EsuBft820_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft820_2a-0001
Unique NameEsuBft820_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_347contigScaffold_347:75118..75798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog4530.OS08T0125300-01
ProteomeIdEsuBft820_2
Protein domainsIPR001584
Protein domainsPTHR11439
Protein domainsIPR012337
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl35493|Streptophyta
Length681
Hectar predicted targeting categoryother localisation
Evalue8.33e-27
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M5VU@4447|Liliopsida,3IIIB@38820|Poales
Date last modified2016-06-14
Date creation2016-06-14
Descriptiongag-polypeptide of LTR copia-type
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0003824
GO0015074
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft820_2aEsuBft820_2aEctocarpus subulatus male Bft15bgeneScaffold_347 75118..75798 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft820_2a-0001-exonEsuBft820_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_347 75118..75798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft820_2a-0001-cdsEsuBft820_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_347 75118..75798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft820_2a-0001EsuBft820_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_347 75118..75798 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft820_2a-0001 ID=EsuBft820_2a-0001|Name=EsuBft820_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=681bp|location=Sequence derived from alignment at Scaffold_347:75118..75798+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACATTGCAATGCGCGCTCCCTGAAGCAGCTCTCGGATAAGGAAGG
CACCGGCATCAAGTTCACCACCAACATTCGACCAGGTGACTGCGAAGTAT
GCGATGTATCTAGAAGCAAGAAGGCGAGTCACCACCCAGTTGGCCGCGCC
CGTTCACCGACGCGAATGATGCTTTTGCATCTGGACCTGTGGGGGAAACA
TACTGTGCCATCGTACAGCGGATGTCAGCACATCGCAATGTTCACCGACG
ACAAGTCTCGCATGCGGTGGGGCATCCCCCTGAAGACAAAGGATGAAGTG
ACTGACGCGCTCGAAACCCTGATTAAAGAAGTCGCCGACCCCGAGGGCAT
CTACATCGGGATAATCAAGTGCGATGGCGCAGCCGACTTCAAGGGTAGGT
ACTTAGCAATGTGTCCGTCCTTCGGGATTGCTTTGGAGACAAGCCCCCCG
TACGTCCCTCGAGGGAATGCTGTCGCCGAACGCGGTTTCGGGACTGTCAT
CGGTGCAGCACGTAGCCTCATGCTTGGAGCTCCGCACCTGCCGCGTCAAC
TGTGGGCGGAAGCCGTCAAGGCCGCCATTTACATCAAGAACCGCACACCT
ACTGACGTCCGGGACGGCAAAGCACCACTTGAGGTTTGGGAGGACAAACC
ACTCGGCAGCTTGAAGCACATGCATGAGTAG
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protein sequence of EsuBft820_2a-0001

>EsuBft820_2 ID=EsuBft820_2|Name=EsuBft820_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=226bp
MGHCNARSLKQLSDKEGTGIKFTTNIRPGDCEVCDVSRSKKASHHPVGRA
RSPTRMMLLHLDLWGKHTVPSYSGCQHIAMFTDDKSRMRWGIPLKTKDEV
TDALETLIKEVADPEGIYIGIIKCDGAADFKGRYLAMCPSFGIALETSPP
YVPRGNAVAERGFGTVIGAARSLMLGAPHLPRQLWAEAVKAAIYIKNRTP
TDVRDGKAPLEVWEDKPLGSLKHMHE
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mRNA from alignment at Scaffold_347:75118..75798+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft820_2a-0001 ID=EsuBft820_2a-0001|Name=EsuBft820_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=681bp|location=Sequence derived from alignment at Scaffold_347:75118..75798+ (Ectocarpus subulatus male Bft15b)
ATGGGACATTGCAATGCGCGCTCCCTGAAGCAGCTCTCGGATAAGGAAGG
CACCGGCATCAAGTTCACCACCAACATTCGACCAGGTGACTGCGAAGTAT
GCGATGTATCTAGAAGCAAGAAGGCGAGTCACCACCCAGTTGGCCGCGCC
CGTTCACCGACGCGAATGATGCTTTTGCATCTGGACCTGTGGGGGAAACA
TACTGTGCCATCGTACAGCGGATGTCAGCACATCGCAATGTTCACCGACG
ACAAGTCTCGCATGCGGTGGGGCATCCCCCTGAAGACAAAGGATGAAGTG
ACTGACGCGCTCGAAACCCTGATTAAAGAAGTCGCCGACCCCGAGGGCAT
CTACATCGGGATAATCAAGTGCGATGGCGCAGCCGACTTCAAGGGTAGGT
ACTTAGCAATGTGTCCGTCCTTCGGGATTGCTTTGGAGACAAGCCCCCCG
TACGTCCCTCGAGGGAATGCTGTCGCCGAACGCGGTTTCGGGACTGTCAT
CGGTGCAGCACGTAGCCTCATGCTTGGAGCTCCGCACCTGCCGCGTCAAC
TGTGGGCGGAAGCCGTCAAGGCCGCCATTTACATCAAGAACCGCACACCT
ACTGACGTCCGGGACGGCAAAGCACCACTTGAGGTTTGGGAGGACAAACC
ACTCGGCAGCTTGAAGCACATGCATGAGTAG
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Coding sequence (CDS) from alignment at Scaffold_347:75118..75798+

>EsuBft820_2a-0001 ID=EsuBft820_2a-0001|Name=EsuBft820_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=681bp|location=Sequence derived from alignment at Scaffold_347:75118..75798+ (Ectocarpus subulatus male Bft15b)
ATGGGACATTGCAATGCGCGCTCCCTGAAGCAGCTCTCGGATAAGGAAGG
CACCGGCATCAAGTTCACCACCAACATTCGACCAGGTGACTGCGAAGTAT
GCGATGTATCTAGAAGCAAGAAGGCGAGTCACCACCCAGTTGGCCGCGCC
CGTTCACCGACGCGAATGATGCTTTTGCATCTGGACCTGTGGGGGAAACA
TACTGTGCCATCGTACAGCGGATGTCAGCACATCGCAATGTTCACCGACG
ACAAGTCTCGCATGCGGTGGGGCATCCCCCTGAAGACAAAGGATGAAGTG
ACTGACGCGCTCGAAACCCTGATTAAAGAAGTCGCCGACCCCGAGGGCAT
CTACATCGGGATAATCAAGTGCGATGGCGCAGCCGACTTCAAGGGTAGGT
ACTTAGCAATGTGTCCGTCCTTCGGGATTGCTTTGGAGACAAGCCCCCCG
TACGTCCCTCGAGGGAATGCTGTCGCCGAACGCGGTTTCGGGACTGTCAT
CGGTGCAGCACGTAGCCTCATGCTTGGAGCTCCGCACCTGCCGCGTCAAC
TGTGGGCGGAAGCCGTCAAGGCCGCCATTTACATCAAGAACCGCACACCT
ACTGACGTCCGGGACGGCAAAGCACCACTTGAGGTTTGGGAGGACAAACC
ACTCGGCAGCTTGAAGCACATGCATGAGTAG
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