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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 65071.PYU1_T003424 |
| ProteomeId | EsuBft816_5 |
| Protein domains | IPR028031 |
| Protein domains | IPR027989 |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SignalP-TM |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SignalP-noTM |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | IPR027986 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | t-cell activation mitochondrial os:mus musculus gn:tcaim pe:2 sv:1 [Automatic annotation] |
| Nb exon | 5 |
| Max annot lvl | 121069|Pythiales |
| Length | 2667 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 3.55e-11 |
| EggNOG OGs | 2C7FW@1|root,2RWC1@2759|Eukaryota,1MD0V@121069|Pythiales |
| Ec32 ortholog description | Domain of unknown function DUF4461 |
| Ec32 ortholog | Ec-11_003310.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Source PGD |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft816_5a-0001 ID=EsuBft816_5a-0001|Name=EsuBft816_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2667bp|location=Sequence derived from alignment at Scaffold_464:134828..139050- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TCCACGTCCTACTCGCGCTATCTCTCCGTCTCCGTGCGCTGACAAGGCGG CTTGGAAGCTGGCGTGTTAGGTAACAACGGTGTGATGACGTGGGGGATGT GATCATACCCACTCACAACCGCGTACATTCAGGAACCAAGCACCAAGTCG GAAGGAGAGCGCCCTCGGTCGTGTATTGTACTTGCGTCGCAGTTTTGAAT CTTCGCTCCGCAGACGGAGACACGAACACGCCAGGACAGGACACGGGTAG CCTGCCCCTTACGGTGGGTTCTCCGCACCTTGCGTGGGTCTCAGCATGAT GTTGATGTTGAAGGCTCTTGGCTCGATTTGTTGCCGTTCGGCAGCAGCGG CAGTACGGACGACACCACCGCTAGAGAGGGCGGCCATACCCATATCCGCC ACGATGCGGAGGCTTAGCACCAGCACCCACAGCGGGAGGACCACATCGCC GGAGCAGCATCAGGAGTGGAAGTCGGTGTACAGAGCCTTCCTTCTCCACG TGCATCCTGATTTCTTCCACGAGTCTCCCAAGAAACGCGCGGTGAACGAG AAAAGTCTCAAGTCGCTGTCCCAACATCTTGACCGACTTGGCGGCGAGGA CACCCGCAGTGGCGGTGTGCACAGCAGGAGCAATGCCGCCAACGGGAGCG CTTCGCCGCTGGTTTTCTTCCTAAAGCAAGCCGGAGACGAAGGCGCCGGC TCTAAGAGCGACGGAAGCCCCTCGCGTGGGAAGGTCATGCTGCCGCTAGG ATCTCACCACCAGATGGCGACACATTTGTACGACTCCGGCATGTCAGGCG TCAGTCCCCCACCAGCCCACGCCGAACAAGCTTCGACACGTCGTCACCAC AGCAGTCGCCCTGTCGATAGCAGCAACAACGACAACCCCTCGAGGTGGCA CGGCTGGGAGGATGATTTGTTCGGCGGGACGGCAGCCAACAGGGCGTGGG ACGAGGCGGCGGCTGGTCGAAACGGGAGTAGAGACACACACGGTCGGTCA GCCTTCAGCAGCGACGACGACAAGACCCGCGAAGGGAGACAGAGGACGAC GGAGTGGGGCGCGGCCTTCGAGCGTCGCAGCGGCCATGCCTCGTGGCTGG GACAGATCCTGTCCACGGATGAAGGGAGGGCCCTAGTCAGGGAGCGCCGG TCTAGCTCGAGGAAGGTTCGACGGCTGGTGGGAGAGCTGCGGGAGCAATA CGGCTTTGGCGAGTTCACCTTCAGGTGCGGCTGGAGTAAGTCGAATCTTT GTGTGGCTCTGGGCTCCCTGGTGGAGACATGCCGCGCCCGTCGAGGAGAG TTTCTCGTGAACGATTTCGGTGGTCTCGAAGTGGTGTTCCGGAATGACCC GTCCGTCCTGCACAAGGGGGAGATCCGGCTGTGCCCCTCCGACGTGCCGA ACCAGTGGGTATCGGCGCTACGACGCGTCACCCCCGCCGTGCTTTCCGCG GCGGAAGAGCAATCCCGCGAGATGATTTCCCTGCAGGAGAGGGCGTCGAG GGCTCTGCGAGGGGCCCGTCTTTCGAGAGGGCTTTCCTGCTCGAAAAGCA GATATCGCGACTTCTTGAGCAAGGTTTGCGCAGCGGCGGACGCTGAGCCC GACGAAGGTGACGGTGGTGGTGGCGATGCAGCGGCAGATTTGGTGAAAGG CGATTGGTCGGATTTGATGTGCAGGGTAGAGGAGGGCTTCCGTCGTGCGT CCACGGTCCTAGAGGACGGCACTATTCAGGTCGGCTCCGACATGACCCTC AAGACCCTTCGGCGGTGCCTCGGGAGAGACTCGGACAGCTCTTCCGCCGC CACCGCCGAGTACCTCGAGCTGGCGGTCGCGGCGGCTGCGACGGCCGAGC GCTGCCGGCAGGCCCTCGGCCTCGAATCCATCAAGCGGTCCCGCCATACC GTCGGCAACTCGGAGATGGTCATGGCCTGCGAAGCCCTCGTCAGGTTCAG CGAGCGGGCGAAGAGCGGCGGGGACTTGCGAGCGGAGAAGGAGGCGGTCG CCGCTCGGCGACGGTTGAGGGGCCACTGCGTTAGGGTGGTGGGGTCGAGG GTGGGCGTTTGCGACGGGGTGACGGAAGATGGGGAAATCGTGCTCCCCTG GAACTGGTGGGAAGAGGAGGATGGAGAGGAGCGACGGTCTTCGGCTCCGG TCTGGTGATGATCATTGTGTTTCTATGTGTTTTCGGTCGGTTCCGAGAAA ATTGAACCGGGTAATTTATTCCTGATAGAATTAGACAAGAGGCTCAACGC ATAGAACCGGCCACGGTGATTCCCTTTTTTCGCCTGGGATTTGGTGTGCT TACCTTTCTGCGGGTTACGGTAGGCAATCAATGTCGTGTTGTTCGGGTGT TGCTGTGACGTGTATAGTTGTGAGGCTCTTGGACGTCCTCTTAAACGGTA GAGTCCACGACGCTAAGATGCTAATGATTTCGAGGACTGACTTGTTCTTT CCCCCCTGTTTTCGCCTGGTATTTTGTGTGTTCTATTGCGGCTCGCGGTC TAACTGATTCGATTTTCGGGTGGTGCTGTGACGTGTTTGGTGGTGGGGCT CGTGGACGTCCGCTTAAGCGATAGAGGCAACTACGCTTGTGTGCATACGT TTGCGAGCACTCACAACGGTGAAGAAGCTCCCAACTTGGTTCGGCGAACG CCGTGGAGCGGTAGCTT back to topprotein sequence of EsuBft816_5a-0001 >EsuBft816_5 ID=EsuBft816_5|Name=EsuBft816_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=620bp
MMLMLKALGSICCRSAAAAVRTTPPLERAAIPISATMRRLSTSTHSGRTT SPEQHQEWKSVYRAFLLHVHPDFFHESPKKRAVNEKSLKSLSQHLDRLGG EDTRSGGVHSRSNAANGSASPLVFFLKQAGDEGAGSKSDGSPSRGKVMLP LGSHHQMATHLYDSGMSGVSPPPAHAEQASTRRHHSSRPVDSSNNDNPSR WHGWEDDLFGGTAANRAWDEAAAGRNGSRDTHGRSAFSSDDDKTREGRQR TTEWGAAFERRSGHASWLGQILSTDEGRALVRERRSSSRKVRRLVGELRE QYGFGEFTFRCGWSKSNLCVALGSLVETCRARRGEFLVNDFGGLEVVFRN DPSVLHKGEIRLCPSDVPNQWVSALRRVTPAVLSAAEEQSREMISLQERA SRALRGARLSRGLSCSKSRYRDFLSKVCAAADAEPDEGDGGGGDAAADLV KGDWSDLMCRVEEGFRRASTVLEDGTIQVGSDMTLKTLRRCLGRDSDSSS AATAEYLELAVAAAATAERCRQALGLESIKRSRHTVGNSEMVMACEALVR FSERAKSGGDLRAEKEAVAARRRLRGHCVRVVGSRVGVCDGVTEDGEIVL PWNWWEEEDGEERRSSAPVW back to topmRNA from alignment at Scaffold_464:134828..139050- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft816_5a-0001 ID=EsuBft816_5a-0001|Name=EsuBft816_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4223bp|location=Sequence derived from alignment at Scaffold_464:134828..139050- (Ectocarpus subulatus male Bft15b) TCCACGTCCTACTCGCGCTATCTCTCCGTCTCCGTGCGCTGACAAGGCGG
CTTGGAAGCTGGCGTGTTAGGTAACAACGGTGTGATGACGTGGGGGATGT
GATCATACCCACTCACAACCGCGTACATTCAGGAACCAAGCACCAAGTCG
GAAGGAGAGCGCCCTCGGTCGTGTATTGTACTTGCGTCGCAGTTTTGAAT
CTTCGCTCCGCAGACGGAGACACGAACACGCCAGGACAGGACACGGGTAG
CCTGCCCCTTACGGTGGGTTCTCCGCACCTTGCGTGGGTCTCAGCATGAT
GTTGATGTTGAAGGCTCTTGGCTCGATTTGTTGCCGTTCGGCAGCAGCGG
CAGTACGGACGACACCACCGCTAGAGAGGGCGGCCATACCCATATCCGCC
ACGATGCGGAGGCTTAGCACCAGCACCCACAGCGGGAGGACCACATCGCC
GGAGCAGCATCAGGAGTGGAAGTCGGTGTACAGAGCCTTCCTTCTCCACG
TGCATCCTGATTTCTTCCACGAGTCTCCCAAGAAACGCGCGGTGAACGAG
AAAAGTCTCAAGTCGCTGTCCCAACATCTTGACCGACTTGGCGGCGAGGA
CACCCGCAGTGGCGGTGTGCACAGCAGGAGCAATGCCGCCAACGGGAGCG
CTTCGCCGCTGGTTTTCTTCCTAAAGCAAGCCGGAGACGAAGGCGCCGGC
TCTAAGAGCGACGGAAGCCCCTCGCGTGGGAAGGTCATGCTGCCGCTAGG
ATCTCACCACCAGATGGCGACACATTTGTACGACTCCGGCATGTCAGGCG
TCAGTCCCCCACCAGCCCACGCCGAACAAGCTTCGACACGTCGTCACCAC
AGCAGTCGCCCTGTCGATAGCAGCAACAACGACAACCCCTCGAGGTGGCA
CGGCTGGGAGGATGATTTGTTCGGCGGGACGGCAGCCAACAGGGCGTGGG
ACGAGGCGGCGGCTGGTCGAAACGGGAGTAGAGACACACACGGTCGGTCA
GCCTTCAGCAGCGACGACGACAAGACCCGCGAAGGGAGACAGAGGACGAC
GGAGTGGGGCGCGGCCTTCGAGCGTCGCAGCGGCCATGCCTCGTGGCTGG
GACAGATCCTGTCCACGGATGAAGGGAGGGCCCTAGTCAGGGAGCGCCGG
TCTAGCTCGAGGAAGGTTCGACGGCTGGTGGGAGAGCTGCGGGAGCAATA
CGGCTTTGGCGAGTTCACCTTCAGGTGTGCTTGAGTGTGGGGTTGAGCCC
TTGGACCGATTTTTGGGTGGTTTTTCTGCAGATGACGTACGTACTCCCAT
GAACGTGTACACGTGTACTTCGAAGTATACATTACCGCTTAAGTTGTTGG
AGGGATAGATGAATACCTCTTGTTTGTTTGCATCGTATCGTCAGCTCGTA
CGTGTTTCCTAGATTCTGTCAGCAAGGCCAGGCGTGGTCAAAGAGCAGTA
CTGTAAGCGCGTTGGTTTTCTAGGGTAAAGTACGGTTCCCTGACGTGTCA
ACTCCAACCCGAATGTACCCCACATGCATCCCAGTGGCTATTGGAGGTAG
ATGATAGATCCCTTCACGCAATGTGTTGGATATTAGTAGTCGTGGTTTTT
GTCCGGGTCCCCTCGTTGTGACGACAAACGCACCACCTATCGGCGAACGA
TATTGGCAGGTGCGGCTGGAGTAAGTCGAATCTTTGTGTGGCTCTGGGCT
CCCTGGTGGAGACATGCCGCGCCCGTCGAGGAGAGTTTCTCGTGAACGAT
TTCGGTGGTCTCGAAGTGGTGTTCCGGAATGACCCGTCCGTCCTGCACAA
GGGTAAGAGGTGGTTCGAACACGGTATTGTTCCGCGTTCCTAGCGGTAAT
CATCACCATCAAATCTTGCAAGACCGAGTACACAGGTCGAAAGTACAGAG
GAGGTTGTGTGGTGTTTTTTTTAGTTTACTTTGGGTATATTTTTCATCTT
CGGTTTGGGGAAAATGATATGCGAGTTGAGACTTTTGTCGTACGGGCGTG
AGTTTGGTGTTCTTGATTACTATCTTGGCGGCCGTTTTCCTGATCGGAGG
CCGGCAATCGCGTTGTCAATGTACGACAATGCCTACCGAGCTATTCCTTT
GCCATCGTTCAAGAATCCAGAACCTTCCAACCAGCTTGCACCGGAACAGC
AACACCTATGTTTGTGTGCTGATGCTGACCGCCCCCCCGACTGTTACGAA
ATACACCCTCTCAGTTCATTAACTCTTGAAGAACACGTTTCACCCTCTCC
CGGTCCGCGTCTGCTCCTTCCCCGGTTGGACGGCATTGCTACTGGTCGAT
TGTTCAATCGCTTTCGGCCCACAGGGGAGATCCGGCTGTGCCCCTCCGAC
GTGCCGAACCAGTGGGTATCGGCGCTACGACGCGTCACCCCCGCCGTGCT
TTCCGCGGCGGAAGAGCAATCCCGCGAGATGATTTCCCTGCAGGAGAGGG
CGTCGAGGGCTCTGCGAGGGGCCCGTCTTTCGAGAGGGCTTTCCTGCTCG
AAAAGCAGGTTGGTGGGTGCAACAACCGCAGGGAGTTTACCTTATTGGTG
GAGGTCCTCCCCCTCGTGTGGTCTGCATGTAGCCTACCCAGGCTAGGTAG
GGTGCCATTGTGTGGTGCTGTAGATTCACGGGCGACTTCGCTCAGCAACC
CTTCTCTCACCACCACCCCGCTCGTCGCCCTTGCCGTCGCGGGTTTTGGT
TGAAGATATCGCGACTTCTTGAGCAAGGTTTGCGCAGCGGCGGACGCTGA
GCCCGACGAAGGTGACGGTGGTGGTGGCGATGCAGCGGCAGATTTGGTGA
AAGGCGATTGGTCGGATTTGATGTGCAGGGTAGAGGAGGGCTTCCGTCGT
GCGTCCACGGTCCTAGAGGACGGCACTATTCAGGTAAACAGGCGATTATG
GATGGTCCTCTCGATCTTGAGCGACCGTCGGAGTGAAGACCAGGTTTCTC
TCGGGTATAACTTAGAGCTCAGTGCTAGTTGTTGCTGTGTGTTACCGAAA
CGTTGAGATATACGCTTCCTAACCCTCAACGTTATATTAGGAGCGGTGTG
GGAATAAGGTGAGAGCGTCTGCCAAAGAGAAATGAGCGTTGTCATTTTGA
CTTGTCTCGAGACCACTCCGAAACCGAGACGTGAGACCCGTTCCCGCACG
TTGTTATATAGTGCGTGATTTTCGATTGGTTTCGTGACTGCTGTTGTTAA
CCTCTCCGACACACGCCCACGCTTTGGTTTAGTACCAGCAGAAAAGACCC
TCGTCGTCGTTGCTCGCTCTCCACCTTTCGGGCAGGTCGGCTCCGACATG
ACCCTCAAGACCCTTCGGCGGTGCCTCGGGAGAGACTCGGACAGCTCTTC
CGCCGCCACCGCCGAGTACCTCGAGCTGGCGGTCGCGGCGGCTGCGACGG
CCGAGCGCTGCCGGCAGGCCCTCGGCCTCGAATCCATCAAGCGGTCCCGC
CATACCGTCGGCAACTCGGAGATGGTCATGGCCTGCGAAGCCCTCGTCAG
GTTCAGCGAGCGGGCGAAGAGCGGCGGGGACTTGCGAGCGGAGAAGGAGG
CGGTCGCCGCTCGGCGACGGTTGAGGGGCCACTGCGTTAGGGTGGTGGGG
TCGAGGGTGGGCGTTTGCGACGGGGTGACGGAAGATGGGGAAATCGTGCT
CCCCTGGAACTGGTGGGAAGAGGAGGATGGAGAGGAGCGACGGTCTTCGG
CTCCGGTCTGGTGATGATCATTGTGTTTCTATGTGTTTTCGGTCGGTTCC
GAGAAAATTGAACCGGGTAATTTATTCCTGATAGAATTAGACAAGAGGCT
CAACGCATAGAACCGGCCACGGTGATTCCCTTTTTTCGCCTGGGATTTGG
TGTGCTTACCTTTCTGCGGGTTACGGTAGGCAATCAATGTCGTGTTGTTC
GGGTGTTGCTGTGACGTGTATAGTTGTGAGGCTCTTGGACGTCCTCTTAA
ACGGTAGAGTCCACGACGCTAAGATGCTAATGATTTCGAGGACTGACTTG
TTCTTTCCCCCCTGTTTTCGCCTGGTATTTTGTGTGTTCTATTGCGGCTC
GCGGTCTAACTGATTCGATTTTCGGGTGGTGCTGTGACGTGTTTGGTGGT
GGGGCTCGTGGACGTCCGCTTAAGCGATAGAGGCAACTACGCTTGTGTGC
ATACGTTTGCGAGCACTCACAACGGTGAAGAAGCTCCCAACTTGGTTCGG
CGAACGCCGTGGAGCGGTAGCTT back to topCoding sequence (CDS) from alignment at Scaffold_464:134828..139050- >EsuBft816_5a-0001 ID=EsuBft816_5a-0001|Name=EsuBft816_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1863bp|location=Sequence derived from alignment at Scaffold_464:134828..139050- (Ectocarpus subulatus male Bft15b) ATGATGTTGATGTTGAAGGCTCTTGGCTCGATTTGTTGCCGTTCGGCAGC AGCGGCAGTACGGACGACACCACCGCTAGAGAGGGCGGCCATACCCATAT CCGCCACGATGCGGAGGCTTAGCACCAGCACCCACAGCGGGAGGACCACA TCGCCGGAGCAGCATCAGGAGTGGAAGTCGGTGTACAGAGCCTTCCTTCT CCACGTGCATCCTGATTTCTTCCACGAGTCTCCCAAGAAACGCGCGGTGA ACGAGAAAAGTCTCAAGTCGCTGTCCCAACATCTTGACCGACTTGGCGGC GAGGACACCCGCAGTGGCGGTGTGCACAGCAGGAGCAATGCCGCCAACGG GAGCGCTTCGCCGCTGGTTTTCTTCCTAAAGCAAGCCGGAGACGAAGGCG CCGGCTCTAAGAGCGACGGAAGCCCCTCGCGTGGGAAGGTCATGCTGCCG CTAGGATCTCACCACCAGATGGCGACACATTTGTACGACTCCGGCATGTC AGGCGTCAGTCCCCCACCAGCCCACGCCGAACAAGCTTCGACACGTCGTC ACCACAGCAGTCGCCCTGTCGATAGCAGCAACAACGACAACCCCTCGAGG TGGCACGGCTGGGAGGATGATTTGTTCGGCGGGACGGCAGCCAACAGGGC GTGGGACGAGGCGGCGGCTGGTCGAAACGGGAGTAGAGACACACACGGTC GGTCAGCCTTCAGCAGCGACGACGACAAGACCCGCGAAGGGAGACAGAGG ACGACGGAGTGGGGCGCGGCCTTCGAGCGTCGCAGCGGCCATGCCTCGTG GCTGGGACAGATCCTGTCCACGGATGAAGGGAGGGCCCTAGTCAGGGAGC GCCGGTCTAGCTCGAGGAAGGTTCGACGGCTGGTGGGAGAGCTGCGGGAG CAATACGGCTTTGGCGAGTTCACCTTCAGGTGCGGCTGGAGTAAGTCGAA TCTTTGTGTGGCTCTGGGCTCCCTGGTGGAGACATGCCGCGCCCGTCGAG GAGAGTTTCTCGTGAACGATTTCGGTGGTCTCGAAGTGGTGTTCCGGAAT GACCCGTCCGTCCTGCACAAGGGGGAGATCCGGCTGTGCCCCTCCGACGT GCCGAACCAGTGGGTATCGGCGCTACGACGCGTCACCCCCGCCGTGCTTT CCGCGGCGGAAGAGCAATCCCGCGAGATGATTTCCCTGCAGGAGAGGGCG TCGAGGGCTCTGCGAGGGGCCCGTCTTTCGAGAGGGCTTTCCTGCTCGAA AAGCAGATATCGCGACTTCTTGAGCAAGGTTTGCGCAGCGGCGGACGCTG AGCCCGACGAAGGTGACGGTGGTGGTGGCGATGCAGCGGCAGATTTGGTG AAAGGCGATTGGTCGGATTTGATGTGCAGGGTAGAGGAGGGCTTCCGTCG TGCGTCCACGGTCCTAGAGGACGGCACTATTCAGGTCGGCTCCGACATGA CCCTCAAGACCCTTCGGCGGTGCCTCGGGAGAGACTCGGACAGCTCTTCC GCCGCCACCGCCGAGTACCTCGAGCTGGCGGTCGCGGCGGCTGCGACGGC CGAGCGCTGCCGGCAGGCCCTCGGCCTCGAATCCATCAAGCGGTCCCGCC ATACCGTCGGCAACTCGGAGATGGTCATGGCCTGCGAAGCCCTCGTCAGG TTCAGCGAGCGGGCGAAGAGCGGCGGGGACTTGCGAGCGGAGAAGGAGGC GGTCGCCGCTCGGCGACGGTTGAGGGGCCACTGCGTTAGGGTGGTGGGGT CGAGGGTGGGCGTTTGCGACGGGGTGACGGAAGATGGGGAAATCGTGCTC CCCTGGAACTGGTGGGAAGAGGAGGATGGAGAGGAGCGACGGTCTTCGGC TCCGGTCTGGTGA back to top
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