EsuBft839_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft839_12a-0001
Unique Name	EsuBft839_12a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_340	contig	Scaffold_340:318984..321829 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft839_12
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	183
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft839_12a	EsuBft839_12a	Ectocarpus subulatus male Bft15b	gene	Scaffold_340 318984..321829 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft839_12a-0001	EsuBft839_12	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_340 320002..320832 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft839_12a-0001-exon	agat-exon-46626	Ectocarpus subulatus male Bft15b	exon	Scaffold_340 318984..319094 +
EsuBft839_12a-0001-exon	agat-exon-46627	Ectocarpus subulatus male Bft15b	exon	Scaffold_340 319979..321518 +
EsuBft839_12a-0001-exon	EsuBft839_12a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_340 321650..321829 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft839_12a-0001-exon	agat-five_prime_utr-14305	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_340 318984..319094 +
EsuBft839_12a-0001-exon	agat-five_prime_utr-14306	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_340 319979..320001 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft839_12a-0001-cds	EsuBft839_12a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_340 320002..320832 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft839_12a-0001-exon	agat-three_prime_utr-22122	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_340 320833..321518 +
EsuBft839_12a-0001-exon	agat-three_prime_utr-22123	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_340 321650..321829 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_340:318984..321829+
coding sequence from alignment at Scaffold_340:318984..321829+

spliced messenger RNA

>EsuBft839_12a-0001 ID=EsuBft839_12a-0001|Name=EsuBft839_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1831bp|location=Sequence derived from alignment at Scaffold_340:318984..321829+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGGTCTTGGACAAACAAGCGTGTCAACGACAGAACCTTCATCTATCACT
AGGAGCAAGCCACCGCCCACGGCATCACTCCTTGAAACTTGGCGTCAGCT
GGCATTACACGAGGATACAATGTCCAGCGGCAACATGGAACTCCTGGGCG
ACAATGTGGAAATCCTCGACTACGAACCCGAGGGCGAGGCTCCCACCGCA
GAGCAGTTCCCAGCGGCGAGTGCAGAAGACCAGAGCCCCCCCATGTCCAT
GGTGTTCACCGTCGATGATTTGCTGGACAACATCGCCACAGCAGATCCGG
CGGAACTGGAGCGGGCCTACAACACCGGACGAGTATCTCTGGAGGATATC
GTAGGAGCGGCCCATCTGTCGTCCGATTCCACCCTTTTCGTTCCTCCTTT
CTCGCTCCCGCCGGAAGGTAGATTAATCCTCTTGCCCCACGACGAGTTTA
TGGCGTACCAAAGGTTGAACGAGATGTGGTGCGACGGTCTTGCCGGGAAG
ATAGCAGAGGCGGAGGCGCGAGAGCAGGCGAAGCGCGAGGACGCGGAGCG
CTTGGCGGAACGGGAGGCTGCTCTGGCCGCTGCGGCGAGGAAGCAGGAGG
AGGAGCGTGAGGCTGTTCGGGCTGCTGCGGCGAAGAAGCAGGAGGAGGAA
CGTGAGGCTGCTCTGGCTGCTGCGGCGAGGAAGCAGGAGGAGGAGCGTGC
GGCTGTTCTGGCGGAGCGTGAGGCGTATCTCCAAGCGGCTAGGGCGAAGC
AGGGGGCGCTCCGATCGCGGCTGAAGGAGCTGGAGCCCCGCCACCAGGAC
CCGCGAGCAGCCCCCCACCCCCGTCGCCGTGTTGTCGTCCCCCCCCCCCA
CGCAATCACAGGTGCACCTTGGTCCCCATCGTACCGCCTCGCCGCACGAG
GAGGAGCGCGAGGTGGCGGCGTCTCCGACGAACGAGCAGGAGCGGAAGAG
GACAGCGACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGTTGCTTTC
GGGCACATCTACCACACACCGTACCTCGCGAAACTTCCGCCTTCTTCGCG
GCAGTCCGTGTTCCAGCTGTTGTTCGCTCTCCGTCGTGCCACCTTTCATG
AAGGTCCTCAAGGAACGTCGGTGGTGGCCCATTGGGAGGACTCCAGCTGC
CTCTTGCTCGTGCTGCTTCGACCAACGACTTGAAGCACGATCTACAAGCC
CCCCGGCAGGCCTCTTCACGCCCTGCACATGGTTCTGGAGAAAACAAGGA
TTTCAGTAGGTCGGCGGCGCCGGTGTCCAAGAGCTGGAAGAACCGTTGGG
GCGACCGAGATTCGACGGCCAAGAGCAGGACGGACGACCACCACCGCTTC
ACCCAGTCTTCGCGAGGGCGCGGCGTCGGAGATAACAGGCGAGGGCGAAC
CGTGGGGAACCAGCCTACGAGGTCTTCGCCGGCGAGTCGCCATCGCCGGA
GCAGGAGTCGGAGCGCAGAGCGACAACAGCGCACCAATCCTTCGTCTAGG
CGCGTGGGCGCAGCCGGAGCGGAGACCGTCGTGGGAGAAACACGCCTCCG
TCTAGGCGTAGCCGTAGCCGGAGCCAGAACCAGAGCGGGGGCAATAGCAG
GGCGACCAGCACTGACAGCAGTCGCGGTGGGAAAGGGCGACGGAGGTCAG
GCCACGGTAACAGGCCAGTGATGTATGATTG

protein sequence of EsuBft839_12a-0001

>EsuBft839_12 ID=EsuBft839_12|Name=EsuBft839_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=277bp
MELLGDNVEILDYEPEGEAPTAEQFPAASAEDQSPPMSMVFTVDDLLDNI
ATADPAELERAYNTGRVSLEDIVGAAHLSSDSTLFVPPFSLPPEGRLILL
PHDEFMAYQRLNEMWCDGLAGKIAEAEAREQAKREDAERLAEREAALAAA
ARKQEEEREAVRAAAAKKQEEEREAALAAAARKQEEERAAVLAEREAYLQ
AARAKQGALRSRLKELEPRHQDPRAAPHPRRRVVVPPPHAITGAPWSPSY
RLAARGGARGGGVSDERAGAEEDSDSX

mRNA from alignment at Scaffold_340:318984..321829+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft839_12a-0001 ID=EsuBft839_12a-0001|Name=EsuBft839_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2846bp|location=Sequence derived from alignment at Scaffold_340:318984..321829+ (Ectocarpus subulatus male Bft15b)
GTGGTCTTGGACAAACAAGCGTGTCAACGACAGAACCTTCATCTATCACT
AGGAGCAAGCCACCGCCCACGGCATCACTCCTTGAAACTTGGCGTCAGCT
GGCATTACACGGTAAGCGGGTGCTGGACGCGGCTTCCACACTGCTGTGTG
TTGTTGCCACGCTTTTTTCACAACCACCGGGTTGCTTGNGTACGTTCGCC
GTCCCTCGAAAGCTTTTTCGTCTGCATCGGCGGTCCATGAAGTGATTTCT
GTGGCGGATACCCTCTGCATGGAGCGTCCTGAGATGCTGGCCTTGTGTAA
TGGGACCCGAGATGACAGCATGCTTCCCACGTCTGCCACCACCTCTACTG
CATTCATACCGGCGTACCGGCCGATGTCCGCGGATTTTCCTGTTGTACTG
TCCAATTTGACTCCGCTTGCATCGACTTGGAACGCGATGTGTGCACACAA
ATTGGGTGCTGGTCGCCCCACCAGCCTTCCCTCCATTTTTCGAAATCACA
TGGCACTTTTTTTCGGGGAATCGTTCACCCTCAAAGCATTTGAATTGAAA
GCCTTTCAACAGCGCAAACCCACAGCAGTCTTTGCTCGCACTTCGGCACC
AGTTGCGGAGGAACGCCGTGCTGCTCTGCGTGACTTTTGGTCGGAAAACC
TCGTGTCTCCATGCAACACGGGCCCTTTTGTGCTAGCTTCTACTGCTGTT
TGTGCGTGGCATGGTGTGCTTTTGGACGCTTTTTCTGCTTGGTTGGATCC
GCTTCAACCTCGTGTGCACCAAGCTTTTATCACTGGGCGTGTGCTATCTT
GTGGATATCTCCGCCTTTCGCATGGACCTCGGCTTGATCTTCCCGAAGTT
GCACCCGGCTTCACTGTTTCTGCTGCTCTTGGTGCTGCTGCCTCAACTGC
GGTTGGTCATCCTACATCTACTGTTTCTGGCCCTGCTGCCCTTTCCAAAA
TCGATCGTAGCTACCCTCTCTCTGGCCCCGTTCTTGTTAACAAAGAGGAT
ACAATGTCCAGCGGCAACATGGAACTCCTGGGCGACAATGTGGAAATCCT
CGACTACGAACCCGAGGGCGAGGCTCCCACCGCAGAGCAGTTCCCAGCGG
CGAGTGCAGAAGACCAGAGCCCCCCCATGTCCATGGTGTTCACCGTCGAT
GATTTGCTGGACAACATCGCCACAGCAGATCCGGCGGAACTGGAGCGGGC
CTACAACACCGGACGAGTATCTCTGGAGGATATCGTAGGAGCGGCCCATC
TGTCGTCCGATTCCACCCTTTTCGTTCCTCCTTTCTCGCTCCCGCCGGAA
GGTAGATTAATCCTCTTGCCCCACGACGAGTTTATGGCGTACCAAAGGTT
GAACGAGATGTGGTGCGACGGTCTTGCCGGGAAGATAGCAGAGGCGGAGG
CGCGAGAGCAGGCGAAGCGCGAGGACGCGGAGCGCTTGGCGGAACGGGAG
GCTGCTCTGGCCGCTGCGGCGAGGAAGCAGGAGGAGGAGCGTGAGGCTGT
TCGGGCTGCTGCGGCGAAGAAGCAGGAGGAGGAACGTGAGGCTGCTCTGG
CTGCTGCGGCGAGGAAGCAGGAGGAGGAGCGTGCGGCTGTTCTGGCGGAG
CGTGAGGCGTATCTCCAAGCGGCTAGGGCGAAGCAGGGGGCGCTCCGATC
GCGGCTGAAGGAGCTGGAGCCCCGCCACCAGGACCCGCGAGCAGCCCCCC
ACCCCCGTCGCCGTGTTGTCGTCCCCCCCCCCCACGCAATCACAGGTGCA
CCTTGGTCCCCATCGTACCGCCTCGCCGCACGAGGAGGAGCGCGAGGTGG
CGGCGTCTCCGACGAACGAGCAGGAGCGGAAGAGGACAGCGACTCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCCGTTGCTTTCGGGCACATCTACCACA
CACCGTACCTCGCGAAACTTCCGCCTTCTTCGCGGCAGTCCGTGTTCCAG
CTGTTGTTCGCTCTCCGTCGTGCCACCTTTCATGAAGGTCCTCAAGGAAC
GTCGGTGGTGGCCCATTGGGAGGACTCCAGCTGCCTCTTGCTCGTGCTGC
TTCGACCAACGACTTGAAGCACGATCTACAAGCCCCCCGGCAGGCCTCTT
CACGCCCTGCACATGGTTCTGGAGAAAACAAGGATTTCAGTAGGTCGGCG
GCGCCGGTGTCCAAGAGCTGGAAGAACCGTTGGGGCGACCGAGATTCGAC
GGCCAAGAGCAGGACGGACGACCACCACCGCTTCACCCAGTCTTCGCGAG
GGCGCGGCGTCGGAGATAACAGGCGAGGGCGAACCGTGGGGAACCAGCCT
ACGAGGTCTTCGCCGGCGAGTCGCCATCGCCGGAGCAGGAGTCGGAGCGC
AGAGCGACAACAGCGCACCAATCCTTCGTCTAGGCGTGCGCGCAGCCGGA
GCGGAGACCGTCGTGGAGAAACACGCCTCCGTCTAGGCGTAGCCGCAGCC
GGAGCCAGAACCAGAGCGGGGGCAATAGCAGGGCGACCAGCNGCAGCGCA
CCGATCCTTCGTCTAGGCGTGGGCGCAGCCGGAGCGGAGACCGTCGTGGG
AGAAACACGCCTCCGTCTAGGCGTAGCCGTAGCCGGAGCCAGAACCAGAG
CGGGGGCAATAGCAGGGCGACCAGCACTGACAGCAGTCGCGGTGGGAAAG
GGCGACGGAGGTCAGGCCACGGTAACAGGCCAGTGATGTATGATTG

Coding sequence (CDS) from alignment at Scaffold_340:318984..321829+

>EsuBft839_12a-0001 ID=EsuBft839_12a-0001|Name=EsuBft839_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=831bp|location=Sequence derived from alignment at Scaffold_340:318984..321829+ (Ectocarpus subulatus male Bft15b)
ATGGAACTCCTGGGCGACAATGTGGAAATCCTCGACTACGAACCCGAGGG
CGAGGCTCCCACCGCAGAGCAGTTCCCAGCGGCGAGTGCAGAAGACCAGA
GCCCCCCCATGTCCATGGTGTTCACCGTCGATGATTTGCTGGACAACATC
GCCACAGCAGATCCGGCGGAACTGGAGCGGGCCTACAACACCGGACGAGT
ATCTCTGGAGGATATCGTAGGAGCGGCCCATCTGTCGTCCGATTCCACCC
TTTTCGTTCCTCCTTTCTCGCTCCCGCCGGAAGGTAGATTAATCCTCTTG
CCCCACGACGAGTTTATGGCGTACCAAAGGTTGAACGAGATGTGGTGCGA
CGGTCTTGCCGGGAAGATAGCAGAGGCGGAGGCGCGAGAGCAGGCGAAGC
GCGAGGACGCGGAGCGCTTGGCGGAACGGGAGGCTGCTCTGGCCGCTGCG
GCGAGGAAGCAGGAGGAGGAGCGTGAGGCTGTTCGGGCTGCTGCGGCGAA
GAAGCAGGAGGAGGAACGTGAGGCTGCTCTGGCTGCTGCGGCGAGGAAGC
AGGAGGAGGAGCGTGCGGCTGTTCTGGCGGAGCGTGAGGCGTATCTCCAA
GCGGCTAGGGCGAAGCAGGGGGCGCTCCGATCGCGGCTGAAGGAGCTGGA
GCCCCGCCACCAGGACCCGCGAGCAGCCCCCCACCCCCGTCGCCGTGTTG
TCGTCCCCCCCCCCCACGCAATCACAGGTGCACCTTGGTCCCCATCGTAC
CGCCTCGCCGCACGAGGAGGAGCGCGAGGTGGCGGCGTCTCCGACGAACG
AGCAGGAGCGGAAGAGGACAGCGACTCNNNN