EsuBft817_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft817_3a-0001
Unique Name	EsuBft817_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_390	contig	Scaffold_390:335662..339053 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FI63
ProteomeId	EsuBft817_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	6
Max annot lvl	2759\|Eukaryota
Length	218
Hectar predicted targeting category	other localisation
Evalue	1.52e-190
EggNOG OGs	2D0G2@1\|root,2SE3H@2759\|Eukaryota
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-10_003380.1
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft817_3a	EsuBft817_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_390 335662..339053 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft817_3a-0001	EsuBft817_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_390 335662..339053 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft817_3a-0001-exon	agat-exon-88653	Ectocarpus subulatus male Bft15b	exon	Scaffold_390 335662..336190 +
EsuBft817_3a-0001-exon	agat-exon-88651	Ectocarpus subulatus male Bft15b	exon	Scaffold_390 336489..336876 +
EsuBft817_3a-0001-exon	EsuBft817_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_390 337047..337244 +
EsuBft817_3a-0001-exon	agat-exon-88652	Ectocarpus subulatus male Bft15b	exon	Scaffold_390 337585..337941 +
EsuBft817_3a-0001-exon	agat-exon-88650	Ectocarpus subulatus male Bft15b	exon	Scaffold_390 338154..338601 +
EsuBft817_3a-0001-exon	agat-exon-88649	Ectocarpus subulatus male Bft15b	exon	Scaffold_390 338793..339053 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft817_3a-0001-cds	EsuBft817_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_390 335662..336190 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_390:335662..339053+
coding sequence from alignment at Scaffold_390:335662..339053+

spliced messenger RNA

>EsuBft817_3a-0001 ID=EsuBft817_3a-0001|Name=EsuBft817_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2181bp|location=Sequence derived from alignment at Scaffold_390:335662..339053+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGATTTATTCCCGTGCTTTTCATGTGCTCTTCAGGACATGTGTGC
ACTCACCAAAACCGACCTCTCTATCGCGCAGGATGACGTCTACCCGAAAG
CCCCTTCCATCATGTTCTACAAGATGTTCCTCGACGAGAGCGTTCGCTTC
AGCCTCTCCGAGTACGACGCGCTCTCCATCATCGAGCCGGACGTGCTCGT
CGCCAGCGACAACTCTTTCGAGGAGCTTTACCACGCCGCGTTCCGCGTGA
ACGAGGAGTTCTGGGTGAAGGGAAGCAACCTCGAGGGCACCTCGTTCCCC
TCAAGCGCTGAGGCGTCGGAGATGTGGCAGGTGCTCGGCCACATCAACGG
CAACGCCATCTACAACAACGACGACCCGGCGTTCGTCGAGTACGTGGAGT
ACACTCGGGCCCGCTGGGGATACGAGCACCCGTACGACGTGGCGCTGTGG
ATGACTATCTCGGACTTCCCGTATAGCAGGCCTCTCTACCAGCGGTACTC
GAGCAAGTTCGTCGTAACCAACCTGGTGGGCAACTACAGCAGGTACACAA
CGATGATTCGCCCGCAACCTGGCGAAGGCATGAGACCCAATCCCCCGCCC
CTCTACTGGGTCAGCAATAACAACAGTCCCACCGTTGACTTCTCCATGCC
CGCTCCTTTGCACGTCCGCTACGTCTTCAAGATCTCGTACGTCGGAGACG
AGCACGTGACCCAGGACACAGTCTCCGACGCCGTTGCCGGCAAGACTCTT
TTCATCCACGGCGGTGACGTAGCGGACGTCATAACCGCCTCCGCCCCGCC
CCCGCCCCCCGTTGTTGTCCAAGAAACTGCGCGAAGGAGCCAGCGTCGCC
GAAAACTCCAGAAGCGCAGGACGCGCGGGAATCGGAGGAGGGGGAATGAC
GGCGATGAAACCCTCAAGTGCACGGACGGGTGCAAGTACACGAGCAACGA
CGGGACCAGGGGACGCGTGTGTGACGCGAACTGCTCGAGGCGTGACGTGC
ACGGTACCCTCGGATGCGGCACGAAGGACGGGGCGTACGGGACGGAATGC
CGCGCTTGCTACAACGACGGCGACGAGGCACACAAGCAAGATACACCGGG
GAACCGGGCGATCATGTGCTCGACCGTGATGCCAGTGGACGTCCGCAGCC
TTTGGCTATCCATCGACAACGAGGACTATTCTCTTCAAATCGGGCAAGCG
ATGGAAGGAGAGGATGGCGAGGAGGAAGTGGAGGGCAGCTTCGAGCGTGT
AGGCGTCGATGGTGTCAGGGAGGGTGTTATCTCCTTTTTCGAGGAGGCGG
CCGAACGACCATTTTTCCAGGACCTGAAGCGCGGCAACCTGTGCGCCTTC
GTCGGTGGGCGGGTAGACGAGGAGGCCATGTGGGAGGTGACGGTGAAGAG
CATCCTGCAGTTCATGCCGGGCATGAGGGTGGCCATCGCGGCTGGGGCGA
AGGGACTTGACGCATACGAGAGGTCCATGGGCGGTCGCCCCGGTGTCACC
ATTTCCAGCACCCAGAATCCCGCCACGGCGAGCCTGTTCGCCGATCGGTT
CTGCGGGGCCGGCACCGCTCTCATCTTGTACGTCGAGCCGGGGTCCGTTC
TCTCCCGGCCCTTCACCTTCAAGGATACCCACTCCCCGCGGGGCGACCTC
CTGGTCGTGCACGGGGGTGGTCAGGGGAGCTACCGCAACGACGAGCGGAG
CCGTCGCTCGGGGTTGGTCCTCGGATTGGAGGCGCCGTCCTTCACGCGCG
GCACCGACCTGATGCTGCCGGTCGGCGCAAACAAGGACCTCCGGGAGTCG
CTGGGAATGGAAATGCAGGCAGACAGCGTACGGCGCGACGGCGACGGGGC
TGCGGTGACGGCCCTGGCCGAACCGGTGGACTTCGAGGAAGTTTCCTCCG
TCCCTCAGGCAAGAAACCGTATGTTGGCCGCGCTCGCCTATGCCCGCAAC
ACGCCGGGAGTGTGGTTTGGCGACCCCCAGGTCTGGTCGGGTCAACGCCT
CTTTCAGGAGGCGTCCATCTGGGATATTCCCCTGGCCAAGCCCCGCTTCA
CCTGTGCCATCGCCCTTACCCTGGAGCCCGATAGCCTACACGCTGCCACA
ACTTTGCAAAACAACCTTGACTTCTTCTCCAGAGGGGGGAAATGCGAAGA
CGGTTTGATCGAATACTCGAGATGGTTTTGA

protein sequence of EsuBft817_3a-0001

>EsuBft817_3 ID=EsuBft817_3|Name=EsuBft817_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=726bp
MVDLFPCFSCALQDMCALTKTDLSIAQDDVYPKAPSIMFYKMFLDESVRF
SLSEYDALSIIEPDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFP
SSAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALW
MTISDFPYSRPLYQRYSSKFVVTNLVGNYSRYTTMIRPQPGEGMRPNPPP
LYWVSNNNSPTVDFSMPAPLHVRYVFKISYVGDEHVTQDTVSDAVAGKTL
FIHGGDVADVITASAPPPPPVVVQETARRSQRRRKLQKRRTRGNRRRGND
GDETLKCTDGCKYTSNDGTRGRVCDANCSRRDVHGTLGCGTKDGAYGTEC
RACYNDGDEAHKQDTPGNRAIMCSTVMPVDVRSLWLSIDNEDYSLQIGQA
MEGEDGEEEVEGSFERVGVDGVREGVISFFEEAAERPFFQDLKRGNLCAF
VGGRVDEEAMWEVTVKSILQFMPGMRVAIAAGAKGLDAYERSMGGRPGVT
ISSTQNPATASLFADRFCGAGTALILYVEPGSVLSRPFTFKDTHSPRGDL
LVVHGGGQGSYRNDERSRRSGLVLGLEAPSFTRGTDLMLPVGANKDLRES
LGMEMQADSVRRDGDGAAVTALAEPVDFEEVSSVPQARNRMLAALAYARN
TPGVWFGDPQVWSGQRLFQEASIWDIPLAKPRFTCAIALTLEPDSLHAAT
TLQNNLDFFSRGGKCEDGLIEYSRWF

mRNA from alignment at Scaffold_390:335662..339053+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft817_3a-0001 ID=EsuBft817_3a-0001|Name=EsuBft817_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3392bp|location=Sequence derived from alignment at Scaffold_390:335662..339053+ (Ectocarpus subulatus male Bft15b)
ATGGTCGATTTATTCCCGTGCTTTTCATGTGCTCTTCAGGACATGTGTGC
ACTCACCAAAACCGACCTCTCTATCGCGCAGGATGACGTCTACCCGAAAG
CCCCTTCCATCATGTTCTACAAGATGTTCCTCGACGAGAGCGTTCGCTTC
AGCCTCTCCGAGTACGACGCGCTCTCCATCATCGAGCCGGACGTGCTCGT
CGCCAGCGACAACTCTTTCGAGGAGCTTTACCACGCCGCGTTCCGCGTGA
ACGAGGAGTTCTGGGTGAAGGGAAGCAACCTCGAGGGCACCTCGTTCCCC
TCAAGCGCTGAGGCGTCGGAGATGTGGCAGGTGCTCGGCCACATCAACGG
CAACGCCATCTACAACAACGACGACCCGGCGTTCGTCGAGTACGTGGAGT
ACACTCGGGCCCGCTGGGGATACGAGCACCCGTACGACGTGGCGCTGTGG
ATGACTATCTCGGACTTCCCGTATAGCAGGCCTCTCTACCAGCGGTACTC
GAGCAAGTTCGTCGTAACCAACCTGGTGGGTAAACGGGGCGGAGTAGTAG
GATGACATCGACGAAACCTTGTTTTGATTTCGAGTAGCTTCGCGTTTGAA
GCACGGCGACGGGCATCGTTCGTGTTTGAAGAAGATAGCTGTACGTTGCA
TTTCAGCGGTAGTCTGTGCACACGGTAGCGTCGATGAAGCTCCAATGACG
ATGAACAATGGTACGATTTACGATATCGCCTTGAGGAGATCTGAGTAGGG
CAAAGAAATCAGGAAGAATGTAGCCGCCTGGTTGTCTCGAAAATCGTCAT
TAGAGTGCACCAGTCACACCTACCTAGGCAACTACAGCAGGTACACAACG
ATGATTCGCCCGCAACCTGGCGAAGGCATGAGACCCAATCCCCCGCCCCT
CTACTGGGTCAGCAATAACAACAGTCCCACCGTTGACTTCTCCATGCCCG
CTCCTTTGCACGTCCGCTACGTCTTCAAGATCTCGTACGTCGGAGACGAG
CACGTGACCCAGGACACAGTCTCCGACGCCGTTGCCGGCAAGACTCTTTT
CATCCACGGCGGTGACGTAGCGGACGTCATAACCGCCTCCGCCCCGCCCC
CGCCCCCCGTTGTTGTCCAAGAAACTGCGCGAAGGAGCCAGCGTCGCCGA
AAACTCCAGAAGCGCAGGACGCGCGGGAATCGGAGGAGGGGGAATGACGG
CGATGAAACCCTCAAGTGCGTATGCCGCGGCAATCGGTATTGGTTCTTGC
TGTTGACTTGATGATTTTTAAATATCTTCCTACCAAAATGAACGGGGCAG
GTGGCCATGTTCCACCAAGATCGCGTTGCCTCGTACAACAGTTAACCTCC
CGCCGCCGCTCTCCATCTCCTGGCGCTCCTAACAGGTGCACGGACGGGTG
CAAGTACACGAGCAACGACGGGACCAGGGGACGCGTGTGTGACGCGAACT
GCTCGAGGCGTGACGTGCACGGTACCCTCGGATGCGGCACGAAGGACGGG
GCGTACGGGACGGAATGCCGCGCTTGCTACAACGACGGCGACGAGGCACA
CAAGCAAGATACACCGGGGAACCGGGCGATCATGTGAGACGCATGACGCG
CAGGGCGTGGCCTTGGGCGACCTCTACCTAGTGGTTGCGACTGATGAACT
GGAGACAATCATTATTGCCTGACTCATGAGTAACAGGTTCAAGCTCAGGC
TTGCATATGGTGACATACTCCTCTGAACGATGCGTGTGGGAATCAGCTCG
GCTGATGAGACCTGCCCTGCGCAACATGTGTCCAGTGCAGTGCTGTAGCG
GTTGCGGGATGGCGACGGCGGCTGGCGACTTTTGTTGGACGACACTTTTC
ACTTTTCGCTCGACGCATCGCCTGATGCACCCCGTTGTCACGCCTACCTC
TCTCGCCCGACTGATCTCGACAGGTGCTCGACCGTGATGCCAGTGGACGT
CCGCAGCCTTTGGCTATCCATCGACAACGAGGACTATTCTCTTCAAATCG
GGCAAGCGATGGAAGGAGAGGATGGCGAGGAGGAAGTGGAGGGCAGCTTC
GAGCGTGTAGGCGTCGATGGTGTCAGGGAGGGTGTTATCTCCTTTTTCGA
GGAGGCGGCCGAACGACCATTTTTCCAGGACCTGAAGCGCGGCAACCTGT
GCGCCTTCGTCGGTGGGCGGGTAGACGAGGAGGCCATGTGGGAGGTGACG
GTGAAGAGCATCCTGCAGTTCATGCCGGGCATGAGGGTGGCCATCGCGGC
TGGGGCGAAGGGACTTGACGCATACGAGAGGTGTGTGTGTGTCGGGGTAT
TGTAGGATCACTTTGTGCTGGCTTTCCGGTGTGTGCTGCGTCGGTCACCA
CGTTGAGGTTTCGCCTGTGTAGAAGGACAATCGGCTTTTAATGAACCTCT
CCGTTTCCCGTACTCGAGGATAGGATTCCTTATGACGACCGTGTGTTTCT
CTTGTCGTGTTCGTTTCCCTCCTTCTTTCCGGGCAATTCTAGGTCCATGG
GCGGTCGCCCCGGTGTCACCATTTCCAGCACCCAGAATCCCGCCACGGCG
AGCCTGTTCGCCGATCGGTTCTGCGGGGCCGGCACCGCTCTCATCTTGTA
CGTCGAGCCGGGGTCCGTTCTCTCCCGGCCCTTCACCTTCAAGGATACCC
ACTCCCCGCGGGGCGACCTCCTGGTCGTGCACGGGGGTGGTCAGGGGAGC
TACCGCAACGACGAGCGGAGCCGTCGCTCGGGGTTGGTCCTCGGATTGGA
GGCGCCGTCCTTCACGCGCGGCACCGACCTGATGCTGCCGGTCGGCGCAA
ACAAGGACCTCCGGGAGTCGCTGGGAATGGAAATGCAGGCAGACAGCGTA
CGGCGCGACGGCGACGGGGCTGCGGTGACGGCCCTGGCCGAACCGGTGGA
CTTCGAGGAAGTTTCCTCCGTCCCTCAGGCAAGAAACCGTGTGCGTGCGT
GCGCAAGGATGTCTGTTTGCTTTGTTGTCATGGGCGAGGTGCTTTGGCGC
GAGGCGGGGTAGATGGTATACCGTGAACTGTTTAAGCCGCAGGGCGGTGG
CGTGAGAAAATCTGAACGTTGCAGACCCCGAACACGCGGCGTTTTGAAGA
TCCTTCTGCTGTGCTGTTCTCTTTGTTGCAGATGTTGGCCGCGCTCGCCT
ATGCCCGCAACACGCCGGGAGTGTGGTTTGGCGACCCCCAGGTCTGGTCG
GGTCAACGCCTCTTTCAGGAGGCGTCCATCTGGGATATTCCCCTGGCCAA
GCCCCGCTTCACCTGTGCCATCGCCCTTACCCTGGAGCCCGATAGCCTAC
ACGCTGCCACAACTTTGCAAAACAACCTTGACTTCTTCTCCAGAGGGGGG
AAATGCGAAGACGGTTTGATCGAATACTCGAGATGGTTTTGA

Coding sequence (CDS) from alignment at Scaffold_390:335662..339053+

>EsuBft817_3a-0001 ID=EsuBft817_3a-0001|Name=EsuBft817_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2181bp|location=Sequence derived from alignment at Scaffold_390:335662..339053+ (Ectocarpus subulatus male Bft15b)
ATGGTCGATTTATTCCCGTGCTTTTCATGTGCTCTTCAGGACATGTGTGC
ACTCACCAAAACCGACCTCTCTATCGCGCAGGATGACGTCTACCCGAAAG
CCCCTTCCATCATGTTCTACAAGATGTTCCTCGACGAGAGCGTTCGCTTC
AGCCTCTCCGAGTACGACGCGCTCTCCATCATCGAGCCGGACGTGCTCGT
CGCCAGCGACAACTCTTTCGAGGAGCTTTACCACGCCGCGTTCCGCGTGA
ACGAGGAGTTCTGGGTGAAGGGAAGCAACCTCGAGGGCACCTCGTTCCCC
TCAAGCGCTGAGGCGTCGGAGATGTGGCAGGTGCTCGGCCACATCAACGG
CAACGCCATCTACAACAACGACGACCCGGCGTTCGTCGAGTACGTGGAGT
ACACTCGGGCCCGCTGGGGATACGAGCACCCGTACGACGTGGCGCTGTGG
ATGACTATCTCGGACTTCCCGTATAGCAGGCCTCTCTACCAGCGGTACTC
GAGCAAGTTCGTCGTAACCAACCTGGTGGGCAACTACAGCAGGTACACAA
CGATGATTCGCCCGCAACCTGGCGAAGGCATGAGACCCAATCCCCCGCCC
CTCTACTGGGTCAGCAATAACAACAGTCCCACCGTTGACTTCTCCATGCC
CGCTCCTTTGCACGTCCGCTACGTCTTCAAGATCTCGTACGTCGGAGACG
AGCACGTGACCCAGGACACAGTCTCCGACGCCGTTGCCGGCAAGACTCTT
TTCATCCACGGCGGTGACGTAGCGGACGTCATAACCGCCTCCGCCCCGCC
CCCGCCCCCCGTTGTTGTCCAAGAAACTGCGCGAAGGAGCCAGCGTCGCC
GAAAACTCCAGAAGCGCAGGACGCGCGGGAATCGGAGGAGGGGGAATGAC
GGCGATGAAACCCTCAAGTGCACGGACGGGTGCAAGTACACGAGCAACGA
CGGGACCAGGGGACGCGTGTGTGACGCGAACTGCTCGAGGCGTGACGTGC
ACGGTACCCTCGGATGCGGCACGAAGGACGGGGCGTACGGGACGGAATGC
CGCGCTTGCTACAACGACGGCGACGAGGCACACAAGCAAGATACACCGGG
GAACCGGGCGATCATGTGCTCGACCGTGATGCCAGTGGACGTCCGCAGCC
TTTGGCTATCCATCGACAACGAGGACTATTCTCTTCAAATCGGGCAAGCG
ATGGAAGGAGAGGATGGCGAGGAGGAAGTGGAGGGCAGCTTCGAGCGTGT
AGGCGTCGATGGTGTCAGGGAGGGTGTTATCTCCTTTTTCGAGGAGGCGG
CCGAACGACCATTTTTCCAGGACCTGAAGCGCGGCAACCTGTGCGCCTTC
GTCGGTGGGCGGGTAGACGAGGAGGCCATGTGGGAGGTGACGGTGAAGAG
CATCCTGCAGTTCATGCCGGGCATGAGGGTGGCCATCGCGGCTGGGGCGA
AGGGACTTGACGCATACGAGAGGTCCATGGGCGGTCGCCCCGGTGTCACC
ATTTCCAGCACCCAGAATCCCGCCACGGCGAGCCTGTTCGCCGATCGGTT
CTGCGGGGCCGGCACCGCTCTCATCTTGTACGTCGAGCCGGGGTCCGTTC
TCTCCCGGCCCTTCACCTTCAAGGATACCCACTCCCCGCGGGGCGACCTC
CTGGTCGTGCACGGGGGTGGTCAGGGGAGCTACCGCAACGACGAGCGGAG
CCGTCGCTCGGGGTTGGTCCTCGGATTGGAGGCGCCGTCCTTCACGCGCG
GCACCGACCTGATGCTGCCGGTCGGCGCAAACAAGGACCTCCGGGAGTCG
CTGGGAATGGAAATGCAGGCAGACAGCGTACGGCGCGACGGCGACGGGGC
TGCGGTGACGGCCCTGGCCGAACCGGTGGACTTCGAGGAAGTTTCCTCCG
TCCCTCAGGCAAGAAACCGTATGTTGGCCGCGCTCGCCTATGCCCGCAAC
ACGCCGGGAGTGTGGTTTGGCGACCCCCAGGTCTGGTCGGGTCAACGCCT
CTTTCAGGAGGCGTCCATCTGGGATATTCCCCTGGCCAAGCCCCGCTTCA
CCTGTGCCATCGCCCTTACCCTGGAGCCCGATAGCCTACACGCTGCCACA
ACTTTGCAAAACAACCTTGACTTCTTCTCCAGAGGGGGGAAATGCGAAGA
CGGTTTGATCGAATACTCGAGATGGTTTTGA