EsuBft839_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft839_5a-0001
Unique NameEsuBft839_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:273018..277285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LN74
ProteomeIdEsuBft839_5
Protein domainsIPR000261
Protein domainsSSF47473
Protein domainsIPR011992
Protein domainsIPR018247
Protein domainsIPR002048
Ownerapollo_admin@sb-roscoff.fr
Noteintersectin-1 os:mus musculus gn:itsn1 pe:1 sv:2 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length894
Hectar predicted targeting categoryother localisation
Evalue1.08e-161
EggNOG OGsKOG0998@1|root,KOG1029@1|root,KOG0998@2759|Eukaryota,KOG1029@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameENAH
KEGG rclassRC00049
KEGG koko:K01196,ko:K03099,ko:K05746,ko:K12483
KEGG ReactionR02109,R02111
KEGG Pathwayko00500,ko01100,ko01110,ko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04062,ko04068,ko04072,ko04144,ko04150,ko04151,ko04320,ko04360,ko04510,ko04540,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04722,ko04810,ko04910,ko04912,ko04915,ko04917,ko04926,ko05034,ko05160,ko05165,ko05200,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map00500,map01100,map01110,map01521,map01522,map04010,map04012,map04013,map04014,map04062,map04068,map04072,map04144,map04150,map04151,map04320,map04360,map04510,map04540,map04630,map04650,map04660,map04662,map04664,map04714,map04722,map04810,map04910,map04912,map04915,map04917,map04926,map05034,map05160,map05165,map05200,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231
EC2.4.1.25,3.2.1.33
Descriptionpositive regulation of caveolin-mediated endocytosis
COG categoryU
CAZyGH13
BRITEko00000,ko00001,ko01000,ko04131,ko04147
Cross References
External references for this mRNA
DatabaseAccession
GO0006897
GO0055085
GO0016020
GO0005905
GO0005509
GO0051056
GO0048522
GO0042981
GO0070064
GO0032947
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft839_5aEsuBft839_5aEctocarpus subulatus male Bft15bgeneScaffold_340 273018..277285 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_5a-0001EsuBft839_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 273018..277285 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_5a-0001-exonagat-exon-46606Ectocarpus subulatus male Bft15bexonScaffold_340 273018..273206 -
EsuBft839_5a-0001-exonEsuBft839_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 273970..274050 -
EsuBft839_5a-0001-exonagat-exon-46605Ectocarpus subulatus male Bft15bexonScaffold_340 275178..275348 -
EsuBft839_5a-0001-exonagat-exon-46607Ectocarpus subulatus male Bft15bexonScaffold_340 275597..275743 -
EsuBft839_5a-0001-exonagat-exon-46608Ectocarpus subulatus male Bft15bexonScaffold_340 276980..277285 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_5a-0001-cdsEsuBft839_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 273018..273206 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft839_5a-0001 ID=EsuBft839_5a-0001|Name=EsuBft839_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=894bp|location=Sequence derived from alignment at Scaffold_340:273018..277285- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCTAGTCGTGTGCTCCACGGCAAAGCAAATGCCGTTACCTGGCAA
ATTGCCCAAGTGCCTCCGGACACCTCCAATCGGCCGCCAAGATCAGCACC
TGCCGGAAGAAGTCCAGCCTGGCGGTGGGAGGAATGCTACAAATATCCCA
GAGAGGAAGCCAGAAAAAAATCCTTCGACACCGACGTCGAAAAGTAAGTA
CTCCCCTCCAACGGACTTCAAACAAGCAACGAAGGATTTCAAGAACGGAG
ATATGGAGGCCAACAAATATCTTCCGATTATACGGGTGAGGTTGCTCTGG
GTAAAGGCGGCTTTCGGAAAGAAAGAGCTCGCGAAGATGTGGCCTAAACT
GCTCCCGAGGCTGCCTCCGGAGAAGGCTCGGGAGCTAGCTGAGGCGGCCG
GATTGGATTTCGAGGCCCTCAGCGAGTCGGCGACGAGCCCGGCCCCGCGG
CAGGTTGGGCTGAAAGACGCCACTGCGTCTTACAAGAGGGGTGACATGGG
CGCGAGGGAGTACTACGAGAACGTGCTGCTTGAGGTGTTTGGGGACAAGC
TCGCTGGGATGCTGCCCGACATTCTCAAAGCCCTCCCGCCAGACCGTGCT
GAAGCTCTGGCGGCCGTCGCGAAGGCGGACGACGTGCGGCGACTAGCCGA
GGACACACCCCACGAATGGGCGATGAGTCTTGACGACCGACGGGTTTACG
ACAAGGCCTTCGTGAAGCTGGATAAAGACCGTGATGGGTTTCTGTCTAGC
GCGGAGGCGAGGCCAGTCCTCAAGAAGGCTGTCGGAAACCATCTCGGGGA
GGCTCAGCTGGGAGACCTGTGGAAGATGGCTGACATCGATCGGGATGGCC
GACTTACTAGGGAGGAGGTGAGGACTGCCCGCGTCGATTCGTAG
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protein sequence of EsuBft839_5a-0001

>EsuBft839_5 ID=EsuBft839_5|Name=EsuBft839_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=297bp
MHLVVCSTAKQMPLPGKLPKCLRTPPIGRQDQHLPEEVQPGGGRNATNIP
ERKPEKNPSTPTSKSKYSPPTDFKQATKDFKNGDMEANKYLPIIRVRLLW
VKAAFGKKELAKMWPKLLPRLPPEKARELAEAAGLDFEALSESATSPAPR
QVGLKDATASYKRGDMGAREYYENVLLEVFGDKLAGMLPDILKALPPDRA
EALAAVAKADDVRRLAEDTPHEWAMSLDDRRVYDKAFVKLDKDRDGFLSS
AEARPVLKKAVGNHLGEAQLGDLWKMADIDRDGRLTREEVRTARVDS
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mRNA from alignment at Scaffold_340:273018..277285-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft839_5a-0001 ID=EsuBft839_5a-0001|Name=EsuBft839_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4268bp|location=Sequence derived from alignment at Scaffold_340:273018..277285- (Ectocarpus subulatus male Bft15b)
ATGCACCTAGTCGTGTGCTCCACGGCAAAGCAAATGCCGTTACCTGGCAA
ATTGCCCAAGTGCCTCCGGACACCTCCAATCGGCCGCCAAGATCAGCACC
TGCCGGAAGAAGTCCAGCCTGGCGGTGGGAGGAATGCTACAAATATCCCA
GAGAGGAAGCCAGAAAAAAATCCTTCGACACCGACGTCGAAAAGTAAGTA
CTCCCCTCCAACGGACTTCAAACAAGCAACGAAGGATTTCAAGAACGGAG
ATATGGAGGCCAACAAATATCTTCCGATTATACGGGTGAGGTTGCTCTGG
GTAAAGGTAGAGACAGACGGTATATGTACCGATGACTGATTTCATCAAGT
TGTGTAGATTGAGTGTCGCGACAATCGGTAGCCTCAATCTTGGTGGCGCG
CATGGCTTTGACGTCTGAGTTGGTTTTACAAGCCCTGTGAGACGAAGAAC
GACGCCTCTCGCAACGATTGGCATACGTGGCGAATGGTCGCTGTATTGAG
GGCATGCGAGGTGGGCTCGAGGACACCGTGACATGTTTTCGAGCCTACAT
ACATGACGGCATGGCTTTGACGTCTGAGTTGGTTTTACAAGCCCTGCGAG
ACGAAGAACGACGCCTCTCGCAACGATTGGCATACGTGGCGAATGGTCGC
TGTATTGAGGGCATGCGAGGTGGGCTCGAGGACACCGTGACATGTTTTCG
AGCCTACATACATGACGGCATGGCTTTGACGTCTGAGTTGGTTTTACAAG
CCCTGCGAGACGAAGAACGACGCCTCTCGCAACGATTGGCATACGTGGCG
AATGGTCGCTGTATTGAGGGCATGCGAGGTGGGCTCGAGGACACCGTGAC
ATGTTTTCGAGCCTACATACATGACGGCATGGCTTTGACGTCTGAGTTGG
TTTTACAAGCCCTGCGAGACGAAGAACGACGCCTCTCGCAACGATTGGCA
TACGTGGCGAATGGTCGCTGTATTGAGGGCATGCGAGGTGGGCTCGAGGA
CACCGTGACATGTTTTCGAGCCTACATACATGACGAGTTGCTTCCGGCCT
TTTGCGTTTTTTATCGTCTCAGTCTTCTACTCCTCGTTGTGTGTCTTGCG
CTTTGTTCTCTCCCAGGAACGGCGCCGATGAGGGTAGCTTTCGCAAACCT
TTCTACCTGACAATGCGACATTGCTGCACAATACCCATCTGGTATCCATT
CACACTACCTACTCCCTGTCTCAAGAACCTGGGATGAGGGATCTCGCGAA
GAGCTGTTCTAGGCGGCTGGCTAACTCCTTTCAGCAGAATCAACGGTGCA
ATCCTGTTTGTCATGTCATTCTTCCTCCTGCGCATATACTTGCCAGCGGT
TTGATCCTTTGTCAACCTGTAATCTTCGCCAGGGAGAATTATTAAAGAGC
TAGTACCCCAACATGTGACCCGACCTCCTGCCCGCTCTGTCCGCTCTCTG
TTGCGCGAGTGATTGACGCCCATTGATCCAATTCACTCGTAATAATCCAC
TCCTGTTTCTCACTGCCCCCTCTGCTGCCTCGTACCGCCCAGGCGGCTTT
CGGAAAGAAAGAGCTCGCGAAGATGTGGCCTAAACTGCTCCCGAGGCTGC
CTCCGGAGAAGGCTCGGGAGCTAGCTGAGGCGGCCGGATTGGATTTCGAG
GCCCTCAGCGAGTCGGCGACGAGCCCGGCCCCGCGGCAGGTGAGGACATG
GATGTACTGGTTGCTGCTTGCTTACTGACGAATCGTTGAGTGAGTTCTGC
ACACGGCGCAAGCAGCCATCTGGCTTCGTGCGCATTATGAGATTTGTAAT
GGCATAAAGATACACAGTAAGAGAGCACACGGCGTCATGTTGAAACTCTG
TCGCTTTGTCATCCAGCAACACCTTCGATCGATTCCGACAGCCACGGGAC
CACCCGAAAAACAGCGCGACGCCGATCTATTCCGCAGGTTGGGCTGAAAG
ACGCCACTGCGTCTTACAAGAGGGGTGACATGGGCGCGAGGGAGTACTAC
GAGAACGTGCTGCTTGAGGTGTTTGGGGACAAGCTCGCTGGGATGCTGCC
CGACATTCTCAAAGCCCTCCCGCCAGACCGTGCTGAAGCTCTGGCGGCCG
TCGCGAAGGTAAGGAACGGACCGCCGTCTGCGCCCACCTACGTCGAAGTT
TGTTAGAATTCCAGCCCAGTTTCGCGTTGGACTGCTATTTTTGATGATTC
CTATTTCGGGTCGATGATGAACCCAGACGTTTTGGGGAGCCCCCTGCCTT
CTCAATAGGCATTGTTCCTCCAGCAACATCCCGAAGTGAAAAAAAAATGG
TTCGTTGTTGTGGCATTTTCTCAAGCAAACATTGACCACAAGGCAAACAC
GCAAGGCGTGCTTCCTCGTTGGTGGAAATACCCTCCTGGTTGTACGGTAA
GGGGCAGGTGGCAATTCAGTCTCGATTAAGGTCGCCTCGACGACAGGTCA
AGGGCAAAGAGGGTTGCGAAAAACAGGGTTTTCACAGCTGTCATGAACTC
ACAGCTGGGCTGCCGTTAATCTCGTCTTGCCCTGTTCATTTTGTCCTTCG
GCTGGCTGAATTCGGTGGTCTTGGCAAGCGCGATATTTACTTCCACAGCA
AGGAACAAGTGTCTATCTAGAGTTCGAAAATGGTCGTAAAACGACAAATG
CAGACCACTACCTAGCGACGGCATTGAGAGAATGAAGTAGGGAAGACAGA
ACACGGGTATGACTCCCTGCCACAGCAACAGCCTTATTGTTCCCAAACTT
CATTCGAGTAAAAGGACGATGAAAATGTTCCAACATTCCCGAAGTGTTTT
ACTCGACCGCGGTCACGGAGGACCAAACCCTTGCGCGGACAGCAGTGCGT
GGCCTAGGTTTCAGGTGATCAAGTCCAATACAACACCACAGGTGCTCGGA
TCGGTCCCTTTTTTCAATGGGTGCATATCCCAGCCTTTTTGTTTTGAGTT
TCCCGACTAAATCAACGATTGGGTTGTCCGGGTCTCACACGTTTTGTTGT
TTAATTTTCGTTCCGTTCATGGTGATGGGGGGAATGACGCGGGGGTGGGG
TACCTCTTGTAAATCTGGTTGAGGGAAAAATCCGGGGCACTAGGGCAGTG
GCTCCACCGCTTTGCACTCCAGGCCAATGTTACCGACCACGACAACAACA
ACAACAACAACAACAACATTGGCCGAAACAAATAATCGGTGTGCCCTGTT
TCATTGCTTTTCGATGAACGGTGTGATAGGCACAGGCGGACGACGTGCGG
CGACTAGCCGAGGACACACCCCACGAATGGGCGATGAGTCTTGACGACCG
ACGGGTTTACGACAAGGTGAGATGTTGGTGGCCCCGTCTTCCGCGGCGTG
AAAGTGTTAATTTGTCATTGTGGTGCGTGGCTCAACCGTTCGTGCGTGTA
GGCAACTCCCATGCGCACTCCGGGAATGTCGCGTTCTAGCGAATGTGACG
CTTTGTTGGCGTCGTTGCCAGTTCAAATCCACGAACGATGTACCGATCTC
CGTAGGAGACGCCGATCGCCTTTTGACACTATCAAGGGTTGCTGCTCTCA
CATCTTTCCATTCCCCTGGAAAGTAAAGAACAGCAGTAGAGAAGCCAGAA
GACGGAATCCATCCCATCCACGTGCAAAAGCGCGATGTCCACGGCGTCAG
CGCTAGGTCGTCGCCGAGAAAGTGCCACACGCCGTACACGCATGGAGCAC
TCCCGCCCCCTCCCGTGAACTTCCACACCGTGTGTGCCGCGATGGCCTTG
TAAGGAAGTGACAGACGGGTTCTTTCTCGTGGGGCCGCACATCTTCATCG
CTTGACTCACTCCCAGCCCGGGGTTTATCTCTCTTGCCCGCCCTAGCACT
TCATATTCCTGAAATGCTGTACACAACTTGGTAAGGTCAGACAAAAGAAA
CGTCTGCCTATGGCCGTGATTCCCTGGCTCTCACCATTGTACACAGATTC
GAAAATCTGTTCGACAATGCCTGACTTCATTGCATGGGCCACGACTGATC
ACGCGGAGCCTCGCCCCTCCACCTCAACCTCATCCCTATCTCTATCCTGA
AACCCGTTTCCGGTGCCCTGGGCGGCAAGGCCTTCGTGAAGCTGGATAAA
GACCGTGATGGGTTTCTGTCTAGCGCGGAGGCGAGGCCAGTCCTCAAGAA
GGCTGTCGGAAACCATCTCGGGGAGGCTCAGCTGGGAGACCTGTGGAAGA
TGGCTGACATCGATCGGGATGGCCGACTTACTAGGGAGGAGGTGAGGACT
GCCCGCGTCGATTCGTAG
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Coding sequence (CDS) from alignment at Scaffold_340:273018..277285-

>EsuBft839_5a-0001 ID=EsuBft839_5a-0001|Name=EsuBft839_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=894bp|location=Sequence derived from alignment at Scaffold_340:273018..277285- (Ectocarpus subulatus male Bft15b)
ATGCACCTAGTCGTGTGCTCCACGGCAAAGCAAATGCCGTTACCTGGCAA
ATTGCCCAAGTGCCTCCGGACACCTCCAATCGGCCGCCAAGATCAGCACC
TGCCGGAAGAAGTCCAGCCTGGCGGTGGGAGGAATGCTACAAATATCCCA
GAGAGGAAGCCAGAAAAAAATCCTTCGACACCGACGTCGAAAAGTAAGTA
CTCCCCTCCAACGGACTTCAAACAAGCAACGAAGGATTTCAAGAACGGAG
ATATGGAGGCCAACAAATATCTTCCGATTATACGGGTGAGGTTGCTCTGG
GTAAAGGCGGCTTTCGGAAAGAAAGAGCTCGCGAAGATGTGGCCTAAACT
GCTCCCGAGGCTGCCTCCGGAGAAGGCTCGGGAGCTAGCTGAGGCGGCCG
GATTGGATTTCGAGGCCCTCAGCGAGTCGGCGACGAGCCCGGCCCCGCGG
CAGGTTGGGCTGAAAGACGCCACTGCGTCTTACAAGAGGGGTGACATGGG
CGCGAGGGAGTACTACGAGAACGTGCTGCTTGAGGTGTTTGGGGACAAGC
TCGCTGGGATGCTGCCCGACATTCTCAAAGCCCTCCCGCCAGACCGTGCT
GAAGCTCTGGCGGCCGTCGCGAAGGCGGACGACGTGCGGCGACTAGCCGA
GGACACACCCCACGAATGGGCGATGAGTCTTGACGACCGACGGGTTTACG
ACAAGGCCTTCGTGAAGCTGGATAAAGACCGTGATGGGTTTCTGTCTAGC
GCGGAGGCGAGGCCAGTCCTCAAGAAGGCTGTCGGAAACCATCTCGGGGA
GGCTCAGCTGGGAGACCTGTGGAAGATGGCTGACATCGATCGGGATGGCC
GACTTACTAGGGAGGAGGTGAGGACTGCCCGCGTCGATTCGTAG
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