EsuBft839_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft839_10a-0001
Unique NameEsuBft839_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:313727..314919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft839_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length69
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft839_10aEsuBft839_10aEctocarpus subulatus male Bft15bgeneScaffold_340 313727..314919 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_10a-0001-exonagat-exon-46622Ectocarpus subulatus male Bft15bexonScaffold_340 313727..314039 -
EsuBft839_10a-0001-exonagat-exon-46623Ectocarpus subulatus male Bft15bexonScaffold_340 314381..314644 -
EsuBft839_10a-0001-exonEsuBft839_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 314803..314919 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_10a-0001-cdsEsuBft839_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 313727..314039 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_10a-0001-exonagat-five_prime_utr-14303Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_340 314898..314919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft839_10a-0001EsuBft839_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 313727..314897 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft839_10a-0001 ID=EsuBft839_10a-0001|Name=EsuBft839_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=694bp|location=Sequence derived from alignment at Scaffold_340:313727..314919- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTTGTTCTTTGCCGCGATGCTCATGGTCGCCGTGGCCGAGTTCGACAAGG
ACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACAAGTGGAGTAC
ACGGGCAAGAAGGGCAGGTCGGCGGGGAAGAAGACGACAGTGGTGACGGA
CGCGGAGGCCCTGTGGGCCATGCTCTACGCGTACAACGCAGCCATCGTCT
CGCGCTCGCCGGAGAGTCTCGAGAAGATGATGTCGGTCATCGTGCGCGTG
GCCGGCCTGTTCGGACTGATGGTGCCGGAGCCAAAGACGGAGGTCATGTG
CATGCTGCCGAAAGGGATCGAGGAACGCCCTTTCACGGTCAGCGCCGCCG
GCCAGGCGTACAAGCAGGCAGATCGGTTTGTGGANGTTATGCGCATGGAG
GACAACCGCCTCCCCAAGCGCATGCTGCTGGGAGCGATGGCGGGGGGTAC
CGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTATCGCCTAGGAGAGG
ACCTCGTGGCGTTTGGCATGAAAGAGGAGAAGGAGGGGGGGAGATGGAAA
GAGAGCGCCAAGGACCAGGAGGCGTGGTACGACAAGATCGAGGACGGGGC
GGCATGGTTCATGAGGAAATGGCACAAGCAGGAGGCGGAAGCGTCCACGA
AGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGAGTACGACCTGN
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protein sequence of EsuBft839_10a-0001

>EsuBft839_10 ID=EsuBft839_10|Name=EsuBft839_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=224bp
MVAVAEFDKDPKVTADMVKIGTQVEYTGKKGRSAGKKTTVVTDAEALWAM
LYAYNAAIVSRSPESLEKMMSVIVRVAGLFGLMVPEPKTEVMCMLPKGIE
ERPFTVSAAGQAYKQADRFVXVMRMEDNRLPKRMLLGAMAGGTGYRGGQE
SDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKW
HKQEAEASTKRQRAREAEAESTTX
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mRNA from alignment at Scaffold_340:313727..314919-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft839_10a-0001 ID=EsuBft839_10a-0001|Name=EsuBft839_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1193bp|location=Sequence derived from alignment at Scaffold_340:313727..314919- (Ectocarpus subulatus male Bft15b)
CTTGTTCTTTGCCGCGATGCTCATGGTCGCCGTGGCCGAGTTCGACAAGG
ACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACAAGTGGAGTAC
ACGGGCAAGAAGGGCAGGTCGGCGGGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAGGTCGGCGGGGAAGAAGACGACAGTG
GTGACGGACGCGGAGGCCCTGTGGGCCATGCTCTACGCGTACAACGCAGC
CATCGTCTCGCGCTCGCCGGAGAGTCTCGAGAAGATGATGTCGGTCATCG
TGCGCGTGGCCGGCCTGTTCGGACTGATGGTGCCGGAGCCAAAGACGGAG
GTCATGTGCATGCTGCCGAAAGGGATCGAGGAACGCCCTTTCACGGTCAG
CGCCGCCGGCCAGGCGTACAAGCAGGCAGATCGGTTTGTGTANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGGATA
CCGGGGCGGGCAGGAGAGCGACTGGGTGTCTCGTCTAGGAGAGGACCTCG
TGGCCTTCAACATGGGAGACGAAAGGGGAGGGANGTTATGCGCATGGAGG
ACAACCGCCTCCCCAAGCGCATGCTGCTGGGAGCGATGGCGGGGGGTACC
GGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTATCGCCTAGGAGAGGA
CCTCGTGGCGTTTGGCATGAAAGAGGAGAAGGAGGGGGGGAGATGGAAAG
AGAGCGCCAAGGACCAGGAGGCGTGGTACGACAAGATCGAGGACGGGGCG
GCATGGTTCATGAGGAAATGGCACAAGCAGGAGGCGGAAGCGTCCACGAA
GCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGAGTACGACCTGN
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Coding sequence (CDS) from alignment at Scaffold_340:313727..314919-

>EsuBft839_10a-0001 ID=EsuBft839_10a-0001|Name=EsuBft839_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=672bp|location=Sequence derived from alignment at Scaffold_340:313727..314919- (Ectocarpus subulatus male Bft15b)
ATGGTCGCCGTGGCCGAGTTCGACAAGGACCCCAAGGTGACGGCGGACAT
GGTCAAGATCGGGACACAAGTGGAGTACACGGGCAAGAAGGGCAGGTCGG
CGGGGAAGAAGACGACAGTGGTGACGGACGCGGAGGCCCTGTGGGCCATG
CTCTACGCGTACAACGCAGCCATCGTCTCGCGCTCGCCGGAGAGTCTCGA
GAAGATGATGTCGGTCATCGTGCGCGTGGCCGGCCTGTTCGGACTGATGG
TGCCGGAGCCAAAGACGGAGGTCATGTGCATGCTGCCGAAAGGGATCGAG
GAACGCCCTTTCACGGTCAGCGCCGCCGGCCAGGCGTACAAGCAGGCAGA
TCGGTTTGTGGANGTTATGCGCATGGAGGACAACCGCCTCCCCAAGCGCA
TGCTGCTGGGAGCGATGGCGGGGGGTACCGGATACCGGGGCGGGCAGGAG
AGCGACTGGGTGTATCGCCTAGGAGAGGACCTCGTGGCGTTTGGCATGAA
AGAGGAGAAGGAGGGGGGGAGATGGAAAGAGAGCGCCAAGGACCAGGAGG
CGTGGTACGACAAGATCGAGGACGGGGCGGCATGGTTCATGAGGAAATGG
CACAAGCAGGAGGCGGAAGCGTCCACGAAGCGCCAGCGCGCGAGGGAAGC
AGAAGCAGAGAGTACGACCTGN
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