EsuBft832_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft832_11a-0001
Unique Name	EsuBft832_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_389	contig	Scaffold_389:782105..785024 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FXD3
ProteomeId	EsuBft832_11
Protein domains	IPR004875
Protein domains	PTHR19303
Owner	apollo_admin@sb-roscoff.fr
Note	pogo transposable element with krab domain os:mus musculus gn:pogk pe:2 sv:2 [Automatic annotation]
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	2183
Hectar predicted targeting category	other localisation
Evalue	1.06e-137
EggNOG OGs	KOG3105@1\|root,KOG3105@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Preferred name	POGK
KEGG ko	ko:K09228
Description	DNA binding
COG category	CH
BRITE	ko00000,ko03000

Cross References

External references for this mRNA


Database	Accession
GO	0003676

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft832_11a	EsuBft832_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_389 782105..785024 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft832_11a-0001-exon	agat-exon-45538	Ectocarpus subulatus male Bft15b	exon	Scaffold_389 782105..783548 -
EsuBft832_11a-0001-exon	EsuBft832_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_389 784286..785024 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft832_11a-0001-exon	agat-three_prime_utr-22053	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_389 782105..782583 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft832_11a-0001-cds	EsuBft832_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_389 782584..783548 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft832_11a-0001	EsuBft832_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_389 782584..785024 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_389:782105..785024-
coding sequence from alignment at Scaffold_389:782105..785024-

spliced messenger RNA

>EsuBft832_11a-0001 ID=EsuBft832_11a-0001|Name=EsuBft832_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2183bp|location=Sequence derived from alignment at Scaffold_389:782105..785024- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGTTCAAACTGAACGCGGCGGCCTACACACGGGAGATCTGCCCGTG
CCACGGTCAACCGGTGGGCAACAACGGCGCGGCGAAAGTTCTCCAGGTAC
CTCGGAAGCGTATCATCGAGTGGCTGAAGCAGGAGGAGCAGCTCATGGAG
AAGGTCAGCGCCAACCCCAAGCTTTCGAAGGCCAAGCAGGTTCACAGCGG
AGGGAAAGCTTCGACAGTCGACGCCGAACAAGCCCTTGTGGACTACATCA
AGGAGCAGCGCAAGCAGCACCGCGGTTGTGGTAATCGGGAGGTGATGAAC
AAGCTGCTCGAGCCGAAGCCTAACGCCCTTGGCGGGATGCCGGCGAACGC
AAAACCGGAGGAGGCGCTGGCTTTCAAGGTCAAATTTAACTCCTGGTACC
AACGGTTCTGCAAGCGGAATGGGTTCAGTATCCGCCGGCGTACCAGCGTG
GGCCAGAAACTGCCGAAGGGGTACGAGGGTATGGCGTGGGCGACGGTGAT
GAAGCTGCGCGAGGCTCTCGTAAAGCGCGCCGGTGAGATCTACGCTCGGC
GCCACCCGCCGGCACCTGGCGAGAGCCCCATCAAAGGGGAGGATCTGACT
TCCGAGCAGCTGGCGACTGTGGAGGCGGAGGTTTTTGAGGAACTTGGCAA
CATGGACCAGACGCTAGTCCAGCACGAGATGCCGGTGGAGACCACTCTGG
AGAAGACCGGTGCTAAGGATGCTCGCATCAGCACAGGAGGCAAAGAGAAG
GAACGCTTCACGCTCGTTCTGGCTGTCATGGCGGACGGCAAAAAGGTTTC
GCCGCGCATCATCTTCAAGGGCACGCCGTTCATCCCCCCGACCGTGAGCG
GCAAGGGCAAGAGCACCCTGCCGCGGAAGAACTCCGTCGCGTGGGAGATC
CATCCTGCGAACCGCGCCAAGCACGGCCACCCTGCCAACGGCATGTCCTT
CGGCGTGCAGGAAAAGAGCTGGAGTGACCAGCGGGAGTGCAACGGGTGGA
TCTCGGGCAGCTGGAAGCTCCGTCCCAACAACGGCAGCATCGTCCAGCAG
CGCCCGTGCATCCTGGTGCTGGACGACTTCAAGTGCCACAAGGACGAGGG
TTTCATCGCCGCCCTCAAGAGAGACGCCAACGCCATCGTCATCTTCATCC
CAGGCGTGTTGACGCCCTTGCTCCAACCGCTCGACCGCATGCTCAACAAG
CAGATGAAGCGGCTGCTGCGGGGCAAATACACCGCCTACAGCGCGTCGGC
GGTCGCAGACGCCCGGTCGGGGAAGCTGAAGCCACCGGAGCGTGGGGTCG
TCTCTACGTGGTGCAAGGAAGCGTGGGAGTCCATCACCTCCGAGACGGTG
AAGACTTGCTTCAAAATCTGCGGTCTCACGCTCGCGCTCGACGGCAGCGA
AGACCACGCCAGGTGCGAGCACAACTTCGGGGAAGACTACCGTGACCTTC
TCGAGGAGCAGCACGCCGTGTGGTTCGCTGAGCACCCCGACGTGACTCTC
CCGCCGCTCAAGCTGCCGAAGGTACCAGGGGGGTTCCACTCCAACCCCAT
CACGGCTGCTCAGAAGGAGGTCGAGGGGAAGCTGCTGCCCTACGTCGCTG
ATGAGAGCGACAGCGAGGTGGAGGTCTTGGAGGGCGACAGCGACGTGGAA
GTCGTGGAGGGGCAGGGGGGCGGGGGCGCCGAAGGAGAAGTAGTTGAACT
TTGAATCATAGTGATTTGGGATTGCCAGTGAGATTGGATTTTTTTGCGAT
GGTAGGGGCGCGGGCACGAAGTAGAGTTCAACCCGCCTAGGAAGTAAAGT
AGTAGGACGTTGGTTGCTCGTAGTGGTAGTTTGGTGTGATTTTATACTTC
GTTTTCGGTTCATCTGCGTTTAGAATTGTTGAGTGGATGCCGTTTGCCGA
TTTGTCGATCTTGATTCTTCAGAACAAAAAGAAGAGAACAAAGAGTACAA
CTACCACATTTTTTAGCATCGTCATGGTGCCAAGGGCAGCAGTAGCAGTG
AAGCACGCGTTTCAAGCTCCCACAGTATCCGGAATTTCCAGCAAAAGATG
CTGGTGAAAGGGTATAACTTACCGCCAAACCTCACCGCACATATCGGCGT
CTCCGCACACGGAAGATACCTGTGCGATAGTCTAGCACATCATTCGGAAC
CCTCTTTTTTTCCGCACACCCTGTGCCAAGACC

protein sequence of EsuBft832_11a-0001

>EsuBft832_11 ID=EsuBft832_11|Name=EsuBft832_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=567bp
MWFKLNAAAYTREICPCHGQPVGNNGAAKVLQVPRKRIIEWLKQEEQLME
KVSANPKLSKAKQVHSGGKASTVDAEQALVDYIKEQRKQHRGCGNREVMN
KLLEPKPNALGGMPANAKPEEALAFKVKFNSWYQRFCKRNGFSIRRRTSV
GQKLPKGYEGMAWATVMKLREALVKRAGEIYARRHPPAPGESPIKGEDLT
SEQLATVEAEVFEELGNMDQTLVQHEMPVETTLEKTGAKDARISTGGKEK
ERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEI
HPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQ
RPCILVLDDFKCHKDEGFIAALKRDANAIVIFIPGVLTPLLQPLDRMLNK
QMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESITSETV
KTCFKICGLTLALDGSEDHARCEHNFGEDYRDLLEEQHAVWFAEHPDVTL
PPLKLPKVPGGFHSNPITAAQKEVEGKLLPYVADESDSEVEVLEGDSDVE
VVEGQGGGGAEGEVVEL

mRNA from alignment at Scaffold_389:782105..785024-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft832_11a-0001 ID=EsuBft832_11a-0001|Name=EsuBft832_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2920bp|location=Sequence derived from alignment at Scaffold_389:782105..785024- (Ectocarpus subulatus male Bft15b)
ATGTGGTTCAAACTGAACGCGGCGGCCTACACACGGGAGATCTGCCCGTG
CCACGGTCAACCGGTGGGCAACAACGGCGCGGCGAAAGTTCTCCAGGTAC
CTCGGAAGCGTATCATCGAGTGGCTGAAGCAGGAGGAGCAGCTCATGGAG
AAGGTCAGCGCCAACCCCAAGCTTTCGAAGGCCAAGCAGGTTCACAGCGG
AGGGAAAGCTTCGACAGTCGACGCCGAACAAGCCCTTGTGGACTACATCA
AGGAGCAGCGCAAGCAGCACCGCGGTTGTGGTAATCGGGAGGTGATGAAC
AAGCTGCTCGAGCCGAAGCCTAACGCCCTTGGCGGGATGCCGGCGAACGC
AAAACCGGAGGAGGCGCTGGCTTTCAAGGTCAAATTTAACTCCTGGTACC
AACGGTTCTGCAAGCGGAATGGGTTCAGTATCCGCCGGCGTACCAGCGTG
GGCCAGAAACTGCCGAAGGGGTACGAGGGTATGGCGTGGGCGACGGTGAT
GAAGCTGCGCGAGGCTCTCGTAAAGCGCGCCGGTGAGATCTACGCTCGGC
GCCACCCGCCGGCACCTGGCGAGAGCCCCATCAAAGGGGAGGATCTGACT
TCCGAGCAGCTGGCGACTGTGGAGGCGGAGGTTTTTGAGGAACTTGGCAA
CATGGACCAGACGCTAGTCCAGCACGAGATGCCGGTGGAGACCACTCTGG
AGAAGACCGGTGCTAAGGATGCTCGCATCAGCACAGGAGGTGAGGGCGAG
CTAATATTTTTGTCAAAATTTTGTGTGGTGTGCGGATTTTTTGTCGTTGG
ACAATTTGTTAAGACACATAATTATTTTTTTGCGTGCCGGTACACTGTAC
GATGTAGCTCTATCGGTAGACACAGGAGGGTTGCTACCTTTTTCTGCGGG
ATTATTCTACACTTCCTTTTTCATTGCATCCAAACTATCAACCAACTTAG
TTTTCGAAACGTCTGGAACCGTTTGCATCCATTGCATCAACCACACACCG
CTGTCCTCGCAGAAATATTCAACACTCTACTCCCCCCCCGCCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACGCTTCAC
GCTCGTTCTGGCTGTCATGGCGGACGGCAAAAAGGTTTCGCCGCGCATGA
TCTTCAAGGGCACGCCGTTCATCCCCCCGACTGTGAGCGGCAAGGGCAAG
AGCACGCTGCCGCGGAAGAACTCTGTCGCGTGGGAGATCCATCCTGCGAA
CCGCGCCAAGCACGGCCACCCTGCCAACGGTATGTCCTTCGGCGTGCAGG
AGAAGAGATGGAGAGACCAGCGGGAGTGCAACGGGTGAATCTCGGGCAGC
TGGAAGCTCCGTCCCAACAACGGCAGCATCGTCCAGCANGCCTCCCCTCG
CGTTGATTTTTTCCCCCTCCGCTCAGGCAAAGAGAAGGAACGCTTCACGC
TCGTTCTGGCTGTCATGGCGGACGGCAAAAAGGTTTCGCCGCGCATCATC
TTCAAGGGCACGCCGTTCATCCCCCCGACCGTGAGCGGCAAGGGCAAGAG
CACCCTGCCGCGGAAGAACTCCGTCGCGTGGGAGATCCATCCTGCGAACC
GCGCCAAGCACGGCCACCCTGCCAACGGCATGTCCTTCGGCGTGCAGGAA
AAGAGCTGGAGTGACCAGCGGGAGTGCAACGGGTGGATCTCGGGCAGCTG
GAAGCTCCGTCCCAACAACGGCAGCATCGTCCAGCAGCGCCCGTGCATCC
TGGTGCTGGACGACTTCAAGTGCCACAAGGACGAGGGTTTCATCGCCGCC
CTCAAGAGAGACGCCAACGCCATCGTCATCTTCATCCCAGGCGTGTTGAC
GCCCTTGCTCCAACCGCTCGACCGCATGCTCAACAAGCAGATGAAGCGGC
TGCTGCGGGGCAAATACACCGCCTACAGCGCGTCGGCGGTCGCAGACGCC
CGGTCGGGGAAGCTGAAGCCACCGGAGCGTGGGGTCGTCTCTACGTGGTG
CAAGGAAGCGTGGGAGTCCATCACCTCCGAGACGGTGAAGACTTGCTTCA
AAATCTGCGGTCTCACGCTCGCGCTCGACGGCAGCGAAGACCACGCCAGG
TGCGAGCACAACTTCGGGGAAGACTACCGTGACCTTCTCGAGGAGCAGCA
CGCCGTGTGGTTCGCTGAGCACCCCGACGTGACTCTCCCGCCGCTCAAGC
TGCCGAAGGTACCAGGGGGGTTCCACTCCAACCCCATCACGGCTGCTCAG
AAGGAGGTCGAGGGGAAGCTGCTGCCCTACGTCGCTGATGAGAGCGACAG
CGAGGTGGAGGTCTTGGAGGGCGACAGCGACGTGGAAGTCGTGGAGGGGC
AGGGGGGCGGGGGCGCCGAAGGAGAAGTAGTTGAACTTTGAATCATAGTG
ATTTGGGATTGCCAGTGAGATTGGATTTTTTTGCGATGGTAGGGGCGCGG
GCACGAAGTAGAGTTCAACCCGCCTAGGAAGTAAAGTAGTAGGACGTTGG
TTGCTCGTAGTGGTAGTTTGGTGTGATTTTATACTTCGTTTTCGGTTCAT
CTGCGTTTAGAATTGTTGAGTGGATGCCGTTTGCCGATTTGTCGATCTTG
ATTCTTCAGAACAAAAAGAAGAGAACAAAGAGTACAACTACCACATTTTT
TAGCATCGTCATGGTGCCAAGGGCAGCAGTAGCAGTGAAGCACGCGTTTC
AAGCTCCCACAGTATCCGGAATTTCCAGCAAAAGATGCTGGTGAAAGGGT
ATAACTTACCGCCAAACCTCACCGCACATATCGGCGTCTCCGCACACGGA
AGATACCTGTGCGATAGTCTAGCACATCATTCGGAACCCTCTTTTTTTCC
GCACACCCTGTGCCAAGACC

Coding sequence (CDS) from alignment at Scaffold_389:782105..785024-

>EsuBft832_11a-0001 ID=EsuBft832_11a-0001|Name=EsuBft832_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1704bp|location=Sequence derived from alignment at Scaffold_389:782105..785024- (Ectocarpus subulatus male Bft15b)
ATGTGGTTCAAACTGAACGCGGCGGCCTACACACGGGAGATCTGCCCGTG
CCACGGTCAACCGGTGGGCAACAACGGCGCGGCGAAAGTTCTCCAGGTAC
CTCGGAAGCGTATCATCGAGTGGCTGAAGCAGGAGGAGCAGCTCATGGAG
AAGGTCAGCGCCAACCCCAAGCTTTCGAAGGCCAAGCAGGTTCACAGCGG
AGGGAAAGCTTCGACAGTCGACGCCGAACAAGCCCTTGTGGACTACATCA
AGGAGCAGCGCAAGCAGCACCGCGGTTGTGGTAATCGGGAGGTGATGAAC
AAGCTGCTCGAGCCGAAGCCTAACGCCCTTGGCGGGATGCCGGCGAACGC
AAAACCGGAGGAGGCGCTGGCTTTCAAGGTCAAATTTAACTCCTGGTACC
AACGGTTCTGCAAGCGGAATGGGTTCAGTATCCGCCGGCGTACCAGCGTG
GGCCAGAAACTGCCGAAGGGGTACGAGGGTATGGCGTGGGCGACGGTGAT
GAAGCTGCGCGAGGCTCTCGTAAAGCGCGCCGGTGAGATCTACGCTCGGC
GCCACCCGCCGGCACCTGGCGAGAGCCCCATCAAAGGGGAGGATCTGACT
TCCGAGCAGCTGGCGACTGTGGAGGCGGAGGTTTTTGAGGAACTTGGCAA
CATGGACCAGACGCTAGTCCAGCACGAGATGCCGGTGGAGACCACTCTGG
AGAAGACCGGTGCTAAGGATGCTCGCATCAGCACAGGAGGCAAAGAGAAG
GAACGCTTCACGCTCGTTCTGGCTGTCATGGCGGACGGCAAAAAGGTTTC
GCCGCGCATCATCTTCAAGGGCACGCCGTTCATCCCCCCGACCGTGAGCG
GCAAGGGCAAGAGCACCCTGCCGCGGAAGAACTCCGTCGCGTGGGAGATC
CATCCTGCGAACCGCGCCAAGCACGGCCACCCTGCCAACGGCATGTCCTT
CGGCGTGCAGGAAAAGAGCTGGAGTGACCAGCGGGAGTGCAACGGGTGGA
TCTCGGGCAGCTGGAAGCTCCGTCCCAACAACGGCAGCATCGTCCAGCAG
CGCCCGTGCATCCTGGTGCTGGACGACTTCAAGTGCCACAAGGACGAGGG
TTTCATCGCCGCCCTCAAGAGAGACGCCAACGCCATCGTCATCTTCATCC
CAGGCGTGTTGACGCCCTTGCTCCAACCGCTCGACCGCATGCTCAACAAG
CAGATGAAGCGGCTGCTGCGGGGCAAATACACCGCCTACAGCGCGTCGGC
GGTCGCAGACGCCCGGTCGGGGAAGCTGAAGCCACCGGAGCGTGGGGTCG
TCTCTACGTGGTGCAAGGAAGCGTGGGAGTCCATCACCTCCGAGACGGTG
AAGACTTGCTTCAAAATCTGCGGTCTCACGCTCGCGCTCGACGGCAGCGA
AGACCACGCCAGGTGCGAGCACAACTTCGGGGAAGACTACCGTGACCTTC
TCGAGGAGCAGCACGCCGTGTGGTTCGCTGAGCACCCCGACGTGACTCTC
CCGCCGCTCAAGCTGCCGAAGGTACCAGGGGGGTTCCACTCCAACCCCAT
CACGGCTGCTCAGAAGGAGGTCGAGGGGAAGCTGCTGCCCTACGTCGCTG
ATGAGAGCGACAGCGAGGTGGAGGTCTTGGAGGGCGACAGCGACGTGGAA
GTCGTGGAGGGGCAGGGGGGCGGGGGCGCCGAAGGAGAAGTAGTTGAACT
TTGA