EsuBft839_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft839_11a-0001
Unique NameEsuBft839_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:314921..317250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog13735.ENSPSIP00000000727
ProteomeIdEsuBft839_11
Protein domainsSSF56672
Protein domainsPTHR19446
Protein domainsIPR005135
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noteprobable rna-directed dna polymerase from transposon x-element os:drosophila melanogaster gn:x- [Automatic annotation]
Nb exon3
Max annot lvl33208|Metazoa
Length1608
Hectar predicted targeting categoryother localisation
Evalue5.94e-36
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3CYKV@33213|Bilateria,487I3@7711|Chordata,4962T@7742|Vertebrata,4CKCN@8459|Testudines
Date last modified2016-06-13
Date creation2016-06-14
KEGG rclassRC00004,RC00039,RC00041
KEGG koko:K04257,ko:K13506
KEGG ReactionR00851,R09380
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04740,map00561,map00564,map01100,map01110,map04740
KEGG ModuleM00089
EC2.3.1.15
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04030
Cross References
External references for this mRNA
DatabaseAccession
GO0006259
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft839_11aEsuBft839_11aEctocarpus subulatus male Bft15bgeneScaffold_340 314921..317250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_11a-0001EsuBft839_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 314943..317074 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_11a-0001-exonEsuBft839_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 314921..315438 -
EsuBft839_11a-0001-exonagat-exon-46625Ectocarpus subulatus male Bft15bexonScaffold_340 315535..316068 -
EsuBft839_11a-0001-exonagat-exon-46624Ectocarpus subulatus male Bft15bexonScaffold_340 316695..317250 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_11a-0001-exonagat-three_prime_utr-22121Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_340 314921..314942 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_11a-0001-cdsEsuBft839_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 314943..315438 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_11a-0001-exonagat-five_prime_utr-14304Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_340 317075..317250 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft839_11a-0001 ID=EsuBft839_11a-0001|Name=EsuBft839_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1608bp|location=Sequence derived from alignment at Scaffold_340:314921..317250- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCTCCCCCCTCGGCCTGCTCCCCGGCCGGGGCCGAAATCGACCTAGTGAG
TCCCTCGCGGGCGAACCAGGCCACAACAGATAGTAGGCGGGTGGTGTCCC
AAGGTGCAACTCACCGCCGCGCTGGCTCAGCGTGGCGGTGAGGATGCACA
GACGGTGGTAGTGGCGAGAGGTGTGTATGGACACTGTTCCCGCGGCAGTA
ATGCGAAGCGGCAAACTGCAACTGGCAACCACCGTCGCGGAAAGCGTGGC
CTACGAAGCTGGAGGATTAGAGAGATTCGTAAACACCACGTTAGTAAGCA
CCGCTCGCGGGAGAAGGGAGACAACCGCGGCCACCGCGGGGAGGGAGTGC
TGCACCCTCCTCGTCAAAACACCACAGGCAAGAACCGAGCTCTGCAGAGA
TGGATTGATGCGAGGAAACTCGCCGCTCGGAAAATACGGAAGAAAGCACA
CCAGCAACGCGAGGTGGACCGAGAGAGACACGAGACCGCAGCGGCCGTCA
AGGCGGCTGCGAAGAAGCAGGCACGAGAGGGCGACCTATGGTTCGGCACG
TTTAACGAGGCGAGACGGGTGCTGCGATGCCAAGATTATGGGCGCGTACG
GACGCGACATTATCAACAACAATTCGGGACGACTCCTTGGACTGGCGTCA
GACAACCAACTCTCCCTGACCAACACCTACTTCCGGACACCGAAAGGTGG
AGTGCAGCACACATTCCAGAGCTCCAACAAGGGAAAGGAGAAGTACCGCC
TCGACTTCATCCTCATGCGTCAGGCGGACCGGCGTTTCGTGCGCAATGTC
TCCGTCAAACGTGTCGACTTCAAAGACTCTGACCACAACCTCGTGCTTAC
GACTGTCCGCCTCCCCCCCCGTGTCGCACCCAACCGACGAGTGCGGGGGA
ACAGCCGAAGCAGCCGGATCCGTGTCGACCTCGAGCGGTTGAAAAAGGAC
AAACACCTACAGGTCGCCTTCCAAAACAGGGCCTCCAGCCGCCCTCCGCC
CACGGCGCTCAGGCGGCCAACGGGAGAGACCGCCGCCGAGCTGACGGCTA
TGGTGATGTCGGCCGCCGCTGAGACCGCGCCGCTGGCGAGGGCGTCCTCC
CAGAGGAGANACGTACCACAGCAGTGGAAGGATGCCACCATCAAAGTGCT
GTTCAAGAAGGGGGACACGATGGAGTGCGGCAACTACCGGGGCATCTCGC
TCGTCGCACACGCCGGCAAGGTGCTGCTTAAGGTCGTCGCTACACGACTG
AGCCACTACTGCGAGCGAGAGGGCATCCTCCCGGAGGAACAGAGCGGTTT
CCGCCCACACCGGTCGACGCTCGACATGCTGTTCGCCATCCAGCGGCTCC
ATGAGCTCGCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGCTTCGTCGAC
CTCACCAAGGCATTCCATTCGGTGGACCGAGACCTACTGCGGGACGTGCC
ACGACGCTTCGGCGTGCCCCCGAAGATGCTGGCGGTCATTCGCCACTTCC
ACGAGGGCATGAGGGCGCGCGTCCGAACGGACGACGGGCAGTACTCGGAA
TGGTTCGACGTGAGCCAAGGCCTCCGACAGGGATGAAACCTGTCCCCGGT
GCTGCTCA
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protein sequence of EsuBft839_11a-0001

>EsuBft839_11 ID=EsuBft839_11|Name=EsuBft839_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=469bp
MDTVPAAVMRSGKLQLATTVAESVAYEAGGLERFVNTTLVSTARGRRETT
AATAGRECCTLLVKTPQARTELCRDGLMRGNSPLGKYGRKHTSNARWTER
DTRPQRPSRRLRRSRHERATYGSARLTRRDGCCDAKIMGAYGRDIINNNS
GRLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQA
DRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNRRVRGNSRSSRIRV
DLERLKKDKHLQVAFQNRASSRPPPTALRRPTGETAAELTAMVMSAAAET
APLARASSQRRXVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGKVL
LKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKST
AVFACFVDLTKAFHSVDRDLLRDVPRRFGVPPKMLAVIRHFHEGMRARVR
TDDGQYSEWFDVSQGLRQG
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mRNA from alignment at Scaffold_340:314921..317250-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft839_11a-0001 ID=EsuBft839_11a-0001|Name=EsuBft839_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2330bp|location=Sequence derived from alignment at Scaffold_340:314921..317250- (Ectocarpus subulatus male Bft15b)
CCTCCCCCCTCGGCCTGCTCCCCGGCCGGGGCCGAAATCGACCTAGTGAG
TCCCTCGCGGGCGAACCAGGCCACAACAGATAGTAGGCGGGTGGTGTCCC
AAGGTGCAACTCACCGCCGCGCTGGCTCAGCGTGGCGGTGAGGATGCACA
GACGGTGGTAGTGGCGAGAGGTGTGTATGGACACTGTTCCCGCGGCAGTA
ATGCGAAGCGGCAAACTGCAACTGGCAACCACCGTCGCGGAAAGCGTGGC
CTACGAAGCTGGAGGATTAGAGAGATTCGTAAACACCACGTTAGTAAGCA
CCGCTCGCGGGAGAAGGGAGACAACCGCGGCCACCGCGGGGAGGGAGTGC
TGCACCCTCCTCGTCAAAACACCACAGGCAAGAACCGAGCTCTGCAGAGA
TGGATTGATGCGAGGAAACTCGCCGCTCGGAAAATACGGAAGAAAGCACA
CCAGCAACGCGAGGTGGACCGAGAGAGACACGAGACCGCAGCGGCCGTCA
AGGCGGCTGCGAAGAAGCAGGCACGAGAGGGCGACCTATGGTTCGGCACG
TTTAACGTACGCACGCTCGCCTACAGCAGTAGGAACCCCATTGGTCACAA
TGTGATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGTGATAG
GACTTCAGGAGACCCGACGAGAGGGGCAAGGTTCAATTGCACACGACGGG
TACGTGATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAGAGGGG
CGTACACGGTGTGGGCATAGCGATCAAGGAGGTCATGTGGGAGAGTGTGG
GCGAGGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCTGATGAAGGTGCGTCTACAAATTG
GCCGCACCTGCGGAGTAACTTTCGTGGTGGGGTACGCCCCAGCGGAAACT
GTCCGCACCACCGCGGACGGCGATGTTAACGCCAAGGATTCCTTCTGGAC
TGCTCTCGACGCAGCGATCCGGGAGGTTCACCGCCGTGACAATCTCGTGG
TGCTAGATGGACGCCAACGCACGCACTGGTAGGAGGCGAGACGGGTGCTG
CGATGCCAAGATTATGGGCGCGTACGGACGCGACATTATCAACAACAATT
CGGGACGACTCCTTGGACTGGCGTCAGACAACCAACTCTCCCTGACCAAC
ACCTACTTCCGGACACCGAAAGGTGGAGTGCAGCACACATTCCAGAGCTC
CAACAAGGGAAAGGAGAAGTACCGCCTCGACTTCATCCTCATGCGTCAGG
CGGACCGGCGTTTCGTGCGCAATGTCTCCGTCAAACGTGTCGACTTCAAA
GACTCTGACCACAACCTCGTGCTTACGACTGTCCGCCTCCCCCCCCGTGT
CGCACCCAACCGACGAGTGCGGGGGAACAGCCGAAGCAGCCGGATCCGTG
TCGACCTCGAGCGGTTGAAAAAGGACAAACACCTACAGGTCGCCTTCCAA
AACAGGGCCTCCAGCCGCCCTCCGCCCACGGCGCTCAGGCGGCCAACGGG
AGAGACCGCCGCCGAGCTGACGGCTATGGTGATGTCGGCCGCCGCTGAGA
CCGCGCCGCTGGCGAGGTTTGCACGAAGGCAGAGAGGCTGGTACACGAGC
GAAGCGCAGCACGAGATCTTAAGGTCGTCGCTACACGACTGAGCCACTAC
TGCGAGCGAGAGGGCGTCCTCCCAGAGGAGANACGTACCACAGCAGTGGA
AGGATGCCACCATCAAAGTGCTGTTCAAGAAGGGGGACACGATGGAGTGC
GGCAACTACCGGGGCATCTCGCTCGTCGCACACGCCGGCAAGGTGCTGCT
TAAGGTCGTCGCTACACGACTGAGCCACTACTGCGAGCGAGAGGGCATCC
TCCCGGAGGAACAGAGCGGTTTCCGCCCACACCGGTCGACGCTCGACATG
CTGTTCGCCATCCAGCGGCTCCATGAGCTCGCGAGGAAGAAGAGTACTGC
GGTGTTCGCGTGCTTCGTCGACCTCACCAAGGCATTCCATTCGGTGGACC
GAGACCTACTGCGGGACGTGCCACGACGCTTCGGCGTGCCCCCGAAGATG
CTGGCGGTCATTCGCCACTTCCACGAGGGCATGAGGGCGCGCGTCCGAAC
GGACGACGGGCAGTACTCGGAATGGTTCGACGTGAGCCAAGGCCTCCGAC
AGGGATGAAACCTGTCCCCGGTGCTGCTCA
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Coding sequence (CDS) from alignment at Scaffold_340:314921..317250-

>EsuBft839_11a-0001 ID=EsuBft839_11a-0001|Name=EsuBft839_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1410bp|location=Sequence derived from alignment at Scaffold_340:314921..317250- (Ectocarpus subulatus male Bft15b)
ATGGACACTGTTCCCGCGGCAGTAATGCGAAGCGGCAAACTGCAACTGGC
AACCACCGTCGCGGAAAGCGTGGCCTACGAAGCTGGAGGATTAGAGAGAT
TCGTAAACACCACGTTAGTAAGCACCGCTCGCGGGAGAAGGGAGACAACC
GCGGCCACCGCGGGGAGGGAGTGCTGCACCCTCCTCGTCAAAACACCACA
GGCAAGAACCGAGCTCTGCAGAGATGGATTGATGCGAGGAAACTCGCCGC
TCGGAAAATACGGAAGAAAGCACACCAGCAACGCGAGGTGGACCGAGAGA
GACACGAGACCGCAGCGGCCGTCAAGGCGGCTGCGAAGAAGCAGGCACGA
GAGGGCGACCTATGGTTCGGCACGTTTAACGAGGCGAGACGGGTGCTGCG
ATGCCAAGATTATGGGCGCGTACGGACGCGACATTATCAACAACAATTCG
GGACGACTCCTTGGACTGGCGTCAGACAACCAACTCTCCCTGACCAACAC
CTACTTCCGGACACCGAAAGGTGGAGTGCAGCACACATTCCAGAGCTCCA
ACAAGGGAAAGGAGAAGTACCGCCTCGACTTCATCCTCATGCGTCAGGCG
GACCGGCGTTTCGTGCGCAATGTCTCCGTCAAACGTGTCGACTTCAAAGA
CTCTGACCACAACCTCGTGCTTACGACTGTCCGCCTCCCCCCCCGTGTCG
CACCCAACCGACGAGTGCGGGGGAACAGCCGAAGCAGCCGGATCCGTGTC
GACCTCGAGCGGTTGAAAAAGGACAAACACCTACAGGTCGCCTTCCAAAA
CAGGGCCTCCAGCCGCCCTCCGCCCACGGCGCTCAGGCGGCCAACGGGAG
AGACCGCCGCCGAGCTGACGGCTATGGTGATGTCGGCCGCCGCTGAGACC
GCGCCGCTGGCGAGGGCGTCCTCCCAGAGGAGANACGTACCACAGCAGTG
GAAGGATGCCACCATCAAAGTGCTGTTCAAGAAGGGGGACACGATGGAGT
GCGGCAACTACCGGGGCATCTCGCTCGTCGCACACGCCGGCAAGGTGCTG
CTTAAGGTCGTCGCTACACGACTGAGCCACTACTGCGAGCGAGAGGGCAT
CCTCCCGGAGGAACAGAGCGGTTTCCGCCCACACCGGTCGACGCTCGACA
TGCTGTTCGCCATCCAGCGGCTCCATGAGCTCGCGAGGAAGAAGAGTACT
GCGGTGTTCGCGTGCTTCGTCGACCTCACCAAGGCATTCCATTCGGTGGA
CCGAGACCTACTGCGGGACGTGCCACGACGCTTCGGCGTGCCCCCGAAGA
TGCTGGCGGTCATTCGCCACTTCCACGAGGGCATGAGGGCGCGCGTCCGA
ACGGACGACGGGCAGTACTCGGAATGGTTCGACGTGAGCCAAGGCCTCCG
ACAGGGATGA
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