EsuBft820_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft820_3a-0001
Unique NameEsuBft820_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_347contigScaffold_347:75852..77700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog67593.Physo133508
ProteomeIdEsuBft820_3
Protein domainsIPR013103
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl4776|Peronosporales
Length1063
Hectar predicted targeting categoryother localisation
Evalue1.08e-10
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHHC@4776|Peronosporales
Date last modified2016-06-14
Date creation2016-06-14
Descriptiongag-polypeptide of LTR copia-type
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft820_3aEsuBft820_3aEctocarpus subulatus male Bft15bgeneScaffold_347 75852..77700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft820_3a-0001EsuBft820_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_347 75874..77700 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft820_3a-0001-exonagat-exon-60461Ectocarpus subulatus male Bft15bexonScaffold_347 75852..76225 +
EsuBft820_3a-0001-exonagat-exon-60460Ectocarpus subulatus male Bft15bexonScaffold_347 76493..76664 +
EsuBft820_3a-0001-exonagat-exon-60459Ectocarpus subulatus male Bft15bexonScaffold_347 76975..77222 +
EsuBft820_3a-0001-exonEsuBft820_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_347 77432..77700 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft820_3a-0001-exonagat-five_prime_utr-14155Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_347 75852..75873 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft820_3a-0001-cdsEsuBft820_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_347 75874..76225 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft820_3a-0001 ID=EsuBft820_3a-0001|Name=EsuBft820_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1063bp|location=Sequence derived from alignment at Scaffold_347:75852..77700+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCCAGGGCGAAGAAGTAGGACATGCTGGGATACAATACAACCAGCAAGT
CGTGGCGGCTATGGGACCCGGCGGAACCACTCAAAATTACAAACTCTGCT
GAAGTGTCATTCCGCGAGGTAGATGCCCGCGACGTCGCTCGCCCCGTGCA
CGGGTCTGGCCCATGTCCCGAACAAGGCCAGATTTTCCAGCCCGGCATTA
TCACTGGGGCCGAGACAAGAGACGAGGAACCAGAACCGGCAGAACCGAAC
GACGGACCGGACGAAGAACCGCCCGTGGTGCGCAAAAGCGGTCGAACGAC
AAAGCCGCGGGACCGTCTGAACCTGTTTACGACGGAGCAGGTGTTCGAAA
CAGAATACGCACTGGTGATCGGAGTGCAAGGATTTCACGAAGCTGAGACC
GGAACCGACAATGCTGCACCGGTAGCGTCTCTCCAAGCCGTCCATCTGAT
AGTTGCGCATGCTGCCAAGAATGGACTTGTTCTTCGCCAAGCCGACATCA
GGACGGCGTTCCTCCACGCGAGGATGGAACCGGGATCGAAACCAGTGTTC
CTGCTCGGTATGGAAATCAACCGAGACAGAGCCGCAGGGACAATTCTTTT
TGAACAGGAAGCGTATACCAACGCAGTGTTGGACAAGTTCGGCATGGCCG
ACGCGCGTCCGACGACATCTCCGTCTGAGGTTGGACTGGTGTCCGTCGTG
GAGGACGAGGTGATGTCAGCGGAAGATACCACATATTTCCGCTCCGCCAC
AGGCTCGCTTTTATATCTCAGCAGAAACTCAAACGTGTACTCAGAGTTCG
TGGCTTTGTCGAAGGGGTACAACATCATCAAGTACTTCCGCCACCTGCTG
GACACCATAAATCAGATTCAGGAAGAAGCAACCGTGGTGTGGGAGGACAA
CTCGAGAGCTCTAAAATTAACTCGCAGCTTCCGTATCACCCCAAGGACTA
CGCACATTGACGTAAAGTTTCACCACGTAAGGTCTCTGGTAGCTGATGAA
GTCGTAGACGTGAAGCAAATATCGACGTCGCTTCAGAAAGCGGATACTTT
ACGAAAGGGCTAA
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protein sequence of EsuBft820_3a-0001

>EsuBft820_3 ID=EsuBft820_3|Name=EsuBft820_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=346bp
MLGYNTTSKSWRLWDPAEPLKITNSAEVSFREVDARDVARPVHGSGPCPE
QGQIFQPGIITGAETRDEEPEPAEPNDGPDEEPPVVRKSGRTTKPRDRLN
LFTTEQVFETEYALVIGVQGFHEAETGTDNAAPVASLQAVHLIVAHAAKN
GLVLRQADIRTAFLHARMEPGSKPVFLLGMEINRDRAAGTILFEQEAYTN
AVLDKFGMADARPTTSPSEVGLVSVVEDEVMSAEDTTYFRSATGSLLYLS
RNSNVYSEFVALSKGYNIIKYFRHLLDTINQIQEEATVVWEDNSRALKLT
RSFRITPRTTHIDVKFHHVRSLVADEVVDVKQISTSLQKADTLRKG
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mRNA from alignment at Scaffold_347:75852..77700+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft820_3a-0001 ID=EsuBft820_3a-0001|Name=EsuBft820_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1849bp|location=Sequence derived from alignment at Scaffold_347:75852..77700+ (Ectocarpus subulatus male Bft15b)
TGCCAGGGCGAAGAAGTAGGACATGCTGGGATACAATACAACCAGCAAGT
CGTGGCGGCTATGGGACCCGGCGGAACCACTCAAAATTACAAACTCTGCT
GAAGTGTCATTCCGCGAGGTAGATGCCCGCGACGTCGCTCGCCCCGTGCA
CGGGTCTGGCCCATGTCCCGAACAAGGCCAGATTTTCCAGCCCGGCATTA
TCACTGGGGCCGAGACAAGAGACGAGGAACCAGAACCGGCAGAACCGAAC
GACGGACCGGACGAAGAACCGCCCGTGGTGCGCAAAAGCGGTCGAACGAC
AAAGCCGCGGGACCGTCTGAACCTGTTTACGACGGAGCAGGTGTTCGAAA
CAGAATACGCACTGGTGATCGGAGGTGAGATCGGGAACCTTGGTCAAGGG
ATACCTGGCCAACTAGGATACATGCCCGCCGATCCACCGAACTACCGCGC
AGCGGTCAACGGACCAGATGCCGTTGGATGGATGAAAAGCATTGAGGAGG
AGTATCGCTCCTTACTAGACCACGACGTTTATGAGTGGGTCGATTCCCCG
TGAGATGCTCAAATCATCCCGTCAAAATACATCTACAAATGGAAGTACAA
CGAGGCCGGCATCGCTGTGCGACATAAATCGAGAATCGTAGTGCAAGGAT
TTCACGAAGCTGAGACCGGAACCGACAATGCTGCACCGGTAGCGTCTCTC
CAAGCCGTCCATCTGATAGTTGCGCATGCTGCCAAGAATGGACTTGTTCT
TCGCCAAGCCGACATCAGGACGGCGTTCCTCCACGCGAGGATGGAACCGG
GATCGAAACCAGTGTACGTCATTCCCCCGGAAGGATTCTCGTGCGACAGC
GAGAGAGCCAGGCATCTGGAAGCTCAGAGCGTGGCTTTACGGGTTGCGTT
TTTTCCCAAAAGGCTGGTGGGGCACTCTGCACGATTTTCTCCTGAAGATC
GGATTTGTTGAGAGCACCGCTGAACAGGGCATGTACATCCTGGACGACGG
AGATGTGCTCCTTCTCGTTTATGTGGATGACATTCTGCTGACCGGGGAGG
ACGAGAACAAAGTGCTGAGCATAGTAGATTAGCTGAATGGGCGTTTCGAA
ACGATGGACCTGGGAGGAGCCAGGTTCCTGCTCGGTATGGAAATCAACCG
AGACAGAGCCGCAGGGACAATTCTTTTTGAACAGGAAGCGTATACCAACG
CAGTGTTGGACAAGTTCGGCATGGCCGACGCGCGTCCGACGACATCTCCG
TCTGAGGTTGGACTGGTGTCCGTCGTGGAGGACGAGGTGATGTCAGCGGA
AGATACCACATATTTCCGCTCCGCCACAGGCTCGCTTTTATATCTCAGCA
GAAACTCAAACGTGTACTCAGGTACCTGAAAGGGACGATATCAATCGGTG
TACGCTACGGCGAGGATGCCGAACATGGAAACGTCATTACGGCATTTGTC
GACTCAGATTTTGCAGGCGACCTAGACAACGGCTACCCCACCACGGGAGT
CGTCCTGTACTTCGCTGGTGGACCGGTGTAATGGACATCATCCAAGCAAA
CGGTGGTGGCGACCTCTTCCGTTGAAGCAGAGTTCGTGGCTTTGTCGAAG
GGGTACAACATCATCAAGTACTTCCGCCACCTGCTGGACACCATAAATCA
GATTCAGGAAGAAGCAACCGTGGTGTGGGAGGACAACTCGAGAGCTCTAA
AATTAACTCGCAGCTTCCGTATCACCCCAAGGACTACGCACATTGACGTA
AAGTTTCACCACGTAAGGTCTCTGGTAGCTGATGAAGTCGTAGACGTGAA
GCAAATATCGACGTCGCTTCAGAAAGCGGATACTTTACGAAAGGGCTAA
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Coding sequence (CDS) from alignment at Scaffold_347:75852..77700+

>EsuBft820_3a-0001 ID=EsuBft820_3a-0001|Name=EsuBft820_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1041bp|location=Sequence derived from alignment at Scaffold_347:75852..77700+ (Ectocarpus subulatus male Bft15b)
ATGCTGGGATACAATACAACCAGCAAGTCGTGGCGGCTATGGGACCCGGC
GGAACCACTCAAAATTACAAACTCTGCTGAAGTGTCATTCCGCGAGGTAG
ATGCCCGCGACGTCGCTCGCCCCGTGCACGGGTCTGGCCCATGTCCCGAA
CAAGGCCAGATTTTCCAGCCCGGCATTATCACTGGGGCCGAGACAAGAGA
CGAGGAACCAGAACCGGCAGAACCGAACGACGGACCGGACGAAGAACCGC
CCGTGGTGCGCAAAAGCGGTCGAACGACAAAGCCGCGGGACCGTCTGAAC
CTGTTTACGACGGAGCAGGTGTTCGAAACAGAATACGCACTGGTGATCGG
AGTGCAAGGATTTCACGAAGCTGAGACCGGAACCGACAATGCTGCACCGG
TAGCGTCTCTCCAAGCCGTCCATCTGATAGTTGCGCATGCTGCCAAGAAT
GGACTTGTTCTTCGCCAAGCCGACATCAGGACGGCGTTCCTCCACGCGAG
GATGGAACCGGGATCGAAACCAGTGTTCCTGCTCGGTATGGAAATCAACC
GAGACAGAGCCGCAGGGACAATTCTTTTTGAACAGGAAGCGTATACCAAC
GCAGTGTTGGACAAGTTCGGCATGGCCGACGCGCGTCCGACGACATCTCC
GTCTGAGGTTGGACTGGTGTCCGTCGTGGAGGACGAGGTGATGTCAGCGG
AAGATACCACATATTTCCGCTCCGCCACAGGCTCGCTTTTATATCTCAGC
AGAAACTCAAACGTGTACTCAGAGTTCGTGGCTTTGTCGAAGGGGTACAA
CATCATCAAGTACTTCCGCCACCTGCTGGACACCATAAATCAGATTCAGG
AAGAAGCAACCGTGGTGTGGGAGGACAACTCGAGAGCTCTAAAATTAACT
CGCAGCTTCCGTATCACCCCAAGGACTACGCACATTGACGTAAAGTTTCA
CCACGTAAGGTCTCTGGTAGCTGATGAAGTCGTAGACGTGAAGCAAATAT
CGACGTCGCTTCAGAAAGCGGATACTTTACGAAAGGGCTAA
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