Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 4530.OS08T0125300-01 |
| ProteomeId | EsuBft820_2 |
| Protein domains | IPR001584 |
| Protein domains | PTHR11439 |
| Protein domains | IPR012337 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 35493|Streptophyta |
| Length | 681 |
| Hectar predicted targeting category | other localisation |
| Evalue | 8.33e-27 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M5VU@4447|Liliopsida,3IIIB@38820|Poales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | gag-polypeptide of LTR copia-type |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
| GO | 0003824 |
| GO | 0015074 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft820_2a-0001 ID=EsuBft820_2a-0001|Name=EsuBft820_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=681bp|location=Sequence derived from alignment at Scaffold_347:75118..75798+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGGACATTGCAATGCGCGCTCCCTGAAGCAGCTCTCGGATAAGGAAGG
CACCGGCATCAAGTTCACCACCAACATTCGACCAGGTGACTGCGAAGTAT
GCGATGTATCTAGAAGCAAGAAGGCGAGTCACCACCCAGTTGGCCGCGCC
CGTTCACCGACGCGAATGATGCTTTTGCATCTGGACCTGTGGGGGAAACA
TACTGTGCCATCGTACAGCGGATGTCAGCACATCGCAATGTTCACCGACG
ACAAGTCTCGCATGCGGTGGGGCATCCCCCTGAAGACAAAGGATGAAGTG
ACTGACGCGCTCGAAACCCTGATTAAAGAAGTCGCCGACCCCGAGGGCAT
CTACATCGGGATAATCAAGTGCGATGGCGCAGCCGACTTCAAGGGTAGGT
ACTTAGCAATGTGTCCGTCCTTCGGGATTGCTTTGGAGACAAGCCCCCCG
TACGTCCCTCGAGGGAATGCTGTCGCCGAACGCGGTTTCGGGACTGTCAT
CGGTGCAGCACGTAGCCTCATGCTTGGAGCTCCGCACCTGCCGCGTCAAC
TGTGGGCGGAAGCCGTCAAGGCCGCCATTTACATCAAGAACCGCACACCT
ACTGACGTCCGGGACGGCAAAGCACCACTTGAGGTTTGGGAGGACAAACC
ACTCGGCAGCTTGAAGCACATGCATGAGTAG back to topprotein sequence of EsuBft820_2a-0001 >EsuBft820_2 ID=EsuBft820_2|Name=EsuBft820_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=226bp
MGHCNARSLKQLSDKEGTGIKFTTNIRPGDCEVCDVSRSKKASHHPVGRA
RSPTRMMLLHLDLWGKHTVPSYSGCQHIAMFTDDKSRMRWGIPLKTKDEV
TDALETLIKEVADPEGIYIGIIKCDGAADFKGRYLAMCPSFGIALETSPP
YVPRGNAVAERGFGTVIGAARSLMLGAPHLPRQLWAEAVKAAIYIKNRTP
TDVRDGKAPLEVWEDKPLGSLKHMHE back to topmRNA from alignment at Scaffold_347:75118..75798+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft820_2a-0001 ID=EsuBft820_2a-0001|Name=EsuBft820_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=681bp|location=Sequence derived from alignment at Scaffold_347:75118..75798+ (Ectocarpus subulatus male Bft15b)
ATGGGACATTGCAATGCGCGCTCCCTGAAGCAGCTCTCGGATAAGGAAGG
CACCGGCATCAAGTTCACCACCAACATTCGACCAGGTGACTGCGAAGTAT
GCGATGTATCTAGAAGCAAGAAGGCGAGTCACCACCCAGTTGGCCGCGCC
CGTTCACCGACGCGAATGATGCTTTTGCATCTGGACCTGTGGGGGAAACA
TACTGTGCCATCGTACAGCGGATGTCAGCACATCGCAATGTTCACCGACG
ACAAGTCTCGCATGCGGTGGGGCATCCCCCTGAAGACAAAGGATGAAGTG
ACTGACGCGCTCGAAACCCTGATTAAAGAAGTCGCCGACCCCGAGGGCAT
CTACATCGGGATAATCAAGTGCGATGGCGCAGCCGACTTCAAGGGTAGGT
ACTTAGCAATGTGTCCGTCCTTCGGGATTGCTTTGGAGACAAGCCCCCCG
TACGTCCCTCGAGGGAATGCTGTCGCCGAACGCGGTTTCGGGACTGTCAT
CGGTGCAGCACGTAGCCTCATGCTTGGAGCTCCGCACCTGCCGCGTCAAC
TGTGGGCGGAAGCCGTCAAGGCCGCCATTTACATCAAGAACCGCACACCT
ACTGACGTCCGGGACGGCAAAGCACCACTTGAGGTTTGGGAGGACAAACC
ACTCGGCAGCTTGAAGCACATGCATGAGTAG back to topCoding sequence (CDS) from alignment at Scaffold_347:75118..75798+ >EsuBft820_2a-0001 ID=EsuBft820_2a-0001|Name=EsuBft820_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=681bp|location=Sequence derived from alignment at Scaffold_347:75118..75798+ (Ectocarpus subulatus male Bft15b)
ATGGGACATTGCAATGCGCGCTCCCTGAAGCAGCTCTCGGATAAGGAAGG
CACCGGCATCAAGTTCACCACCAACATTCGACCAGGTGACTGCGAAGTAT
GCGATGTATCTAGAAGCAAGAAGGCGAGTCACCACCCAGTTGGCCGCGCC
CGTTCACCGACGCGAATGATGCTTTTGCATCTGGACCTGTGGGGGAAACA
TACTGTGCCATCGTACAGCGGATGTCAGCACATCGCAATGTTCACCGACG
ACAAGTCTCGCATGCGGTGGGGCATCCCCCTGAAGACAAAGGATGAAGTG
ACTGACGCGCTCGAAACCCTGATTAAAGAAGTCGCCGACCCCGAGGGCAT
CTACATCGGGATAATCAAGTGCGATGGCGCAGCCGACTTCAAGGGTAGGT
ACTTAGCAATGTGTCCGTCCTTCGGGATTGCTTTGGAGACAAGCCCCCCG
TACGTCCCTCGAGGGAATGCTGTCGCCGAACGCGGTTTCGGGACTGTCAT
CGGTGCAGCACGTAGCCTCATGCTTGGAGCTCCGCACCTGCCGCGTCAAC
TGTGGGCGGAAGCCGTCAAGGCCGCCATTTACATCAAGAACCGCACACCT
ACTGACGTCCGGGACGGCAAAGCACCACTTGAGGTTTGGGAGGACAAACC
ACTCGGCAGCTTGAAGCACATGCATGAGTAG back to top
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