EsuBft839_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft839_4a-0001
Unique NameEsuBft839_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:267590..269695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog13735.ENSPSIP00000000104
ProteomeIdEsuBft839_4
Protein domainsIPR027124
Protein domainsPTHR23227
Protein domainsIPR005135
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl33208|Metazoa
Length174
Evalue6.92e-30
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3CYKV@33213|Bilateria,487I3@7711|Chordata,4962T@7742|Vertebrata,4CKCN@8459|Testudines
Date last modified2016-06-13
Date creation2016-06-13
KEGG rclassRC00004,RC00039,RC00041
KEGG koko:K04257,ko:K13506
KEGG ReactionR00851,R09380
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04740,map00561,map00564,map01100,map01110,map04740
KEGG ModuleM00089
EC2.3.1.15
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04030
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft839_4aEsuBft839_4aEctocarpus subulatus male Bft15bgeneScaffold_340 267590..269695 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_4a-0001EsuBft839_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 267590..269695 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_4a-0001-exonEsuBft839_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 267590..267682 +
EsuBft839_4a-0001-exonagat-exon-46604Ectocarpus subulatus male Bft15bexonScaffold_340 267747..267807 +
EsuBft839_4a-0001-exonagat-exon-46602Ectocarpus subulatus male Bft15bexonScaffold_340 267866..268271 +
EsuBft839_4a-0001-exonagat-exon-46601Ectocarpus subulatus male Bft15bexonScaffold_340 268449..268908 +
EsuBft839_4a-0001-exonagat-exon-46603Ectocarpus subulatus male Bft15bexonScaffold_340 268967..269695 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_4a-0001-cdsEsuBft839_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 267590..267682 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft839_4a-0001 ID=EsuBft839_4a-0001|Name=EsuBft839_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1749bp|location=Sequence derived from alignment at Scaffold_340:267590..269695+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCGAGAGAGACACGAGGCCGCAGCGGCCGTCAAGGCGGCTGCGAA
GAAGAAGGCACGAGAGGGCGACCTATCGTTCGGCACGTTTAACATTTGTT
CGGCGACCGGCTGTGATGTGATCGGACTTCAGGAGACCCGACGAGAGGAG
CAAGGNGGTTCAATTGCACACGACGGGTACGTGATCATCTGGAGTGGCGC
CCGTGCTGGCACGAAGGACAAGAGGGGCGTACGCGGTGTGGGCATAGCGA
TCAAGGAGGCCATGTGGGAGAGTGTGGGCGAGGACGGTAGGACGGTGGAG
TGCATTAGCCCGAGGCTGATGAAGGTGCGTCTACAAATTGGCCGCACCTG
CGGAGTAACTTTCGTGGTGGGGTACGCCCCCACGGAAACTGTCCGCACCA
CCGCGGGCGGAGATGTGAACGCCAAGGACTCCTTCTGGACTGCTCTCGAC
GCAGCGATCCGGGAGGTTCACAGCCGTCACCATCTCGTGGTGCTAATGGA
CGCCAACGCACGCACTGGTAGGAGGCGAGACGGGTGCTGCGATGCCAAGA
TTATGGGCACACGGACCGGCGTTTCGTNCAACGGGGAACGACTTCTTGGA
CTGGCATCAGACAACCAGCTCTCCCTGACCAACACCTACTTCCGAACACC
GAAAGGTGGAGTGCAGCACACATTCCAAAGCTCCATCAAGGGGAAGGAAA
AGTACCGCCTCGACTTCATCCTCATGCGTCAGACGGACCGGCGTTTCGTG
CGTAATGTCTCCGTCAAACGTGTCGAACGTGTCGACTTGAAAGACTCTGA
CCACAACCTCGTGCTTACGACTGTCCGCCTCCCCCCCCGTGTCGCACCCA
ACCGACGAGTGCGGGGGAACAGCCGAAGCAGCCGGATCCGTATCGACCTC
GAGCGGTTGAGGAAGGACAAACACCTACGGGTCGCCTTCCAAAACAGGGC
CTCCATCCGCCCTCCGCCCACGGCGCTCAGGCGGCCAACGGGAGAGACCG
CCGCCGAGCTGACGGCTACGGCTGGTACACGGGCGAAGCGCAGCACGAGA
TCTCCGAAGCGTGTAAGGAGATCAAGGCGGCCCAGCAGCAACTGCGCGGG
GCCTCAAAGAACAGCGCCTACGACCCTGAAGGCGATGCTCAAGGCGGCGC
GTCAGAAGCGCAGCATCGCGAGGTGGAGAGCACTGGAAACGTTCTTCGAG
GGCTATGTACGGCAGCTCGAGAAGAAGAGCCGCGATGGGGATCAGGCGGG
TTTCTACAAGCACCTGAAGATGATCGACTTCGAAGGTAAGAGGTCGTTCA
CCTCTCAGAACATCAAGGACGAGAACGGCGAGGTCCTTCGGGACCCCACG
TTTATTCGCCAACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACTAA
GTCGCCGACCATCAACCTGCATGCGGCTGACAAGATCAAGCGGTGGCCCA
CGTGCGTGCCACACCACGACATCCCATCTCTACTTGAGGTTGAGGAAGCG
GTACGGGAAATAGCCAACAGAAAGGCCGTCGGGCCGGACGACCTACCGGC
TGAGCTGATCAAGCTTTTCCTGGACGGAGATCAAGGTCTCCTCCGCGAAT
TCCACGCCATTGTCGTGGACGTGTGGCAGACAGGGGGAGTAACACAGCAG
TGGAAGGATGCCACCATCAAAATGCTGTTCAAGAAGGGGGACACGATGGA
GTGCGGCAACTACCGGGGCATCTCTCTCGTCGCACACGCCGGCAANNNN
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protein sequence of EsuBft839_4a-0001

>EsuBft839_4 ID=EsuBft839_4|Name=EsuBft839_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=583bp
MDRERHEAAAAVKAAAKKKAREGDLSFGTFNICSATGCDVIGLQETRREE
QGGSIAHDGYVIIWSGARAGTKDKRGVRGVGIAIKEAMWESVGEDGRTVE
CISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALD
AAIREVHSRHHLVVLMDANARTGRRRDGCCDAKIMGTRTGVSXNGERLLG
LASDNQLSLTNTYFRTPKGGVQHTFQSSIKGKEKYRLDFILMRQTDRRFV
RNVSVKRVERVDLKDSDHNLVLTTVRLPPRVAPNRRVRGNSRSSRIRIDL
ERLRKDKHLRVAFQNRASIRPPPTALRRPTGETAAELTATAGTRAKRSTR
SPKRVRRSRRPSSNCAGPQRTAPTTLKAMLKAARQKRSIARWRALETFFE
GYVRQLEKKSRDGDQAGFYKHLKMIDFEGKRSFTSQNIKDENGEVLRDPT
FIRQRWARWFHKLLNTKSPTINLHAADKIKRWPTCVPHHDIPSLLEVEEA
VREIANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGGVTQQ
WKDATIKMLFKKGDTMECGNYRGISLVAHAGXX
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mRNA from alignment at Scaffold_340:267590..269695+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft839_4a-0001 ID=EsuBft839_4a-0001|Name=EsuBft839_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2106bp|location=Sequence derived from alignment at Scaffold_340:267590..269695+ (Ectocarpus subulatus male Bft15b)
ATGGACCGAGAGAGACACGAGGCCGCAGCGGCCGTCAAGGCGGCTGCGAA
GAAGAAGGCACGAGAGGGCGACCTATCGTTCGGCACGTTTAACGTACGCA
CGCTCGCCTACAGCGGTAGGAACCCCCATCGGTCACAATGTGATGACGGT
CATGCAGATTTGTTCGGCGACCGGCTGTGATGTGATCGGACTTCAGGAGA
CCCGACGAGAGGAGCAAGGTTAGTTGCACACGACGGGTACGTGATCATCT
GGAGTGGCGCCCGTGCTGGCACCAAGGNGGTTCAATTGCACACGACGGGT
ACGTGATCATCTGGAGTGGCGCCCGTGCTGGCACGAAGGACAAGAGGGGC
GTACGCGGTGTGGGCATAGCGATCAAGGAGGCCATGTGGGAGAGTGTGGG
CGAGGACGGTAGGACGGTGGAGTGCATTAGCCCGAGGCTGATGAAGGTGC
GTCTACAAATTGGCCGCACCTGCGGAGTAACTTTCGTGGTGGGGTACGCC
CCCACGGAAACTGTCCGCACCACCGCGGGCGGAGATGTGAACGCCAAGGA
CTCCTTCTGGACTGCTCTCGACGCAGCGATCCGGGAGGTTCACAGCCGTC
ACCATCTCGTGGTGCTAATGGACGCCAACGCACGCACTGGTAGGAGGCGA
GACGGGTGCTGCGATGCCAAGATTATGGGCACGTACGGACGCGACATTAT
GAACACAACGGGGAACGACTTCTTGGACTGGCATCAGACAACCAGCTCTC
CCTGACCAACACCTACTTCCGAACACCGAAAGGTGGAGTGCAGCACACAT
TCCAAAGCTCCATCAAGGGGAAGGAAAAGTACCGCCTCGACTTCATCCTC
ATGCGTCAGACGGACCGGCGTTTCGTNCAACGGGGAACGACTTCTTGGAC
TGGCATCAGACAACCAGCTCTCCCTGACCAACACCTACTTCCGAACACCG
AAAGGTGGAGTGCAGCACACATTCCAAAGCTCCATCAAGGGGAAGGAAAA
GTACCGCCTCGACTTCATCCTCATGCGTCAGACGGACCGGCGTTTCGTGC
GTAATGTCTCCGTCAAACGTGTCGAACGTGTCGACTTGAAAGACTCTGAC
CACAACCTCGTGCTTACGACTGTCCGCCTCCCCCCCCGTGTCGCACCCAA
CCGACGAGTGCGGGGGAACAGCCGAAGCAGCCGGATCCGTATCGACCTCG
AGCGGTTGAGGAAGGACAAACACCTACGGGTCGCCTTCCAAAACAGGGCC
TCCATCCGCCCTCCGCCCACGGCGCTCAGGCGGCCAACGGGAGAGACCGC
CGCCGAGCTGACGGCTACGGTGATGTCGGCCGCTGCTGAGACCGCGCCGC
TGGCGAGGTGCGCACGAGGGCAGAGAGGCTGGTACACGGGCGAAGCGCAG
CACGAGATCTCCGAAGCGTGTAAGGAGATCAAGGCGGCCCAGCAGCAACT
GCGCGGGGCCTCAAAGAACAGCGCCTACGACCCTGAAGGCGATGCTCAAG
GCGGCGCGTCAGAAGCGCAGCATCGCGAGGTGGAGAGCACTGGAAACGTT
CTTCGAGGGCTATGTACGGCAGCTCGAGAAGAAGAGCCGCGATGGGGATC
AGGCGGGTTTCTACAAGCACCTGAAGATGATCGACTTCGAAGGTAAGAGG
TCGTTCACCTCTCAGAACATCAAGGACGAGAACGGCGAGGTCCTTCGGGA
CCCCACGTTTATTCGCCAACGGTGGGCACGGTGGTTCCACAAGCTTCTCA
ACACTAAGTCGCCGACCATCAACCTGCATGCGGCTGACAAGATCAAGCGG
TGGCCCACGTGCGTGCCACACCACGACATCCCATCTCTACTTGAGGTTGA
GGAAGCGGTACGGGAAATAGCCAACAGAAAGGCCGTCGGGCCGGACGACC
TACCGGCTGAGCTGATCAAGCTTTTCCTGGACGGAGATCAAGGTCTCCTC
CGCGAATTCCACGCCATTGTCGTGGACGTGTGGCAGACAGGGGGAGTAAC
ACAGCAGTGGAAGGATGCCACCATCAAAATGCTGTTCAAGAAGGGGGACA
CGATGGAGTGCGGCAACTACCGGGGCATCTCTCTCGTCGCACACGCCGGC
AANNNN
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Coding sequence (CDS) from alignment at Scaffold_340:267590..269695+

>EsuBft839_4a-0001 ID=EsuBft839_4a-0001|Name=EsuBft839_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1749bp|location=Sequence derived from alignment at Scaffold_340:267590..269695+ (Ectocarpus subulatus male Bft15b)
ATGGACCGAGAGAGACACGAGGCCGCAGCGGCCGTCAAGGCGGCTGCGAA
GAAGAAGGCACGAGAGGGCGACCTATCGTTCGGCACGTTTAACATTTGTT
CGGCGACCGGCTGTGATGTGATCGGACTTCAGGAGACCCGACGAGAGGAG
CAAGGNGGTTCAATTGCACACGACGGGTACGTGATCATCTGGAGTGGCGC
CCGTGCTGGCACGAAGGACAAGAGGGGCGTACGCGGTGTGGGCATAGCGA
TCAAGGAGGCCATGTGGGAGAGTGTGGGCGAGGACGGTAGGACGGTGGAG
TGCATTAGCCCGAGGCTGATGAAGGTGCGTCTACAAATTGGCCGCACCTG
CGGAGTAACTTTCGTGGTGGGGTACGCCCCCACGGAAACTGTCCGCACCA
CCGCGGGCGGAGATGTGAACGCCAAGGACTCCTTCTGGACTGCTCTCGAC
GCAGCGATCCGGGAGGTTCACAGCCGTCACCATCTCGTGGTGCTAATGGA
CGCCAACGCACGCACTGGTAGGAGGCGAGACGGGTGCTGCGATGCCAAGA
TTATGGGCACACGGACCGGCGTTTCGTNCAACGGGGAACGACTTCTTGGA
CTGGCATCAGACAACCAGCTCTCCCTGACCAACACCTACTTCCGAACACC
GAAAGGTGGAGTGCAGCACACATTCCAAAGCTCCATCAAGGGGAAGGAAA
AGTACCGCCTCGACTTCATCCTCATGCGTCAGACGGACCGGCGTTTCGTG
CGTAATGTCTCCGTCAAACGTGTCGAACGTGTCGACTTGAAAGACTCTGA
CCACAACCTCGTGCTTACGACTGTCCGCCTCCCCCCCCGTGTCGCACCCA
ACCGACGAGTGCGGGGGAACAGCCGAAGCAGCCGGATCCGTATCGACCTC
GAGCGGTTGAGGAAGGACAAACACCTACGGGTCGCCTTCCAAAACAGGGC
CTCCATCCGCCCTCCGCCCACGGCGCTCAGGCGGCCAACGGGAGAGACCG
CCGCCGAGCTGACGGCTACGGCTGGTACACGGGCGAAGCGCAGCACGAGA
TCTCCGAAGCGTGTAAGGAGATCAAGGCGGCCCAGCAGCAACTGCGCGGG
GCCTCAAAGAACAGCGCCTACGACCCTGAAGGCGATGCTCAAGGCGGCGC
GTCAGAAGCGCAGCATCGCGAGGTGGAGAGCACTGGAAACGTTCTTCGAG
GGCTATGTACGGCAGCTCGAGAAGAAGAGCCGCGATGGGGATCAGGCGGG
TTTCTACAAGCACCTGAAGATGATCGACTTCGAAGGTAAGAGGTCGTTCA
CCTCTCAGAACATCAAGGACGAGAACGGCGAGGTCCTTCGGGACCCCACG
TTTATTCGCCAACGGTGGGCACGGTGGTTCCACAAGCTTCTCAACACTAA
GTCGCCGACCATCAACCTGCATGCGGCTGACAAGATCAAGCGGTGGCCCA
CGTGCGTGCCACACCACGACATCCCATCTCTACTTGAGGTTGAGGAAGCG
GTACGGGAAATAGCCAACAGAAAGGCCGTCGGGCCGGACGACCTACCGGC
TGAGCTGATCAAGCTTTTCCTGGACGGAGATCAAGGTCTCCTCCGCGAAT
TCCACGCCATTGTCGTGGACGTGTGGCAGACAGGGGGAGTAACACAGCAG
TGGAAGGATGCCACCATCAAAATGCTGTTCAAGAAGGGGGACACGATGGA
GTGCGGCAACTACCGGGGCATCTCTCTCGTCGCACACGCCGGCAANNNN
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