EsuBft817_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft817_4a-0001
Unique Name	EsuBft817_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_390	contig	Scaffold_390:333536..334921 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6500.XP_005092035.1
ProteomeId	EsuBft817_4
Protein domains	Coil
Protein domains	PTHR25952
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	138
Evalue	1.99e-28
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BI15@33208\|Metazoa,3D94V@33213\|Bilateria
Date last modified	2016-06-15
Date creation	2016-06-15
Description	Ribonuclease H protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft817_4a	EsuBft817_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_390 333536..334921 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft817_4a-0001-exon	EsuBft817_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_390 333536..334921 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft817_4a-0001-cds	EsuBft817_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_390 333536..334921 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft817_4a-0001	EsuBft817_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_390 333536..334921 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_390:333536..334921-
coding sequence from alignment at Scaffold_390:333536..334921-

spliced messenger RNA

>EsuBft817_4a-0001 ID=EsuBft817_4a-0001|Name=EsuBft817_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1386bp|location=Sequence derived from alignment at Scaffold_390:333536..334921- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTATGGAAGGTGCTGGACAGGGCCGGGATTCCCGCGAAGCTGATCAA
AGTCATCCGCCAATTCCACAATGGACTGCGGGCCCGGGTGCGCATGGACG
ACGGAGAACTATCCAACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGA
TGTGTGCTATCCCCACTGATGTTCAACATCTTCTTCGCCGAGGTCATCGA
GGTCGTTGTCATCCGATTCAGCGAGGATGATGTTGTTCTGCGGAGCCTGG
TGTGCTTGGAGGAAGGGAAGACGGAAGCGGGGGGGGGGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGAAGGACTGGCGAGAATGATGACCATCATCGTTG
AGGTGTTTGGGGAGTTCGGGCTAACGGTGTCGGAGGAGAAGACAGAGACG
CTCCCGATGCGCGCAAAGGACAAGCCGACTACAACATCACAGAACGCCCC
GCCTCCACCGCTGACCATCGAAGCCGCGGGACAGAAATACGCCCAGACGA
CCGAGTTCCGGTACCTCGGTGGCCTCGTCAACGAACATGGCGACCTCACC
CGGGAGATCAACTACAGGAGCAGAGGAGCGTGGGCGTGCCACAGGCGATA
TGGCCGGGAGCTCTTCGACACACCGCAAGCGCCATCCCGACTCAAGGTCC
GCCTGCTCCAGGCGGAGGCGATGGAGGCACTGCTGTACGGTTGCATGACA
TGGTCACCACTCAGCGGCCACTATCAGACGCTGCGGTCGATACACCACCG
ACTGCTCCTTCGAGTTATCGAGTACAAGCGCAAGAAAGACACCTACCGGC
AGCTCTCTTACGCCCAGACGCTGAAGAGGGTCGAATGCCAGAGCGTTGAA
GCCACGATCCGACAACGACGCCTACTGTTCGCGGGAGCATTGGCAAGGCA
GCCGGACGGGCGACTCCCGAAACGACTGATGCTCGGCAAACTGGCAGGGG
GGAAGAAGCGACGTAAGGGGGGACAGGAACAGAACTGGCCGAAGCGCATG
CTCGACGATCTGAAGGCATTCGGGGCCGACCACGGGTCTACGAAAACCGA
TCCATGTTGTCTCGGAATCTCGGTACCGAAAGACACGGCACCGAAGTTAA
AGTGGACGGAAGCCGCGAAGGTAGAGGGGGGAGTACCCTGGCATGCTCAG
GGAGCTGAGAGGTTCATGACCTCCTGGCACGAGAAGGAAGAAGAGGCCAG
CCGACAACGGGCGCTCAAACGAAACCACAAGCCACCAACCAATGGGGCGG
GAGGGCGGCAGGAGACGGACGAGACGGTGAGGGAAGAAAGCAAACGAAAC
GAGACGGACCGAGTGGCGCGATACGTGCCGGATTGA

protein sequence of EsuBft817_4a-0001

>EsuBft817_4 ID=EsuBft817_4|Name=EsuBft817_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=461bp
MLWKVLDRAGIPAKLIKVIRQFHNGLRARVRMDDGELSNWFFVTQGVRQG
CVLSPLMFNIFFAEVIEVVVIRFSEDDVVLRSLVCLEEGKTEAGGGXXXX
XXXXXXXXXXXXXXXXXXXXXXEGLARMMTIIVEVFGEFGLTVSEEKTET
LPMRAKDKPTTTSQNAPPPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLT
REINYRSRGAWACHRRYGRELFDTPQAPSRLKVRLLQAEAMEALLYGCMT
WSPLSGHYQTLRSIHHRLLLRVIEYKRKKDTYRQLSYAQTLKRVECQSVE
ATIRQRRLLFAGALARQPDGRLPKRLMLGKLAGGKKRRKGGQEQNWPKRM
LDDLKAFGADHGSTKTDPCCLGISVPKDTAPKLKWTEAAKVEGGVPWHAQ
GAERFMTSWHEKEEEASRQRALKRNHKPPTNGAGGRQETDETVREESKRN
ETDRVARYVPD

mRNA from alignment at Scaffold_390:333536..334921-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft817_4a-0001 ID=EsuBft817_4a-0001|Name=EsuBft817_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1386bp|location=Sequence derived from alignment at Scaffold_390:333536..334921- (Ectocarpus subulatus male Bft15b)
ATGCTATGGAAGGTGCTGGACAGGGCCGGGATTCCCGCGAAGCTGATCAA
AGTCATCCGCCAATTCCACAATGGACTGCGGGCCCGGGTGCGCATGGACG
ACGGAGAACTATCCAACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGA
TGTGTGCTATCCCCACTGATGTTCAACATCTTCTTCGCCGAGGTCATCGA
GGTCGTTGTCATCCGATTCAGCGAGGATGATGTTGTTCTGCGGAGCCTGG
TGTGCTTGGAGGAAGGGAAGACGGAAGCGGGGGGGGGGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGAAGGACTGGCGAGAATGATGACCATCATCGTTG
AGGTGTTTGGGGAGTTCGGGCTAACGGTGTCGGAGGAGAAGACAGAGACG
CTCCCGATGCGCGCAAAGGACAAGCCGACTACAACATCACAGAACGCCCC
GCCTCCACCGCTGACCATCGAAGCCGCGGGACAGAAATACGCCCAGACGA
CCGAGTTCCGGTACCTCGGTGGCCTCGTCAACGAACATGGCGACCTCACC
CGGGAGATCAACTACAGGAGCAGAGGAGCGTGGGCGTGCCACAGGCGATA
TGGCCGGGAGCTCTTCGACACACCGCAAGCGCCATCCCGACTCAAGGTCC
GCCTGCTCCAGGCGGAGGCGATGGAGGCACTGCTGTACGGTTGCATGACA
TGGTCACCACTCAGCGGCCACTATCAGACGCTGCGGTCGATACACCACCG
ACTGCTCCTTCGAGTTATCGAGTACAAGCGCAAGAAAGACACCTACCGGC
AGCTCTCTTACGCCCAGACGCTGAAGAGGGTCGAATGCCAGAGCGTTGAA
GCCACGATCCGACAACGACGCCTACTGTTCGCGGGAGCATTGGCAAGGCA
GCCGGACGGGCGACTCCCGAAACGACTGATGCTCGGCAAACTGGCAGGGG
GGAAGAAGCGACGTAAGGGGGGACAGGAACAGAACTGGCCGAAGCGCATG
CTCGACGATCTGAAGGCATTCGGGGCCGACCACGGGTCTACGAAAACCGA
TCCATGTTGTCTCGGAATCTCGGTACCGAAAGACACGGCACCGAAGTTAA
AGTGGACGGAAGCCGCGAAGGTAGAGGGGGGAGTACCCTGGCATGCTCAG
GGAGCTGAGAGGTTCATGACCTCCTGGCACGAGAAGGAAGAAGAGGCCAG
CCGACAACGGGCGCTCAAACGAAACCACAAGCCACCAACCAATGGGGCGG
GAGGGCGGCAGGAGACGGACGAGACGGTGAGGGAAGAAAGCAAACGAAAC
GAGACGGACCGAGTGGCGCGATACGTGCCGGATTGA

Coding sequence (CDS) from alignment at Scaffold_390:333536..334921-

>EsuBft817_4a-0001 ID=EsuBft817_4a-0001|Name=EsuBft817_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1386bp|location=Sequence derived from alignment at Scaffold_390:333536..334921- (Ectocarpus subulatus male Bft15b)
ATGCTATGGAAGGTGCTGGACAGGGCCGGGATTCCCGCGAAGCTGATCAA
AGTCATCCGCCAATTCCACAATGGACTGCGGGCCCGGGTGCGCATGGACG
ACGGAGAACTATCCAACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGA
TGTGTGCTATCCCCACTGATGTTCAACATCTTCTTCGCCGAGGTCATCGA
GGTCGTTGTCATCCGATTCAGCGAGGATGATGTTGTTCTGCGGAGCCTGG
TGTGCTTGGAGGAAGGGAAGACGGAAGCGGGGGGGGGGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGAAGGACTGGCGAGAATGATGACCATCATCGTTG
AGGTGTTTGGGGAGTTCGGGCTAACGGTGTCGGAGGAGAAGACAGAGACG
CTCCCGATGCGCGCAAAGGACAAGCCGACTACAACATCACAGAACGCCCC
GCCTCCACCGCTGACCATCGAAGCCGCGGGACAGAAATACGCCCAGACGA
CCGAGTTCCGGTACCTCGGTGGCCTCGTCAACGAACATGGCGACCTCACC
CGGGAGATCAACTACAGGAGCAGAGGAGCGTGGGCGTGCCACAGGCGATA
TGGCCGGGAGCTCTTCGACACACCGCAAGCGCCATCCCGACTCAAGGTCC
GCCTGCTCCAGGCGGAGGCGATGGAGGCACTGCTGTACGGTTGCATGACA
TGGTCACCACTCAGCGGCCACTATCAGACGCTGCGGTCGATACACCACCG
ACTGCTCCTTCGAGTTATCGAGTACAAGCGCAAGAAAGACACCTACCGGC
AGCTCTCTTACGCCCAGACGCTGAAGAGGGTCGAATGCCAGAGCGTTGAA
GCCACGATCCGACAACGACGCCTACTGTTCGCGGGAGCATTGGCAAGGCA
GCCGGACGGGCGACTCCCGAAACGACTGATGCTCGGCAAACTGGCAGGGG
GGAAGAAGCGACGTAAGGGGGGACAGGAACAGAACTGGCCGAAGCGCATG
CTCGACGATCTGAAGGCATTCGGGGCCGACCACGGGTCTACGAAAACCGA
TCCATGTTGTCTCGGAATCTCGGTACCGAAAGACACGGCACCGAAGTTAA
AGTGGACGGAAGCCGCGAAGGTAGAGGGGGGAGTACCCTGGCATGCTCAG
GGAGCTGAGAGGTTCATGACCTCCTGGCACGAGAAGGAAGAAGAGGCCAG
CCGACAACGGGCGCTCAAACGAAACCACAAGCCACCAACCAATGGGGCGG
GAGGGCGGCAGGAGACGGACGAGACGGTGAGGGAAGAAAGCAAACGAAAC
GAGACGGACCGAGTGGCGCGATACGTGCCGGATTGA