EsuBft839_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft839_6a-0001
Unique NameEsuBft839_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:277747..279311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft839_6
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsTRANSMEMBRANE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length70
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft839_6aEsuBft839_6aEctocarpus subulatus male Bft15bgeneScaffold_340 277747..279311 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_6a-0001-exonagat-exon-46609Ectocarpus subulatus male Bft15bexonScaffold_340 277747..278104 +
EsuBft839_6a-0001-exonEsuBft839_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 278962..279311 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_6a-0001-cdsEsuBft839_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 277747..278004 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_6a-0001-exonagat-three_prime_utr-22126Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_340 278005..278104 +
EsuBft839_6a-0001-exonagat-three_prime_utr-22127Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_340 278962..279311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_6a-0001EsuBft839_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 277747..278004 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft839_6a-0001 ID=EsuBft839_6a-0001|Name=EsuBft839_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=708bp|location=Sequence derived from alignment at Scaffold_340:277747..279311+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATATATACTTCACACTTCACTCCTCGCTCACTTTTCTACGTCGGC
CATCACCCAGATCCGTCTCAGAGACTCTTGGGGCAGGCCGCTCTTGGAGA
GCGTGCTCGCAGCCTTCGCGGGGCTGATGGGGGCCCCGTCGGGGCTTAGC
TTGGAGAACGCCCGGTTGTACCTGTCCCGCTCGACTCTCGACATCTCGAA
CAGGCCTGCGAATCGATTCGGCAAGCAGGCGTGCACCACGGCGGTAAGGG
AGGCGTGAGGTAACTTCCACCAGGAATCGACATGAAAAAAATTGGCCATG
ACGGCGGGGCGGAGGCAAAGACTCTCACGTGTATTTGAGGCTGCGACGGG
CGGAAGAGTTGCTGCTGCTTCGGCTTCTGCTGCGTCCGCCGTTCTTTCGC
TCCCCCCTTTTTTCTTTAGCTTGTGATTATCGGCACCGTCCGCACCTTCC
TGTTTAGCAGCTTCCACGGTTGTGTATGGATGCAGCGAAGGACAAAGCAA
AGTGATCTTCAGGTACTTCGGTTGAGGAAGGGTTAAAATCATGCCTTGGC
CGAAAAGCGTATCTTGGACAACATCTTCGATCCGCGCTCCATCAGTTTGT
GATGTTAGATCCGCCGTTCTTATCAGCTATTGTGGTTCTTGCACATCAGT
ATGGTTGGCAGGCGCACCAAAAGAATCCAACTGAAATCAATTTTCAAAAT
TGCGAATT
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protein sequence of EsuBft839_6a-0001

>EsuBft839_6 ID=EsuBft839_6|Name=EsuBft839_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=85bp
MQYILHTSLLAHFSTSAITQIRLRDSWGRPLLESVLAAFAGLMGAPSGLS
LENARLYLSRSTLDISNRPANRFGKQACTTAVREA
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mRNA from alignment at Scaffold_340:277747..279311+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft839_6a-0001 ID=EsuBft839_6a-0001|Name=EsuBft839_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1565bp|location=Sequence derived from alignment at Scaffold_340:277747..279311+ (Ectocarpus subulatus male Bft15b)
ATGCAATATATACTTCACACTTCACTCCTCGCTCACTTTTCTACGTCGGC
CATCACCCAGATCCGTCTCAGAGACTCTTGGGGCAGGCCGCTCTTGGAGA
GCGTGCTCGCAGCCTTCGCGGGGCTGATGGGGGCCCCGTCGGGGCTTAGC
TTGGAGAACGCCCGGTTGTACCTGTCCCGCTCGACTCTCGACATCTCGAA
CAGGCCTGCGAATCGATTCGGCAAGCAGGCGTGCACCACGGCGGTAAGGG
AGGCGTGAGGTAACTTCCACCAGGAATCGACATGAAAAAAATTGGCCATG
ACGGCGGGGCGGAGGCAAAGACTCTCACGTGTATTTGAGGCTGCGACGGG
CGGAAGAGGTGGGTTGAGACGCGCGCGTAGGCGAGAAGGGGGGTAACCAT
GGAGCTCTCGTTGCCTCAGAGCATTGGGCATCCCCTTGTAACGTGAGAGT
GTTTGAGGCTGCGACGGGCGAAAGAGGTGAGTTGAGACGCGCGCGTAGGG
GAGAATATGGGCACCATGGAGCTTTCGTTGCCTCAGTGAATGGGGCATCT
ACTTGTTACGTAAGACGCAGTTTGACATTCGTCGGTTGTTCCCAGGCACG
GATGGGCACGAAATTTGATTGTCGTTTTCGGAATGAGCTACGGTAGTTCC
ACAGAGGAGTTCACCCCGAACGTACGTGCCACGACATCTAAGACGTGTAC
CTTAGCTCGAGTCACATCGAAAGTTTTCTGGATCTATTCGTTTCGGGAAG
CGGGGAGTATGGCGATAGGGGGACAGCTGCTCCGTCGCAGACTGACGACC
AATTGGTGTATTGGAACACGTGCCATACGTGCGTGCCATGTTTCCCCTTG
CGTTGATCTCACCAGGACAGCCCGAATCCTGCCGACGGTTAATGCTGGGC
AAGTCATCTTCGAACGTCACCCGGACTACGTGAACAGCTCTTCACACACA
TCTAGTTGCAAAAATTCAGGAAGAACGGATTGCATCGATGAGACTTCCTG
AGGACCTCCGTTTTCCTTATCGTCACGTTTGTGGTCTAGCCTCGACGCCT
TTCCTCCTCCCTCGACGTCAACATCTTCGCCCTCGTTTGCTGCTGCCGCC
GACTCTGCCGCTGCATGTGCTTTGACCTGCTCTCCCTTCTTCTCCTTGCC
CTTCTTTTCCTTCTTCTCCTTGCCCTTCATCTTCCTTTCGCCCTTCTGCT
CGTCTGGTGTTCTAGTTGCTGCTGCTTCGGCTTCTGCTGCGTCCGCCGTT
CTTTCGCTCCCCCCTTTTTTCTTTAGCTTGTGATTATCGGCACCGTCCGC
ACCTTCCTGTTTAGCAGCTTCCACGGTTGTGTATGGATGCAGCGAAGGAC
AAAGCAAAGTGATCTTCAGGTACTTCGGTTGAGGAAGGGTTAAAATCATG
CCTTGGCCGAAAAGCGTATCTTGGACAACATCTTCGATCCGCGCTCCATC
AGTTTGTGATGTTAGATCCGCCGTTCTTATCAGCTATTGTGGTTCTTGCA
CATCAGTATGGTTGGCAGGCGCACCAAAAGAATCCAACTGAAATCAATTT
TCAAAATTGCGAATT
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Coding sequence (CDS) from alignment at Scaffold_340:277747..279311+

>EsuBft839_6a-0001 ID=EsuBft839_6a-0001|Name=EsuBft839_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=258bp|location=Sequence derived from alignment at Scaffold_340:277747..279311+ (Ectocarpus subulatus male Bft15b)
ATGCAATATATACTTCACACTTCACTCCTCGCTCACTTTTCTACGTCGGC
CATCACCCAGATCCGTCTCAGAGACTCTTGGGGCAGGCCGCTCTTGGAGA
GCGTGCTCGCAGCCTTCGCGGGGCTGATGGGGGCCCCGTCGGGGCTTAGC
TTGGAGAACGCCCGGTTGTACCTGTCCCGCTCGACTCTCGACATCTCGAA
CAGGCCTGCGAATCGATTCGGCAAGCAGGCGTGCACCACGGCGGTAAGGG
AGGCGTGA
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