsuBft839_8a-0001|Name=EsuBft839_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=817bp|location=Sequence derived from alignment at Scaffold_340:303852..308925- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGAGGCGAGCGACGATCTCGATGGTCCAAGCAGTAGAACCAGGAAGGGCT
CTCACAAGCTTCATAGTTTTGTCCGCCCTAGCGTCGCGTTTCTGCAGCGC
ATTTGTTGCTCCCCGGCTTGGAGGACCGGCACCCCTCCGTGCTTCCCTTC
GTTGGAGCATCCCCAGAGTTGCTCGGGCCGCCGCAACCGCGAGCATCCCG
CCGGTCAACGCTGGGAAACGGCCAACGTCGCTGGTGATGGCGGGAGAAGG
CGGCAAGACGCGGGTCCTTTTCGTTTGCCTCGGCAACATTTGCAGAAGCC
CTACGGCCGAAGCTGTTTTCAAACAGGTGACCTCCAAGGCAGGGGACGCA
GACAAGTTCGAAATCGACTCGTGCGGGACCGGAGGAGGAAATCCAAGTTG
GTACAAAGAGGGCGGGGAGAGCTATCACACAGGGGATTCCCCGGATGCTC
GAATGACGGCTGCCGCGGCAAAAAGAGGGGTGATGCTTAGCGGGGCCTCG
CGGCCTCTGACTCCGGGTGATTTCGATAAGTTCGACCTCGTCGTGGGTAT
GGATGAGGCGAACACCAAGGCGATGTCAACTGCCGCCGAGCACTGGGGCA
AGAGCCAGGAGGCGATCTCGAAGCTGCGGACGATCACTTCCTACTGCAGG
TCGAGCGGCGACGTGAAGAGCGTCCCGGACCCATACTACGGCGGACCTCA
GGTCGGCAAGAGTGCTGGTGGTTTCGAGACCGTGCTGGATCTTTTGGACG
ACGCATGCCAGGGTCTGCTCGAGAAATGCCGCGCAGGGGAAGCGTGACGC
CGACACATGATATACAT
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protein sequence of EsuBft839_8a-0001

>EsuBft839_8 ID=EsuBft839_8|Name=EsuBft839_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=258bp
MVQAVEPGRALTSFIVLSALASRFCSAFVAPRLGGPAPLRASLRWSIPRV
ARAAATASIPPVNAGKRPTSLVMAGEGGKTRVLFVCLGNICRSPTAEAVF
KQVTSKAGDADKFEIDSCGTGGGNPSWYKEGGESYHTGDSPDARMTAAAA
KRGVMLSGASRPLTPGDFDKFDLVVGMDEANTKAMSTAAEHWGKSQEAIS
KLRTITSYCRSSGDVKSVPDPYYGGPQVGKSAGGFETVLDLLDDACQGLL
EKCRAGEA
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mRNA from alignment at Scaffold_340:303852..308925-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft839_8a-0001 ID=EsuBft839_8a-0001|Name=EsuBft839_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5074bp|location=Sequence derived from alignment at Scaffold_340:303852..308925- (Ectocarpus subulatus male Bft15b)
AGAGGCGAGCGACGATCTCGATGGTCCAAGCAGTAGAACCAGGAAGGGCT
CTCACAAGCTTCATAGTTTTGTCCGCCCTAGCGTCGCGTTTCTGCAGCGC
ATTTGTTGCTCCCCGGCTTGGTGAGAGAGGTTATCATGCACCCTCCTTTC
GTCAACTCATGATGTGCAACGCGGTTTTGCGTGTTTTCGTTGTGTTGGAA
TACGTTGGCGGGTACATCCTCGCGTCTGCTGCAGGGTCGCATTGTTGGGC
GTTCATTCCAGAAGGCATACAGCTACGGCGTGAAAAACACCTCGATCGCA
CTTACTGCACAAATGTTATGTTTTTTGTCGTATATTTTGCCCGGCGCGCA
CGCGGCGGTGCGCACCCTGTTGTAGATAACGGCAGCACTGCTGTGACAGC
TGTAGGCTGTCGCAGCTGTCACTGCTGTCCCCAAGTGAAATGTACTGTAG
TAAAAAGGACCTGTTCGCGTTTTGAAGTCCCATCCGTTGTTTGCCGTACG
GTATAAGGGTTTACTCGGTAATTTTTCCACCGTGAAATCACCGCCGTGGT
GGGCGGTCCCGGTAGTACGCCGTTTTTACGCCGTTTTTTGTTTTTTTACG
CCTCCTCCGCCAAAGGCGTTACCCCCGATAAACGAGTTACCGCTTACATG
TACCGCGAACATTTTCTGCCGCATGTCGTTACCGGCGAAAAATTGCCGCC
AACATCCCGTGTTTCCGCCTCCACCAAAGTCGTAATCGCCAACAAATGCA
TTACCGCCTACCGCCCAAATATATACCGCCATACAGGTACGTTACCGCCG
AACGATTGGCTGAGTGAGTCGAGGTCTAGTCTCGATTGCTGTACAACCAC
AGCCTGAATCAGGAGGTCGGGTTCACTTGTGGACGTACTTTTTTTTTTTT
TCTTAATATGACACAACGAGTCCATCTCTATCATAGAAAAGAGTCATAGA
CAGATTAACAATGGAATCATAGCGTCAGAGAAAACTACCTGTATGTCTAC
GATTTCCCAGGCAGCATATAGGGACATCTTTTTGTTTTCCGGCCATATTT
ATTCCATGAAGCATCTGTTTCCTTCGGTTCTGGATTTTGGTTCTGGTTCG
TTTTCGGGAGAACCATTGAATATGTTGAGTGGACAGTGGAGACTCTACAA
TGCGAAAGTCCACTGCGTCGAGTCGACTCTGCAATGCGAAAGTCGCTGGT
GAAAACGACAAAACAACCCTATGGACGTGCGTGGTCAATCTCCGGAAAAA
CAGTGGTTTGCGGTCTGTTCGGGCGCGGGAACCTAGGACCGCAATTGTCG
TGGTGTCGCTTGAAGTTGTGCCCATATGGAAACGGCAATCAGTACCGCCG
TGAAATTATCGCAGTGGTGGGCGGTCCCGGTACTCCGCCGTTTTACCGCC
ATTTTTTGGCTTTATCGCCTCCGCCAAATTCGCTACCGCCAATACACGCG
TTACCGCCGACCGCCAAAACGATCACCGCCGTGTGGCTTTACCGCTGAAG
AATTTCCGCCAAAATTCTGTTTTGCGCCTCCGCCGAAGTGTTACGGCCGA
AAATCGCACTACCGCCGTATGGCAATACCGCCGAAAACCTTTCCGCCGAA
AAAAACTTTATCGAGTAAACCCTTGATATTTACCAACTCAATTCGAACAG
CAGGTCTCTCGTTTACAACGGCGGGGTACCAACCAACCACCGCCCCGCTT
GCACTAATAAATAATGGTACAAGTTGTACCTCACCAACCACTGCATCTCC
ACGTGCCCCCCCCTTGCTTGCCAAAGGAGGACCGGCACCCCTCCGTGCTT
CCCTTCGTTGGAGCATCCCCAGAGTTGCTCGGGCCGCCGCAACCGCGAGC
ATCCCGCCGGTCAACGCTGGGAAACGGCCAACGTCGCTGGTGATGGCGGG
AGAAGGCGGCAAGACGCGGGTCCTTTTCGTTTGCCTCGGCAACATTTGCA
GAAGCCCTACGGCCGAAGCTGTTTTCAAACAGGTGACCTCCAAGGCAGGG
GACGCAGACAAGTTCGAAATCGACTCGTGCGGGACCGGAGGAGGAAATCC
AAGTTGGTGAGCGGGTGAAGGTGATCGGAGGGGTACCAGTAAACCTTGAG
GGTACTGCTGTGTGTGCTATCCTGTACTCGTCCTGTAGCGACATTAAACA
TCAAGTCTGGCATTCAAACCCGTAGGGCAGCAGCGGGCAACCCAGGCTGG
TGAAGGGGGAACGGGTAGAAGCGGCAGAGCGTGTCGCGCAACAGCAATGG
TGCTGTAACAGCCAGCGACTGGTGCTTCGCTGTATTCTGTAAGACCGTGA
GGATGGTGTTCAACATGGTGTGTGCCCGCTATCATCCATCCGCTCCCGCC
ATGCATGGCCGGAGGCTCTCGTATCCGAACAATGCCATGATGGCGAGAAG
ACGTCTTACGTGTCGCAAACCGCGAACACAGCAGCAGCAGCAGCAGCAGC
AGCAGCCGTTGCGTTGACTTTCCGTCCATCAAACCTTCTCGCACTTGAAA
GGTACAAAGAGGGCGGGGAGAGCTATCACACAGGGGATTCCCCGGATGCT
CGAATGACGGCTGCCGCGGCAAAAAGAGGGGTGATGCTTAGCGGGGCCTC
GCGGCCTCTGACTCCGGGTGATTTCGATAAGTTCGACCTCGTCGTGGGTA
TGGTGAGAGCCAGGGAAGGGGGAGGGGGATTAGAATTGTTGTACGTATTG
TCGCAGAATAGGCAGTATGATTCCTAGGATATAGCTCTGGTGAAAGTAAG
CTATGTGGAAATAGGTGTGTTCGTGTTCCGAAGATCTCAAAACGACGGCA
ATATGAGGCATGTTGTGCATGGCTGAGACTCAGGATCCCGTTCGCTCCAT
TTTTTGTTGTGGACAATTTTGACGAGAAGCTTAACCTGTCCGGGCTGTAT
CAAAAGATGAATGGGGGAGTAATCTTGGAGCGTTCATGCCACACGAGCCA
GATGTTTAAGGGAGAGCATCGCTTGATATATTGCAAATGGTGTATGCGTC
CATGTTTATGTCGCGAAGTAGGCCTGCTGCGGCAGAGTGCGAGCCAACGT
CGAGGATGGTTGAGTGGCACTTCAACATTCCGTACTCATCTTGACCCTCC
TTATCCTTGTTTTTTTTTTATAGATCCTGTTCCTTCTCTCTCGGCAGAAG
CAACAGATATCTTCTTCTTGAACCCCTCTAGACCTTCCTCTTCCAGCGTA
TCACCTTCGTCAATTTCGAACTCCTTCCATACGTCATCTACAACCTTGAC
CCATTCTGTGGGTTGTCTACCCCTCTTGTTTGCCCACTTCTCCTCCCAAG
TTATTCTCGGCAACCTCTCCTCTCCTATTTCGCCCATGCGGTACTGCTAT
TTTAGCTTCCCTGCACATCCTCCCGGTCGTTGGGTCTGGATCCCCAGTTC
TACCCTGACGGCTGCATTACTTGTGGGCTTGGAGCATCTTAGGATGATTT
TCGCTGCTCTCATCTGCGTCGCTTGGAGCTCTTTGACAACCATCATATTT
CCTTCGCATACTTCTTCGGTTCACTCTAGCGGCGGTACGTGTGCGATCTT
CAAAACTGTTAATTGATGCGTTTATCGAGGTGCCGGTTTGCGAGTATTGG
GTGCAGCTTCCCTGCTCGTGCTTTGCGCCGTTCCGCTTGGACATATGCGC
ATTCCACAAGCACTCTTGTGCGATCTATTCTCAGAGATATGCGCACCGTT
CCATTACCGGAAGCTCCTCGACCCCCCACTTCCATCTGTACTCTACTGGT
TTTTCCCCGTCCTCGTTGCATATCATATCGGCACTCTTAAGGCTGGCAGA
CGATCTCCACATGTCAGCAGTAGGACGAGGGGGAGGGAGGCTTTGTTCCC
CGAGGTGCTCTGAAACTCTCCCTCGTAGAAAACCAATCCGCCCTCCGTAT
CATCCGCAAACTCTCCCCCCGTTCCCAATCCTCGCGAAAATAGGATGAGG
CGAACACCAAGGCGATGTCAACTGCCGCCGAGCACTGGGGCAAGAGCCAG
GAGGCGATCTCGAAGCTGCGGACGATCACTTCCTACTGCAGGTCGAGCGG
CGACGTGAAGAGCGTCCCGGACCCATACTACGGCGGACCTCAGGTCGGCA
AGAGTGCTGGTGTATGCGGGGGTGAATAATAAAATCACTTGTGCGAGGAA
ATGTTTCGTTGGTGCTGGTGCCCGTGCTGCTGCTGTTGCTCTCGCTACCA
AACTCTGCTGTTGAACCCGTTGCGAGGGAAAGTCTGCACAGCATTGCCTT
CTTTTGTCACGATCGTGCGCTTCTTTTCAATTAGAAAGGAAACACGCAGA
ACAGATCACCGAGTTGCGCCTCTCACACATTTTATGACTGCTTTGGCAAT
GGGCTTGCGATGTGTTCACGTTGAACTTCGTCCGTTTGATCGCTTTTCTT
CTCGTGAACGTTTCAAATGACCTGGGCCGGTGCTGCCTTATCCACGATTG
TCGCATGTTGCCCCGGTGTTTAGTTGAGATCCTCATGGTTATTCTGACTG
TGGTGTGGGTTCAAATCTCTCCGGTGGATTCTTGCTCCGGTGGAGTTCTT
GCAATCGATACGTGATGTACACAACATTCAGTAACGACGACAGAGGGAAG
GGACTGCTGATTGTAATATAAATTTGGTTTGAACGCAAGCACCGCAAGGG
GAAAGATGGGAAGGAAGAACAAAGGACTTCTGCGTTTCTCTTCCTCCAGT
AATACATCGGCTGGTGCTAGTGTGTGTTCCTCCCATCTATCGCGGCGCCG
CAAGTCTACACACCTTTCAGTAAGCATGTTTTATGGGCCAGCCCAGGTCA
CGCAGGCCTTTCGCACAGGATCTCGTTTTTTTTGTGTATGGGACGAACAT
AGATATAAACACACCGCATGAAGCGACGCTGCGAAAACCACCGCCGTGCT
CTCTACGGTGTAAAAACGTGTTGGAAACTGAAGACAATATTGTGTCAACA
TCGAACCTCATCGCATCAAAACCCAGGGTTTCGAGACCGTGCTGGATCTT
TTGGACGACGCATGCCAGGGTCTGCTCGAGAAATGCCGCGCAGGGGAAGC
GTGACGCCGACACATGATATACAT
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Coding sequence (CDS) from alignment at Scaffold_340:303852..308925-

>EsuBft839_8a-0001 ID=EsuBft839_8a-0001|Name=EsuBft839_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=777bp|location=Sequence derived from alignment at Scaffold_340:303852..308925- (Ectocarpus subulatus male Bft15b)
ATGGTCCAAGCAGTAGAACCAGGAAGGGCTCTCACAAGCTTCATAGTTTT
GTCCGCCCTAGCGTCGCGTTTCTGCAGCGCATTTGTTGCTCCCCGGCTTG
GAGGACCGGCACCCCTCCGTGCTTCCCTTCGTTGGAGCATCCCCAGAGTT
GCTCGGGCCGCCGCAACCGCGAGCATCCCGCCGGTCAACGCTGGGAAACG
GCCAACGTCGCTGGTGATGGCGGGAGAAGGCGGCAAGACGCGGGTCCTTT
TCGTTTGCCTCGGCAACATTTGCAGAAGCCCTACGGCCGAAGCTGTTTTC
AAACAGGTGACCTCCAAGGCAGGGGACGCAGACAAGTTCGAAATCGACTC
GTGCGGGACCGGAGGAGGAAATCCAAGTTGGTACAAAGAGGGCGGGGAGA
GCTATCACACAGGGGATTCCCCGGATGCTCGAATGACGGCTGCCGCGGCA
AAAAGAGGGGTGATGCTTAGCGGGGCCTCGCGGCCTCTGACTCCGGGTGA
TTTCGATAAGTTCGACCTCGTCGTGGGTATGGATGAGGCGAACACCAAGG
CGATGTCAACTGCCGCCGAGCACTGGGGCAAGAGCCAGGAGGCGATCTCG
AAGCTGCGGACGATCACTTCCTACTGCAGGTCGAGCGGCGACGTGAAGAG
CGTCCCGGACCCATACTACGGCGGACCTCAGGTCGGCAAGAGTGCTGGTG
GTTTCGAGACCGTGCTGGATCTTTTGGACGACGCATGCCAGGGTCTGCTC
GAGAAATGCCGCGCAGGGGAAGCGTGA
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