Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 67593.Physo133508 |
| ProteomeId | EsuBft820_3 |
| Protein domains | IPR013103 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 4776|Peronosporales |
| Length | 1063 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.08e-10 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,3QHHC@4776|Peronosporales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | gag-polypeptide of LTR copia-type |
| COG category | L |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft820_3a-0001 ID=EsuBft820_3a-0001|Name=EsuBft820_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1063bp|location=Sequence derived from alignment at Scaffold_347:75852..77700+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGCCAGGGCGAAGAAGTAGGACATGCTGGGATACAATACAACCAGCAAGT
CGTGGCGGCTATGGGACCCGGCGGAACCACTCAAAATTACAAACTCTGCT
GAAGTGTCATTCCGCGAGGTAGATGCCCGCGACGTCGCTCGCCCCGTGCA
CGGGTCTGGCCCATGTCCCGAACAAGGCCAGATTTTCCAGCCCGGCATTA
TCACTGGGGCCGAGACAAGAGACGAGGAACCAGAACCGGCAGAACCGAAC
GACGGACCGGACGAAGAACCGCCCGTGGTGCGCAAAAGCGGTCGAACGAC
AAAGCCGCGGGACCGTCTGAACCTGTTTACGACGGAGCAGGTGTTCGAAA
CAGAATACGCACTGGTGATCGGAGTGCAAGGATTTCACGAAGCTGAGACC
GGAACCGACAATGCTGCACCGGTAGCGTCTCTCCAAGCCGTCCATCTGAT
AGTTGCGCATGCTGCCAAGAATGGACTTGTTCTTCGCCAAGCCGACATCA
GGACGGCGTTCCTCCACGCGAGGATGGAACCGGGATCGAAACCAGTGTTC
CTGCTCGGTATGGAAATCAACCGAGACAGAGCCGCAGGGACAATTCTTTT
TGAACAGGAAGCGTATACCAACGCAGTGTTGGACAAGTTCGGCATGGCCG
ACGCGCGTCCGACGACATCTCCGTCTGAGGTTGGACTGGTGTCCGTCGTG
GAGGACGAGGTGATGTCAGCGGAAGATACCACATATTTCCGCTCCGCCAC
AGGCTCGCTTTTATATCTCAGCAGAAACTCAAACGTGTACTCAGAGTTCG
TGGCTTTGTCGAAGGGGTACAACATCATCAAGTACTTCCGCCACCTGCTG
GACACCATAAATCAGATTCAGGAAGAAGCAACCGTGGTGTGGGAGGACAA
CTCGAGAGCTCTAAAATTAACTCGCAGCTTCCGTATCACCCCAAGGACTA
CGCACATTGACGTAAAGTTTCACCACGTAAGGTCTCTGGTAGCTGATGAA
GTCGTAGACGTGAAGCAAATATCGACGTCGCTTCAGAAAGCGGATACTTT
ACGAAAGGGCTAA back to topprotein sequence of EsuBft820_3a-0001 >EsuBft820_3 ID=EsuBft820_3|Name=EsuBft820_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=346bp
MLGYNTTSKSWRLWDPAEPLKITNSAEVSFREVDARDVARPVHGSGPCPE
QGQIFQPGIITGAETRDEEPEPAEPNDGPDEEPPVVRKSGRTTKPRDRLN
LFTTEQVFETEYALVIGVQGFHEAETGTDNAAPVASLQAVHLIVAHAAKN
GLVLRQADIRTAFLHARMEPGSKPVFLLGMEINRDRAAGTILFEQEAYTN
AVLDKFGMADARPTTSPSEVGLVSVVEDEVMSAEDTTYFRSATGSLLYLS
RNSNVYSEFVALSKGYNIIKYFRHLLDTINQIQEEATVVWEDNSRALKLT
RSFRITPRTTHIDVKFHHVRSLVADEVVDVKQISTSLQKADTLRKG back to topmRNA from alignment at Scaffold_347:75852..77700+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft820_3a-0001 ID=EsuBft820_3a-0001|Name=EsuBft820_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1849bp|location=Sequence derived from alignment at Scaffold_347:75852..77700+ (Ectocarpus subulatus male Bft15b)
TGCCAGGGCGAAGAAGTAGGACATGCTGGGATACAATACAACCAGCAAGT
CGTGGCGGCTATGGGACCCGGCGGAACCACTCAAAATTACAAACTCTGCT
GAAGTGTCATTCCGCGAGGTAGATGCCCGCGACGTCGCTCGCCCCGTGCA
CGGGTCTGGCCCATGTCCCGAACAAGGCCAGATTTTCCAGCCCGGCATTA
TCACTGGGGCCGAGACAAGAGACGAGGAACCAGAACCGGCAGAACCGAAC
GACGGACCGGACGAAGAACCGCCCGTGGTGCGCAAAAGCGGTCGAACGAC
AAAGCCGCGGGACCGTCTGAACCTGTTTACGACGGAGCAGGTGTTCGAAA
CAGAATACGCACTGGTGATCGGAGGTGAGATCGGGAACCTTGGTCAAGGG
ATACCTGGCCAACTAGGATACATGCCCGCCGATCCACCGAACTACCGCGC
AGCGGTCAACGGACCAGATGCCGTTGGATGGATGAAAAGCATTGAGGAGG
AGTATCGCTCCTTACTAGACCACGACGTTTATGAGTGGGTCGATTCCCCG
TGAGATGCTCAAATCATCCCGTCAAAATACATCTACAAATGGAAGTACAA
CGAGGCCGGCATCGCTGTGCGACATAAATCGAGAATCGTAGTGCAAGGAT
TTCACGAAGCTGAGACCGGAACCGACAATGCTGCACCGGTAGCGTCTCTC
CAAGCCGTCCATCTGATAGTTGCGCATGCTGCCAAGAATGGACTTGTTCT
TCGCCAAGCCGACATCAGGACGGCGTTCCTCCACGCGAGGATGGAACCGG
GATCGAAACCAGTGTACGTCATTCCCCCGGAAGGATTCTCGTGCGACAGC
GAGAGAGCCAGGCATCTGGAAGCTCAGAGCGTGGCTTTACGGGTTGCGTT
TTTTCCCAAAAGGCTGGTGGGGCACTCTGCACGATTTTCTCCTGAAGATC
GGATTTGTTGAGAGCACCGCTGAACAGGGCATGTACATCCTGGACGACGG
AGATGTGCTCCTTCTCGTTTATGTGGATGACATTCTGCTGACCGGGGAGG
ACGAGAACAAAGTGCTGAGCATAGTAGATTAGCTGAATGGGCGTTTCGAA
ACGATGGACCTGGGAGGAGCCAGGTTCCTGCTCGGTATGGAAATCAACCG
AGACAGAGCCGCAGGGACAATTCTTTTTGAACAGGAAGCGTATACCAACG
CAGTGTTGGACAAGTTCGGCATGGCCGACGCGCGTCCGACGACATCTCCG
TCTGAGGTTGGACTGGTGTCCGTCGTGGAGGACGAGGTGATGTCAGCGGA
AGATACCACATATTTCCGCTCCGCCACAGGCTCGCTTTTATATCTCAGCA
GAAACTCAAACGTGTACTCAGGTACCTGAAAGGGACGATATCAATCGGTG
TACGCTACGGCGAGGATGCCGAACATGGAAACGTCATTACGGCATTTGTC
GACTCAGATTTTGCAGGCGACCTAGACAACGGCTACCCCACCACGGGAGT
CGTCCTGTACTTCGCTGGTGGACCGGTGTAATGGACATCATCCAAGCAAA
CGGTGGTGGCGACCTCTTCCGTTGAAGCAGAGTTCGTGGCTTTGTCGAAG
GGGTACAACATCATCAAGTACTTCCGCCACCTGCTGGACACCATAAATCA
GATTCAGGAAGAAGCAACCGTGGTGTGGGAGGACAACTCGAGAGCTCTAA
AATTAACTCGCAGCTTCCGTATCACCCCAAGGACTACGCACATTGACGTA
AAGTTTCACCACGTAAGGTCTCTGGTAGCTGATGAAGTCGTAGACGTGAA
GCAAATATCGACGTCGCTTCAGAAAGCGGATACTTTACGAAAGGGCTAA back to topCoding sequence (CDS) from alignment at Scaffold_347:75852..77700+ >EsuBft820_3a-0001 ID=EsuBft820_3a-0001|Name=EsuBft820_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1041bp|location=Sequence derived from alignment at Scaffold_347:75852..77700+ (Ectocarpus subulatus male Bft15b)
ATGCTGGGATACAATACAACCAGCAAGTCGTGGCGGCTATGGGACCCGGC
GGAACCACTCAAAATTACAAACTCTGCTGAAGTGTCATTCCGCGAGGTAG
ATGCCCGCGACGTCGCTCGCCCCGTGCACGGGTCTGGCCCATGTCCCGAA
CAAGGCCAGATTTTCCAGCCCGGCATTATCACTGGGGCCGAGACAAGAGA
CGAGGAACCAGAACCGGCAGAACCGAACGACGGACCGGACGAAGAACCGC
CCGTGGTGCGCAAAAGCGGTCGAACGACAAAGCCGCGGGACCGTCTGAAC
CTGTTTACGACGGAGCAGGTGTTCGAAACAGAATACGCACTGGTGATCGG
AGTGCAAGGATTTCACGAAGCTGAGACCGGAACCGACAATGCTGCACCGG
TAGCGTCTCTCCAAGCCGTCCATCTGATAGTTGCGCATGCTGCCAAGAAT
GGACTTGTTCTTCGCCAAGCCGACATCAGGACGGCGTTCCTCCACGCGAG
GATGGAACCGGGATCGAAACCAGTGTTCCTGCTCGGTATGGAAATCAACC
GAGACAGAGCCGCAGGGACAATTCTTTTTGAACAGGAAGCGTATACCAAC
GCAGTGTTGGACAAGTTCGGCATGGCCGACGCGCGTCCGACGACATCTCC
GTCTGAGGTTGGACTGGTGTCCGTCGTGGAGGACGAGGTGATGTCAGCGG
AAGATACCACATATTTCCGCTCCGCCACAGGCTCGCTTTTATATCTCAGC
AGAAACTCAAACGTGTACTCAGAGTTCGTGGCTTTGTCGAAGGGGTACAA
CATCATCAAGTACTTCCGCCACCTGCTGGACACCATAAATCAGATTCAGG
AAGAAGCAACCGTGGTGTGGGAGGACAACTCGAGAGCTCTAAAATTAACT
CGCAGCTTCCGTATCACCCCAAGGACTACGCACATTGACGTAAAGTTTCA
CCACGTAAGGTCTCTGGTAGCTGATGAAGTCGTAGACGTGAAGCAAATAT
CGACGTCGCTTCAGAAAGCGGATACTTTACGAAAGGGCTAA back to top
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